BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00028843
         (458 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001765725.1| predicted protein [Physcomitrella patens] gi...   166   3e-39
ref|XP_004350356.1| DNA-dependent protein kinase subunit [Dictyo...    62   8e-08
ref|XP_003286510.1| DNA-dependent protein kinase subunit [Dictyo...    55   1e-05

>ref|XP_001765725.1| predicted protein [Physcomitrella patens]
           gi|162683151|gb|EDQ69564.1| predicted protein
           [Physcomitrella patens]
          Length = 4165

 Score =  166 bits (420), Expect = 3e-39
 Identities = 86/151 (56%), Positives = 114/151 (75%)
 Frame = +3

Query: 6   RVLHYASLIKDKCLNSFRREDSKSVQAAILTPLHAILELSLQEDIELDFSLDWVFVEKML 185
           R LHYA+L+K+K L  FRREDSKSVQAA LTPL  +LEL++       F++D      ++
Sbjct: 172 RALHYAALLKEKSLTFFRREDSKSVQAAALTPLIVLLELNMARLKPAMFAVDQELSTLLM 231

Query: 186 SEYRKAKTNSTLKSNILVLIGYTVEKFPRSFDEESMGSIMKLCLDTLEEQLKSGKDPIYV 365
            E+RKAKTNSTLK+NI+ L+G  +E F  SF+EE++ +I+KLCLDTLEEQL+  K P  V
Sbjct: 232 LEFRKAKTNSTLKANIIQLLGDLIEYFRESFEEENVLAILKLCLDTLEEQLQ--KSPQLV 289

Query: 366 LVSGAVRCLDSLLTWYDKDAPAGGSIENSRR 458
           L++GA++CLDSLL W++   PAGGS+ENSRR
Sbjct: 290 LMAGAIKCLDSLLMWFNDSLPAGGSVENSRR 320


>ref|XP_004350356.1| DNA-dependent protein kinase subunit [Dictyostelium fasciculatum]
           gi|328865266|gb|EGG13652.1| DNA-dependent protein kinase
           subunit [Dictyostelium fasciculatum]
          Length = 877

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 5/140 (3%)
 Frame = +3

Query: 18  YASLIKDKCLNSFRREDSKSVQAAILTPLHAILELSL-----QEDIELDFSLDWVFVEKM 182
           Y   IK+ C++ FR++ S++VQA    P+  IL  S      Q  I+ +        +K+
Sbjct: 123 YIVSIKNLCISLFRKDQSQTVQALSFKPIQKILTKSFNYQTKQSSIKAELFGVRDMTDKL 182

Query: 183 LSEYRKAKTNSTLKSNILVLIGYTVEKFPRSFDEESMGSIMKLCLDTLEEQLKSGKDPIY 362
           + ++   K + T+K  IL+ +G   E FP S   +    +  + ++TL  QLKS K P  
Sbjct: 183 IEQFTCGKLSQTVKGEILITLGLFSEHFP-SVIMDYNNQLATILMETLGSQLKS-KAPET 240

Query: 363 VLVSGAVRCLDSLLTWYDKD 422
           VL+  +++ LD LL  +  D
Sbjct: 241 VLILSSIKALDCLLVHFSGD 260


>ref|XP_003286510.1| DNA-dependent protein kinase subunit [Dictyostelium purpureum]
           gi|325083491|gb|EGC36942.1| DNA-dependent protein kinase
           subunit [Dictyostelium purpureum]
          Length = 4168

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
 Frame = +3

Query: 18  YASLIKDKCLNSFRREDSKSVQAAILTPLHAILELS---LQEDIELDFSLDWVFVEKM-L 185
           YA  IK+ C++ FR++ S SVQAA   P+  IL L    L+E   +  S   + + ++ L
Sbjct: 137 YAIAIKNTCISIFRKDQSNSVQAAAFGPIKKILHLMSKILKEGSIVAESFGVLDMSQLFL 196

Query: 186 SEYRKAKTNSTLKSNILVLIGYTVEKFPRSFDEESMGSIMKLCLDTLEEQLKSGKDPIYV 365
            ++   K   T++  I+V++G   E F     + +   +  + ++TL  QLKS K P   
Sbjct: 197 LQFTCGKLTQTVRGEIIVVLGLFTEYFSNHMFDLNQ-QLSSIFMETLGGQLKS-KSPEST 254

Query: 366 LVSGAVRCLDSLLTWYDKD 422
           L+   ++ ++SLL  +  D
Sbjct: 255 LIQSCLKGINSLLVHFSGD 273