BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00028981
         (685 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY32548.1| Uncharacterized protein TCM_040529 [Theobroma cacao]   102   9e-20
emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]   102   1e-19
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ...   102   1e-19
gb|AAU90206.1| putative polyprotein [Oryza sativa Japonica Group]     102   1e-19
gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao]   101   2e-19
emb|CAE02930.3| OSJNBa0014K14.2 [Oryza sativa Japonica Group]         101   2e-19
gb|AAT93941.1| putative polyprotein [Oryza sativa Japonica Group]     101   2e-19
ref|XP_004084355.1| PREDICTED: uncharacterized protein LOC101155...   101   2e-19
gb|AAT38786.2| Gag-pol polyprotein, putative [Solanum demissum]       101   2e-19
gb|EEE51974.1| hypothetical protein OsJ_33644 [Oryza sativa Japo...   100   3e-19
emb|CAD40924.3| OSJNBa0033G16.12 [Oryza sativa Japonica Group]        100   3e-19
emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]   100   4e-19
gb|AAT39267.1| putative polyprotein [Oryza sativa Japonica Group...   100   4e-19
gb|AAX96807.1| retrotransposon protein, putative, Ty1-copia sub-...   100   6e-19
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]         100   6e-19
gb|ABA98136.2| retrotransposon protein, putative, Ty1-copia subc...   100   6e-19
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         100   6e-19
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   100   6e-19
gb|ABA99836.1| retrotransposon protein, putative, Ty1-copia subc...   100   7e-19
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza...   100   7e-19

>gb|EOY32548.1| Uncharacterized protein TCM_040529 [Theobroma cacao]
          Length = 1266

 Score =  102 bits (255), Expect = 9e-20
 Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 8/221 (3%)
 Frame = +2

Query: 35   KMENNLYQVEFDKEIIVNHKVGED---LWNRRMGYISNTYLKK*AEHAVRSHENTIIKNS 205
            KM N  + ++ ++   + +K   +   LW+RR+G+I+  ++K      + +    I +  
Sbjct: 431  KMRNKCFPLDLNEAGHMAYKCVSNEARLWHRRLGHINYQFIKNMGSLNLVNDMPVITEVE 490

Query: 206  STCISCLARK*TRASF-LLSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRC 382
             TC  CL  K +R  F   S+ R   +L  IHTD+   I  LS++   Y+   IDD  R 
Sbjct: 491  KTCEVCLQGKQSRHPFPKQSQTRATNRLQLIHTDICGPIGTLSLNGNKYFILFIDDFSRF 550

Query: 383  SFIYFLKYKFHAFQYFKSF----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQK 550
             +I+FLK K  A QYF  F    +      IK+L+++ G E++S EF+  + Q  I    
Sbjct: 551  CWIFFLKQKSEAIQYFMKFKVLVEKQTDQKIKALRSDNGSEYTSNEFKALLTQEGIKQFL 610

Query: 551  ITSYSPQ*NGIVERKNQFLMNMA*AMLNNVDLDNIGWMRSS 673
              +YSPQ NG+ ERKN+ +M M   +L    +    W  ++
Sbjct: 611  TVTYSPQQNGVSERKNRTIMEMIRCLLFEQQMPKYFWAEAA 651


>emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]
          Length = 1269

 Score =  102 bits (254), Expect = 1e-19
 Identities = 69/217 (31%), Positives = 110/217 (50%), Gaps = 8/217 (3%)
 Frame = +2

Query: 35   KMENNLYQVEFD--KEIIVNHKVGEDL-WNRRMGYISNTYLKK*AEHAVRSHENTIIKNS 205
            KM  N + ++ D  +  + + K+ E + W++R G+ +   L+   E  +      I  N+
Sbjct: 418  KMNGNSFYLKLDLVEGHVFSAKIDESVVWHKRYGHFNLKSLRFMQEAGMVEDMPEISVNA 477

Query: 206  STCISCLARK*TRASFLLSENRRKI-KLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRC 382
             TC SC   K  R  F  + ++R   KL+ IH+D+   +   S+    Y+   IDD  R 
Sbjct: 478  QTCESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRM 537

Query: 383  SFIYFLKYKFHAFQYFKSFQNYI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQK 550
            +++YFLK K      FKSF+  +    G  +K L+ + G E++S EF V  ++  I HQ 
Sbjct: 538  TWVYFLKTKSQVLSMFKSFKKMVETQSGQNVKVLRTDNGGEYTSKEFSVFCQEAGIVHQL 597

Query: 551  ITSYSPQ*NGIVERKNQFLMNMA*AMLNNVDLDNIGW 661
               YSPQ NG+ +RKN+ +M MA  ML    L  + W
Sbjct: 598  TAPYSPQQNGVSKRKNRTVMEMARCMLFEKKLPKLLW 634


>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1333

 Score =  102 bits (254), Expect = 1e-19
 Identities = 68/230 (29%), Positives = 120/230 (52%), Gaps = 12/230 (5%)
 Frame = +2

Query: 8    KENNKLI--IPKMENNLYQVEF----DKEIIVNHKVGEDLWNRRMGYISNTYLKK*AEH- 166
            KE+ + I  +P  +N ++ ++     +  ++V  K   +LW+ R G+++  +LK   +  
Sbjct: 405  KESGRTIARVPMTQNKMFPLDISNVGNSALVVKEKNETNLWHLRYGHLNVNWLKLLVQKD 464

Query: 167  AVRSHENTIIKNSSTCISCLARK*TRASFLLSENRRKIK-LDQIHTDLYDLIRNLSIDEC 343
             V    N  IK    C  C+  K TR SF + ++ R    L+ +H DL   ++  S+   
Sbjct: 465  MVIGLPN--IKELDLCEGCIYGKQTRKSFPVGKSWRATTCLELVHADLCGPMKMESLGGS 522

Query: 344  NYYTCLIDDHRRCSFIYFLKYKFHAFQYFKSFQNYI----GLTIKSLKNNQG*EFSSCEF 511
             Y+    DD+ R S++YFLK+K   F+ FK F+ ++    G  IKSL+ ++G EF S +F
Sbjct: 523  RYFLMFTDDYSRFSWVYFLKFKSETFETFKKFKAFVENQSGNKIKSLRTDRGGEFLSNDF 582

Query: 512  EVNIRQHEINHQKITSYSPQ*NGIVERKNQFLMNMA*AMLNNVDLDNIGW 661
             +   ++ I  +    Y+P+ NG+ ERKN+ ++ MA + L    L +  W
Sbjct: 583  NLFCEENGIRRELTAPYTPEQNGVAERKNRTVVEMARSSLKAKGLPDYFW 632


>gb|AAU90206.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1256

 Score =  102 bits (253), Expect = 1e-19
 Identities = 69/202 (34%), Positives = 102/202 (50%), Gaps = 9/202 (4%)
 Frame = +2

Query: 83   VNHKVGE-----DLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRA 247
            VNH  G      ++W+ R+ +I N  L             +I+K S  C SC+  K  R 
Sbjct: 486  VNHICGSVDDEANVWHSRLCHI-NFGLMSRLSSMYLIPRFSIVKGSK-CHSCVQSKQPRK 543

Query: 248  SFLLSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAFQY 427
                +E R    L+ +H+DL ++I  L+     Y+  LIDD  R  ++Y LK K  A  Y
Sbjct: 544  PHKAAEERNLAPLEFLHSDLCEMIGVLTKGGKRYFMTLIDDATRFCYVYLLKMKDEALDY 603

Query: 428  FKSF----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERK 595
            FK +    +N +   IK L++++G EF S EF++   +H I H+    YSP+ NGI ERK
Sbjct: 604  FKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHESAPPYSPESNGIAERK 663

Query: 596  NQFLMNMA*AMLNNVDLDNIGW 661
            N+ L N+  AML+   L    W
Sbjct: 664  NRTLTNLVNAMLDTAGLPKAWW 685


>gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao]
          Length = 1318

 Score =  101 bits (252), Expect = 2e-19
 Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 8/221 (3%)
 Frame = +2

Query: 35   KMENNLYQVEFDKEIIVNHKVGED---LWNRRMGYISNTYLKK*AEHAVRSHENTIIKNS 205
            KM N  + ++ ++   + +K   +   LW+RR+G+I+  ++K      + +    I +  
Sbjct: 431  KMRNKCFPLDLNEAGHMAYKCVSNEARLWHRRLGHINYQFIKNMGSLNLVNDMPIITEVE 490

Query: 206  STCISCLARK*TRASF-LLSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRC 382
             TC  CL  K +R  F   S+ R   +L  IHTD+   I  LS++   Y+   IDD  R 
Sbjct: 491  KTCEVCLQGKQSRHPFPKQSQTRTANRLQLIHTDICGPIGTLSLNGNKYFILFIDDFSRF 550

Query: 383  SFIYFLKYKFHAFQYFKSF----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQK 550
             +I+FLK K  A QYF  F    +      IK+L+++ G E++S EF+  + Q  I    
Sbjct: 551  CWIFFLKQKSEAIQYFMKFKVLVEKQTDQKIKALRSDNGSEYTSNEFKALLTQEGIKQFL 610

Query: 551  ITSYSPQ*NGIVERKNQFLMNMA*AMLNNVDLDNIGWMRSS 673
               YSPQ NG+ ERKN+ +M M   +L    +    W  ++
Sbjct: 611  TVPYSPQQNGVSERKNRTIMEMIRCLLFEQQMPKYFWAEAA 651


>emb|CAE02930.3| OSJNBa0014K14.2 [Oryza sativa Japonica Group]
          Length = 628

 Score =  101 bits (252), Expect = 2e-19
 Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 9/202 (4%)
 Frame = +2

Query: 83  VNHKVGE-----DLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRA 247
           VNH  G      ++W+ R+ +I+   + + +  ++R      I   S C SC+  K  R 
Sbjct: 352 VNHICGSVDDEANVWHSRLCHINFGLMSRLS--SMRLIPKFSIVKGSKCHSCVQSKQPRK 409

Query: 248 SFLLSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAFQY 427
               +E R    L+ +H+DL ++ R L+     Y+  LIDD  R  ++Y LK K  A  Y
Sbjct: 410 PHNAAEERNLAPLELLHSDLCEMNRVLTKGGKRYFMTLIDDATRFYYVYLLKTKDKALDY 469

Query: 428 FKSF----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERK 595
           FK +    +N +   IK L++++G EF S EF++   +H I H++   YSP+ NGI ERK
Sbjct: 470 FKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERK 529

Query: 596 NQFLMNMA*AMLNNVDLDNIGW 661
           N+ L ++  AML+   L    W
Sbjct: 530 NRTLTDLVNAMLDTAGLPKAWW 551


>gb|AAT93941.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1433

 Score =  101 bits (252), Expect = 2e-19
 Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 9/202 (4%)
 Frame = +2

Query: 83   VNHKVGE-----DLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRA 247
            VNH  G      ++W+ R+ +I+   + + +   +   + +I+K S  C SC+  K  R 
Sbjct: 420  VNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP-KFSIVKGSK-CHSCVQSKQPRK 477

Query: 248  SFLLSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAFQY 427
                +E R    L+ +H+DL ++   L+  E  Y+  LIDD  R  ++Y LK K  A  Y
Sbjct: 478  PHKAAEERNLAPLELLHSDLCEMNGVLTKGEKRYFMTLIDDATRFCYVYLLKTKDEALDY 537

Query: 428  FKSF----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERK 595
            FK +    +N +   IK L++++G EF S EF++   +H I H++   YSP+ NGI ERK
Sbjct: 538  FKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERK 597

Query: 596  NQFLMNMA*AMLNNVDLDNIGW 661
            N+ L ++  AML+   L    W
Sbjct: 598  NRTLTDLVNAMLDTAGLPKAWW 619


>ref|XP_004084355.1| PREDICTED: uncharacterized protein LOC101155079 [Oryzias latipes]
          Length = 1199

 Score =  101 bits (251), Expect = 2e-19
 Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 7/211 (3%)
 Frame = +2

Query: 44   NNLYQVEFDKEIIVNHK--VGEDLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCI 217
            + LYQ++  K++ V H   V   LW++R+G+ +     K   + V     T +   S C 
Sbjct: 524  DGLYQLDGKKDLQVCHNASVAASLWHQRLGHTTKLKELKDLVNGVDFSTETEV---SFCE 580

Query: 218  SCLARK*TRASFL-LSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIY 394
             C+  K ++  +  +   R K ++  IH+D+   ++  SI    Y+   IDD+ RC  +Y
Sbjct: 581  GCVEGKLSKQPYKSIGGIRSKHRMQLIHSDVCGPMQTESIGGTKYFVTFIDDYSRCCKVY 640

Query: 395  FLKYKFHAFQYFKSFQ----NYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSY 562
            FLK+K      FK F+    N  G  +K L+ + G E++S EF+  ++   I H+    +
Sbjct: 641  FLKHKNEVLTKFKEFERTFTNECGQAVKRLRTDNGGEYTSREFQEYLKAQGIQHEVTVPH 700

Query: 563  SPQ*NGIVERKNQFLMNMA*AMLNNVDLDNI 655
            SPQ NG+ ERKN+ L+  A +ML++  L  I
Sbjct: 701  SPQQNGVAERKNRTLVEAARSMLSHAKLPKI 731


>gb|AAT38786.2| Gag-pol polyprotein, putative [Solanum demissum]
          Length = 1140

 Score =  101 bits (251), Expect = 2e-19
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 8/222 (3%)
 Frame = +2

Query: 20   KLIIPKMENNLYQVEFDKEIIVNHKVGED---LWNRRMGYISNTYLKK*AEHAVRSHENT 190
            KL+  KM N  + +++    I  +   +D   +W++R+G I+   LK      + +   +
Sbjct: 431  KLLSVKMNNRSFPLDWKHTDIGAYVSIQDETYVWHKRLGQINFKSLKLMQNKDLVADMPS 490

Query: 191  IIKNSSTCISCLARK*TRASFLLSENRRKI-KLDQIHTDLYDLIRNLSIDECNYYTCLID 367
            I + S+ C  C   K +++ F +++  R   KL  IHTD+   +   S +   Y+   I+
Sbjct: 491  INETSNVCGVCQIGKLSQSPFPINQAWRATEKLQLIHTDVCGPMSTPSYNGSKYFLLFIN 550

Query: 368  DHRRCSFIYFLKYK---FHAFQYFKS-FQNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHE 535
            D  R  ++YFLK+K   F AFQ FK+  +N  G  IK L+++ G EF+S +F+  +++  
Sbjct: 551  DLTRFCWVYFLKHKSEVFVAFQRFKATVENQCGSLIKILRSDNGTEFTSNQFKDFLQKAG 610

Query: 536  INHQKITSYSPQ*NGIVERKNQFLMNMA*AMLNNVDLDNIGW 661
            I+HQ   +Y+PQ NG+ ERKN+ +MNMA  +L    L  + W
Sbjct: 611  IHHQLTVTYTPQQNGVSERKNRSIMNMARCLLFEKGLPKVLW 652


>gb|EEE51974.1| hypothetical protein OsJ_33644 [Oryza sativa Japonica Group]
          Length = 679

 Score =  100 bits (250), Expect = 3e-19
 Identities = 66/202 (32%), Positives = 106/202 (52%), Gaps = 9/202 (4%)
 Frame = +2

Query: 83  VNHKVGE-----DLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRA 247
           VNH  G      ++W+ R+ +I+   + + +   +   + +I+K S  C SC+  K  R 
Sbjct: 160 VNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP-KFSIVKGSK-CHSCVQSKQPRK 217

Query: 248 SFLLSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAFQY 427
               +E R    L+ +H+DL ++   L+     Y+  LIDD  R  ++Y LK K  A  Y
Sbjct: 218 PHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDY 277

Query: 428 FKSF----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERK 595
           FK +    +N +   IK L++N+G EF S EF++   +H I H++   YSP+ NGI ERK
Sbjct: 278 FKIYKAEVENQLDRKIKRLRSNRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERK 337

Query: 596 NQFLMNMA*AMLNNVDLDNIGW 661
           N+ L ++  AML+   L    W
Sbjct: 338 NRTLTDLVNAMLDTAGLPKAWW 359


>emb|CAD40924.3| OSJNBa0033G16.12 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  100 bits (250), Expect = 3e-19
 Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 9/202 (4%)
 Frame = +2

Query: 83   VNHKVGE-----DLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRA 247
            VNH  G      ++W+ R+ +I+   + + +   +   + +I+K S  C SC+  K  R 
Sbjct: 420  VNHICGSVDDEANVWHSRLCHINFGLMSQLSSMCLIP-KFSIVKGSK-CHSCVQSKQPRK 477

Query: 248  SFLLSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAFQY 427
                +E R    L+ +H+DL ++   L+     Y+  LIDD  R  ++Y LK K  A  Y
Sbjct: 478  PHKAAEERNLAPLELLHSDLCEMNGALTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDY 537

Query: 428  FKSF----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERK 595
            FK +    +N +   IK L++++G EF S EF++   +H I H++   YSP+ NGI ERK
Sbjct: 538  FKIYKAEVENQLDRKIKRLRSDRGGEFCSNEFDLFCEEHGIIHERTPPYSPESNGIAERK 597

Query: 596  NQFLMNMA*AMLNNVDLDNIGW 661
            N+ L ++  AML+ V L    W
Sbjct: 598  NRTLTDLVNAMLDTVGLPKAWW 619


>emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]
          Length = 2041

 Score =  100 bits (249), Expect = 4e-19
 Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 8/217 (3%)
 Frame = +2

Query: 35   KMENNLYQVEFD--KEIIVNHKVGEDL-WNRRMGYISNTYLKK*AEHAVRSHENTIIKNS 205
            KM  N + ++ D  +  + + K+ E + W++R  + +   L+   E  +      I  N+
Sbjct: 1151 KMNGNSFYLKLDLVEGHVFSAKIDESVVWHKRYXHFNLKSLRFMQEAXMVEDMPEISVNA 1210

Query: 206  STCISCLARK*TRASFLLSENRRKI-KLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRC 382
             TC SC   K  R  F  + ++R   KL+ IH+D+   +   S+    Y+   IDD  R 
Sbjct: 1211 QTCESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRM 1270

Query: 383  SFIYFLKYKFHAFQYFKSFQNYI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQK 550
            +++YFLK K      FKSF+  +    G  +K L+ + G E++S EF V  ++  I HQ 
Sbjct: 1271 TWVYFLKTKSQVLSMFKSFKKMVETQSGQXVKVLRTDNGGEYTSKEFSVFCQEAGIVHQL 1330

Query: 551  ITSYSPQ*NGIVERKNQFLMNMA*AMLNNVDLDNIGW 661
               YSPQ NG+ ERKN+ +M MA  ML    L  + W
Sbjct: 1331 TAPYSPQXNGVSERKNRTVMEMARCMLFEKKLPKLLW 1367


>gb|AAT39267.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|50878407|gb|AAT85181.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1297

 Score =  100 bits (249), Expect = 4e-19
 Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 9/202 (4%)
 Frame = +2

Query: 83   VNHKVGE-----DLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRA 247
            VNH  G      ++W+ R+ +I+   + + +   + S + +I+K S  C SC+  K  R 
Sbjct: 420  VNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIS-KFSIVKGSK-CHSCVQSKQPRK 477

Query: 248  SFLLSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAFQY 427
                +E R    L+ +H+DL ++   L+     Y+  LIDD  R  ++Y LK K  A  Y
Sbjct: 478  PHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDVTRFCYVYLLKTKDEALDY 537

Query: 428  FKSF----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERK 595
            FK +    +N +   IK L++++G EF S EF++   +H I H++   YSP+ NGI ERK
Sbjct: 538  FKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERK 597

Query: 596  NQFLMNMA*AMLNNVDLDNIGW 661
            N+ L ++  AML+   L    W
Sbjct: 598  NRTLTDLVNAMLDTAGLPKAWW 619


>gb|AAX96807.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77550001|gb|ABA92798.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1234

 Score =  100 bits (248), Expect = 6e-19
 Identities = 65/196 (33%), Positives = 107/196 (54%), Gaps = 9/196 (4%)
 Frame = +2

Query: 83   VNHKVGE-----DLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRA 247
            VNH  G      ++W+ R+ +I+   + + +   +   + +I+K S+ C SC+  K  R 
Sbjct: 420  VNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIL-KFSIVKGSN-CHSCVQSKQPRK 477

Query: 248  SFLLSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAFQY 427
                +E R    L+ +H+DL ++   L+  E  Y+  LIDD  R  ++Y LK K  A  Y
Sbjct: 478  PHKAAEERNLAPLELLHSDLCEMNGVLTKGEKRYFMTLIDDATRFCYVYLLKTKDEALDY 537

Query: 428  FKSF----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERK 595
            FK +    +N +   IK L++++G EF S EF++   +H I H++   YSP+ NGI ERK
Sbjct: 538  FKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERK 597

Query: 596  NQFLMNMA*AMLNNVD 643
            N+ L ++  AML+  D
Sbjct: 598  NRTLTDLVNAMLDTAD 613


>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  100 bits (248), Expect = 6e-19
 Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 9/202 (4%)
 Frame = +2

Query: 83   VNHKVGE-----DLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRA 247
            VNH  G      ++W+ R+ +I+   + + +   + S     I   S C SC+  K  R 
Sbjct: 420  VNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIS--KFYIVKGSKCHSCVQSKQPRK 477

Query: 248  SFLLSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAFQY 427
                +E R    L+ +H+DL ++   L+     Y+  LIDD  R  ++Y LK K  A  Y
Sbjct: 478  PHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDY 537

Query: 428  FKSF----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERK 595
            FK +    +N +   IK L++++G EF S EF++   +H I H++   YSP+ NGI ERK
Sbjct: 538  FKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERK 597

Query: 596  NQFLMNMA*AMLNNVDLDNIGW 661
            N+ L ++  AML+   L    W
Sbjct: 598  NRTLTDLVNAMLDTAGLPKAWW 619


>gb|ABA98136.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1249

 Score =  100 bits (248), Expect = 6e-19
 Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 9/202 (4%)
 Frame = +2

Query: 83   VNHKVGE-----DLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRA 247
            VNH  G      ++W+ R+ +I+   + + +   +    N  I   S C SC+  K  R 
Sbjct: 420  VNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP--NFSIVKGSKCHSCVQSKQPRK 477

Query: 248  SFLLSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAFQY 427
                +E R    L+ +H+DL ++   L+     Y+  LIDD  R  ++Y LK K  A  Y
Sbjct: 478  PHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDY 537

Query: 428  FKSF----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERK 595
            FK +    +N +   IK L++++G EF S EF++   +H I H++   YSP+ NGI ERK
Sbjct: 538  FKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERK 597

Query: 596  NQFLMNMA*AMLNNVDLDNIGW 661
            N+ L ++  AML+   L    W
Sbjct: 598  NRTLTDLVNAMLDTAGLPKAWW 619


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  100 bits (248), Expect = 6e-19
 Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 9/220 (4%)
 Frame = +2

Query: 29   IPKMENNLYQVEFDKEII----VNHKVGEDLWNRRMGYISNTYLKK*AEHAVRSHENTII 196
            +P  +N ++ +    +I     + +K    LW+ R G+++   L+  +   +      I 
Sbjct: 437  VPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN 496

Query: 197  KNSSTCISCLARK*TRASFLLSENRRKIK-LDQIHTDLYDLIRNLSIDECNYYTCLIDDH 373
              +  C  CL  K  + SF    + R  K L+ IHTD+   I+  S+ + NY+   IDD 
Sbjct: 497  HPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDF 556

Query: 374  RRCSFIYFLKYKFHAFQYFKSFQNYI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEIN 541
             R +++YFLK K   F+ FK F+ ++    GL IK++++++G EF+S EF      + I 
Sbjct: 557  SRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIR 616

Query: 542  HQKITSYSPQ*NGIVERKNQFLMNMA*AMLNNVDLDNIGW 661
             Q     SPQ NG+VERKN+ ++ MA +ML +  L    W
Sbjct: 617  RQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELW 656


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  100 bits (248), Expect = 6e-19
 Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 9/220 (4%)
 Frame = +2

Query: 29   IPKMENNLYQVEFDKEII----VNHKVGEDLWNRRMGYISNTYLKK*AEHAVRSHENTII 196
            +P  +N ++ +    +I     + +K    LW+ R G+++   L+  +   +      I 
Sbjct: 437  VPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN 496

Query: 197  KNSSTCISCLARK*TRASFLLSENRRKIK-LDQIHTDLYDLIRNLSIDECNYYTCLIDDH 373
              +  C  CL  K  + SF    + R  K L+ IHTD+   I+  S+ + NY+   IDD 
Sbjct: 497  HPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDF 556

Query: 374  RRCSFIYFLKYKFHAFQYFKSFQNYI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEIN 541
             R +++YFLK K   F+ FK F+ ++    GL IK++++++G EF+S EF      + I 
Sbjct: 557  SRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIR 616

Query: 542  HQKITSYSPQ*NGIVERKNQFLMNMA*AMLNNVDLDNIGW 661
             Q     SPQ NG+VERKN+ ++ MA +ML +  L    W
Sbjct: 617  RQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELW 656


>gb|ABA99836.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1302

 Score = 99.8 bits (247), Expect = 7e-19
 Identities = 65/202 (32%), Positives = 106/202 (52%), Gaps = 9/202 (4%)
 Frame = +2

Query: 83   VNHKVGE-----DLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRA 247
            VNH  G      ++W+ R+ +I+   + + +   +   + +I+K S  C SC+  K  R 
Sbjct: 420  VNHICGSVDDEANVWHSRLCHINFVLMSRLSSMCLIP-KFSIVKGSK-CHSCVQSKQPRK 477

Query: 248  SFLLSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAFQY 427
                +E R    L+ +H+DL ++   L+     Y+  LIDD  R  ++Y LK K  A  Y
Sbjct: 478  PHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDY 537

Query: 428  FKSF----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERK 595
            FK +    +N +   IK L++++G EF S EF++   +H I H++   YSP+ NGI ERK
Sbjct: 538  FKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERK 597

Query: 596  NQFLMNMA*AMLNNVDLDNIGW 661
            N+ L ++  AML+   L    W
Sbjct: 598  NRTLTDLVNAMLDTAGLPKAWW 619


>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
            gi|31429795|gb|AAP51797.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1350

 Score = 99.8 bits (247), Expect = 7e-19
 Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 10/230 (4%)
 Frame = +2

Query: 2    ITKENNKLI----IPKMENNLYQVEFDKEIIVNHKVG-EDLWNRRMGYISNTYLKK*AEH 166
            + ++NN+L+    + K  N L ++    ++ +  ++   DLW++RMG+++   LK     
Sbjct: 340  LDRKNNRLVAKINMEKNRNFLLRMNHPTQMALRSEIDISDLWHKRMGHLNYRALKLLRTK 399

Query: 167  AVRSHENTIIKNSSTCISCLARK*TRASFLLSEN-RRKIKLDQIHTDLYDLIRNLSIDEC 343
             +      I   S  C  C+  K  RASF  S   R    L+ +HTD+   +  +S    
Sbjct: 400  GMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGAWRASAPLELVHTDIVGKVPTISEGGN 459

Query: 344  NYYTCLIDDHRRCSFIYFLKYKFHAFQYFKSF----QNYIGLTIKSLKNNQG*EFSSCEF 511
             Y+   IDD+ R  ++YFLK K  A + FK F    +N     IK L+++QG E+ S EF
Sbjct: 460  WYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEF 519

Query: 512  EVNIRQHEINHQKITSYSPQ*NGIVERKNQFLMNMA*AMLNNVDLDNIGW 661
            E       I  Q    YS Q NG+ ERKN+ + +MA +ML +  +    W
Sbjct: 520  EKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSMLQDKGMPKSFW 569