BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00028811
         (566 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006467340.1| PREDICTED: transcription initiation factor I...   263   3e-68
ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citr...   262   4e-68
ref|XP_006352367.1| PREDICTED: transcription initiation factor I...   254   8e-66
ref|XP_006352364.1| PREDICTED: transcription initiation factor I...   254   8e-66
ref|XP_004250258.1| PREDICTED: transcription initiation factor I...   254   8e-66
ref|XP_002262798.2| PREDICTED: transcription initiation factor I...   254   1e-65
emb|CBI33123.3| unnamed protein product [Vitis vinifera]              254   1e-65
ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|...   251   9e-65
gb|EMJ12738.1| hypothetical protein PRUPE_ppa003970mg [Prunus pe...   251   1e-64
gb|ESW19654.1| hypothetical protein PHAVU_006G143600g [Phaseolus...   249   4e-64
ref|XP_004152016.1| PREDICTED: transcription initiation factor I...   249   4e-64
gb|ESW26005.1| hypothetical protein PHAVU_003G083500g [Phaseolus...   247   1e-63
ref|XP_006380878.1| hypothetical protein POPTR_0006s01070g [Popu...   246   2e-63
ref|XP_002308775.1| transcription initiation factor IIF alpha su...   246   2e-63
ref|XP_006857695.1| hypothetical protein AMTR_s00061p00167160 [A...   246   4e-63
ref|XP_006586768.1| PREDICTED: transcription initiation factor I...   245   5e-63
gb|EOY28869.1| Transcription activators,DNA binding,RNA polymera...   245   5e-63
ref|XP_002322538.2| transcription initiation factor IIF alpha su...   244   1e-62
gb|EPS63331.1| hypothetical protein M569_11453, partial [Genlise...   241   1e-61
ref|XP_002872663.1| mutant TFIIF-alpha [Arabidopsis lyrata subsp...   237   1e-60

>ref|XP_006467340.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           isoform X1 [Citrus sinensis]
           gi|568825955|ref|XP_006467341.1| PREDICTED:
           transcription initiation factor IIF subunit alpha-like
           isoform X2 [Citrus sinensis]
          Length = 538

 Score =  263 bits (671), Expect = 3e-68
 Identities = 123/189 (65%), Positives = 150/189 (79%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           +DLYG++CKHMTLCL CGK+MAE KA C DCG  V +LIREYNVR  N+S+K++FIGRFV
Sbjct: 18  ADLYGSNCKHMTLCLTCGKTMAENKAKCFDCGAIVTRLIREYNVRPSNSSDKNYFIGRFV 77

Query: 183 QGLPNFSKKTNSDSKWTLKK-GLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP+FSKK N+++KWTL K GL+G+Q T+TLR+KYKNKP +LEDET Q Q+QG LEG+Q
Sbjct: 78  SGLPSFSKKKNAENKWTLHKDGLQGRQVTDTLREKYKNKPWMLEDETGQAQYQGHLEGSQ 137

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
           +A YYLL+MH KEFV+IPAG WY FNK AQYKQLTL              +GY+RW+MK 
Sbjct: 138 SATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKA 197

Query: 540 AKDGAAAFG 566
           A +GAAAFG
Sbjct: 198 ANNGAAAFG 206


>ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citrus clementina]
           gi|567915083|ref|XP_006449855.1| hypothetical protein
           CICLE_v10014841mg [Citrus clementina]
           gi|557552465|gb|ESR63094.1| hypothetical protein
           CICLE_v10014841mg [Citrus clementina]
           gi|557552466|gb|ESR63095.1| hypothetical protein
           CICLE_v10014841mg [Citrus clementina]
          Length = 538

 Score =  262 bits (670), Expect = 4e-68
 Identities = 123/188 (65%), Positives = 149/188 (79%), Gaps = 1/188 (0%)
 Frame = +3

Query: 6   DLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFVQ 185
           DLYG++CKHMTLCL CGK+MAE KA C DCG  V +LIREYNVR  N+S+K++FIGRFV 
Sbjct: 19  DLYGSNCKHMTLCLTCGKTMAENKAKCFDCGAIVTRLIREYNVRPSNSSDKNYFIGRFVS 78

Query: 186 GLPNFSKKTNSDSKWTLKK-GLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQN 362
           GLP+FSKK N+++KWTL K GL+G+Q T+TLR+KYKNKP +LEDET Q Q+QG LEG+Q+
Sbjct: 79  GLPSFSKKKNAENKWTLHKDGLQGRQVTDTLREKYKNKPWMLEDETGQAQYQGHLEGSQS 138

Query: 363 AAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKTA 542
           A YYLL+MH KEFV+IPAG WY FNK AQYKQLTL              +GY+RW+MK A
Sbjct: 139 ATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAA 198

Query: 543 KDGAAAFG 566
            +GAAAFG
Sbjct: 199 NNGAAAFG 206


>ref|XP_006352367.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           isoform X4 [Solanum tuberosum]
          Length = 535

 Score =  254 bits (650), Expect = 8e-66
 Identities = 120/189 (63%), Positives = 145/189 (76%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           SDLYG+SCKH+TLCL CGK+MAE +  C +CG PV +LIREYNVR+C++++K+HFI RF 
Sbjct: 18  SDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYNVRACSSNDKNHFIARFA 77

Query: 183 QGLPNFSKKTNSDSKWTL-KKGLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP FSKK N DSKWTL K+GL+G+Q T+TLR+KYKNKP +LEDET Q QF G LEGAQ
Sbjct: 78  SGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLEDETGQFQFHGHLEGAQ 136

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
           +A YYLL+M G+E  +IPAG WY FNK AQYKQLTL              +GYQRW+MK 
Sbjct: 137 SAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKA 196

Query: 540 AKDGAAAFG 566
           A +G AAFG
Sbjct: 197 ANNGPAAFG 205


>ref|XP_006352364.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           isoform X1 [Solanum tuberosum]
           gi|565371548|ref|XP_006352365.1| PREDICTED:
           transcription initiation factor IIF subunit alpha-like
           isoform X2 [Solanum tuberosum]
           gi|565371550|ref|XP_006352366.1| PREDICTED:
           transcription initiation factor IIF subunit alpha-like
           isoform X3 [Solanum tuberosum]
          Length = 538

 Score =  254 bits (650), Expect = 8e-66
 Identities = 120/189 (63%), Positives = 145/189 (76%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           SDLYG+SCKH+TLCL CGK+MAE +  C +CG PV +LIREYNVR+C++++K+HFI RF 
Sbjct: 18  SDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYNVRACSSNDKNHFIARFA 77

Query: 183 QGLPNFSKKTNSDSKWTL-KKGLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP FSKK N DSKWTL K+GL+G+Q T+TLR+KYKNKP +LEDET Q QF G LEGAQ
Sbjct: 78  SGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLEDETGQFQFHGHLEGAQ 136

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
           +A YYLL+M G+E  +IPAG WY FNK AQYKQLTL              +GYQRW+MK 
Sbjct: 137 SAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKA 196

Query: 540 AKDGAAAFG 566
           A +G AAFG
Sbjct: 197 ANNGPAAFG 205


>ref|XP_004250258.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Solanum lycopersicum]
          Length = 534

 Score =  254 bits (650), Expect = 8e-66
 Identities = 120/189 (63%), Positives = 145/189 (76%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           SDLYG+SCKH+TLCL CGK+MAE +  C +CG PV +LIREYNVR+C++++K+HFI RF 
Sbjct: 18  SDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYNVRACSSNDKNHFIARFA 77

Query: 183 QGLPNFSKKTNSDSKWTL-KKGLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP FSKK N DSKWTL K+GL+G+Q T+TLR+KYKNKP +LEDET Q QF G LEGAQ
Sbjct: 78  SGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLEDETGQFQFHGHLEGAQ 136

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
           +A YYLL+M G+E  +IPAG WY FNK AQYKQLTL              +GYQRW+MK 
Sbjct: 137 SAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKA 196

Query: 540 AKDGAAAFG 566
           A +G AAFG
Sbjct: 197 ANNGPAAFG 205


>ref|XP_002262798.2| PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Vitis vinifera]
          Length = 534

 Score =  254 bits (649), Expect = 1e-65
 Identities = 118/189 (62%), Positives = 147/189 (77%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           +DLYG++CKHMTLCL CGK+MAE    C DCG PV +LIREYNVR+ ++ +K++FIGRFV
Sbjct: 13  TDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYNVRTNSSGDKNYFIGRFV 72

Query: 183 QGLPNFSKKTNSDSKWTL-KKGLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP FSKK N+D+KW+L K+GL+G+Q ++ LR+KYKNKP +LEDET Q Q+ GQLEG+Q
Sbjct: 73  TGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLLEDETGQYQYHGQLEGSQ 132

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
           +A YYLL+M GKEFV+IPAG WY FNK AQYKQLTL              +GYQRW+MK 
Sbjct: 133 SATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRRTADGYQRWMMKA 192

Query: 540 AKDGAAAFG 566
           A +G AAFG
Sbjct: 193 ANNGPAAFG 201


>emb|CBI33123.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  254 bits (649), Expect = 1e-65
 Identities = 118/189 (62%), Positives = 147/189 (77%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           +DLYG++CKHMTLCL CGK+MAE    C DCG PV +LIREYNVR+ ++ +K++FIGRFV
Sbjct: 18  TDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYNVRTNSSGDKNYFIGRFV 77

Query: 183 QGLPNFSKKTNSDSKWTL-KKGLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP FSKK N+D+KW+L K+GL+G+Q ++ LR+KYKNKP +LEDET Q Q+ GQLEG+Q
Sbjct: 78  TGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLLEDETGQYQYHGQLEGSQ 137

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
           +A YYLL+M GKEFV+IPAG WY FNK AQYKQLTL              +GYQRW+MK 
Sbjct: 138 SATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRRTADGYQRWMMKA 197

Query: 540 AKDGAAAFG 566
           A +G AAFG
Sbjct: 198 ANNGPAAFG 206


>ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis]
           gi|223541454|gb|EEF43004.1| tfiif-alpha, putative
           [Ricinus communis]
          Length = 533

 Score =  251 bits (641), Expect = 9e-65
 Identities = 116/189 (61%), Positives = 148/189 (78%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           +DLYG++CKHMTLCL CGK+MAE  A C DCG  V +LIREYNVR+ ++S+K++FIGRFV
Sbjct: 19  TDLYGSNCKHMTLCLSCGKTMAENHAKCFDCGATVSRLIREYNVRASSSSDKNYFIGRFV 78

Query: 183 QGLPNFSKKTNSDSKWTLKK-GLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP+FSKK N+++KW+L+K GL+G+Q T+ LR+KYKN+P +LEDET Q Q+QG LEG+Q
Sbjct: 79  TGLPSFSKKKNAENKWSLQKEGLQGRQLTDALREKYKNRPWLLEDETGQFQYQGHLEGSQ 138

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
           +A YYLLI+ GKEFV+IPA  WY FNK AQYKQLTL              +GY+RW+MK 
Sbjct: 139 SATYYLLILQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMRNRRKTADGYERWMMKA 198

Query: 540 AKDGAAAFG 566
           A +G AAFG
Sbjct: 199 ANNGPAAFG 207


>gb|EMJ12738.1| hypothetical protein PRUPE_ppa003970mg [Prunus persica]
          Length = 537

 Score =  251 bits (640), Expect = 1e-64
 Identities = 117/189 (61%), Positives = 147/189 (77%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           S+LYG++CKHMTLCL CGK+MAE +A C DCG  V +LIREYNVR+   ++K++FIGRFV
Sbjct: 18  SELYGSNCKHMTLCLSCGKTMAENRAKCFDCGAIVTRLIREYNVRASTVNDKNYFIGRFV 77

Query: 183 QGLPNFSKKTNSDSKWTL-KKGLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP+FSKK N+++KW+L K+GL+G+Q ++TLRDKYKNKP +LEDET Q Q+QG LEGAQ
Sbjct: 78  TGLPSFSKKKNAENKWSLHKEGLQGRQLSDTLRDKYKNKPWVLEDETGQSQYQGHLEGAQ 137

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
            A YYLL+  GKEF +IPAG W+ FNK AQYKQLTL              +GY+RW+MK 
Sbjct: 138 TATYYLLMRQGKEFSAIPAGSWFNFNKVAQYKQLTLEEAEEKIKNRKKTADGYERWMMKA 197

Query: 540 AKDGAAAFG 566
           A +GAAAFG
Sbjct: 198 ANNGAAAFG 206


>gb|ESW19654.1| hypothetical protein PHAVU_006G143600g [Phaseolus vulgaris]
          Length = 540

 Score =  249 bits (635), Expect = 4e-64
 Identities = 115/189 (60%), Positives = 148/189 (78%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           +DLYG++CKHMTLCL CGK+MAE +A C DCG+ + +LIREYNVR+ +T++K++FIGRF+
Sbjct: 18  TDLYGSNCKHMTLCLSCGKTMAENRAKCVDCGVTLTRLIREYNVRASSTNDKNYFIGRFM 77

Query: 183 QGLPNFSKKTNSDSKWTLKK-GLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP+FSKK ++++KW L+K GL G+Q T+TLR+KYKNKP +LEDET Q Q+QG LEG+Q
Sbjct: 78  TGLPDFSKKKSAENKWALQKEGLLGRQITDTLREKYKNKPWLLEDETGQSQYQGHLEGSQ 137

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
           +A YYLL+   KEFV+IPAG WY FNK AQYKQLTL              +GYQRW+MK 
Sbjct: 138 SATYYLLMKERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA 197

Query: 540 AKDGAAAFG 566
           A +G AAFG
Sbjct: 198 ANNGPAAFG 206


>ref|XP_004152016.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Cucumis sativus] gi|449517383|ref|XP_004165725.1|
           PREDICTED: transcription initiation factor IIF subunit
           alpha-like [Cucumis sativus]
          Length = 538

 Score =  249 bits (635), Expect = 4e-64
 Identities = 113/189 (59%), Positives = 147/189 (77%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           ++LYG++CKHMTLCL CGK+MAE K  C DCG  V +LIREYNVR+  +++K++FIGRF+
Sbjct: 18  TELYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASNDKNYFIGRFM 77

Query: 183 QGLPNFSKKTNSDSKWTL-KKGLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLPNFSKK N+++KW+L K+GL+G+Q ++ LR+KYKN+P +LEDET Q QFQG LEG+Q
Sbjct: 78  SGLPNFSKKRNAENKWSLYKEGLQGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQ 137

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
           +A YYLL++ GKEF +IPAG WY FNK AQYKQLTL              +GY+RW+MK 
Sbjct: 138 SATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKA 197

Query: 540 AKDGAAAFG 566
           A +G AAFG
Sbjct: 198 ASNGPAAFG 206


>gb|ESW26005.1| hypothetical protein PHAVU_003G083500g [Phaseolus vulgaris]
          Length = 540

 Score =  247 bits (631), Expect = 1e-63
 Identities = 117/189 (61%), Positives = 146/189 (77%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           +DLYG++CKHMTLCL CGK+MAE KA C DCG  V +LIREY+VR+ + S+K +FIGRFV
Sbjct: 18  TDLYGSNCKHMTLCLTCGKTMAENKAKCFDCGATVTRLIREYSVRASSGSDKHYFIGRFV 77

Query: 183 QGLPNFSKKTNSDSKWTLKK-GLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP+FSKK ++++KW+L+K GL+ +Q T+ LR+KYKNKP +LEDET Q QFQG LEGAQ
Sbjct: 78  SGLPDFSKKKSAENKWSLQKEGLQSRQVTDALREKYKNKPWLLEDETGQSQFQGHLEGAQ 137

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
           +A YYLL+M  KEFV+IPAG WY FNK AQYKQLTL              +GY+RW+MK 
Sbjct: 138 SATYYLLMMERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKA 197

Query: 540 AKDGAAAFG 566
           A +G AAFG
Sbjct: 198 ANNGPAAFG 206


>ref|XP_006380878.1| hypothetical protein POPTR_0006s01070g [Populus trichocarpa]
           gi|550335193|gb|ERP58675.1| hypothetical protein
           POPTR_0006s01070g [Populus trichocarpa]
          Length = 536

 Score =  246 bits (629), Expect = 2e-63
 Identities = 117/191 (61%), Positives = 147/191 (76%), Gaps = 3/191 (1%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           +DLYG++CKHMTLCL CGK+MAE +  C DCG  V +LIREYNVR+  +SEK++FIGRFV
Sbjct: 18  TDLYGSNCKHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYNVRASTSSEKNYFIGRFV 77

Query: 183 QGLPNFSKKTNSDSKWT-LKKGLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP FSKK N+++KW+ LK+G+ G+Q T+TLR+K+KNKP +LEDET Q Q+QG LEG+Q
Sbjct: 78  TGLPGFSKKKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLLEDETGQFQYQGHLEGSQ 137

Query: 360 NAAYYLLIMHGKEFVSIPAGPW--YTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLM 533
           +A YYLL+M GKEFV+IPAG W  Y FNK A YKQLTL              +GY+RW+M
Sbjct: 138 SATYYLLMMSGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAEEKMKNRRKTADGYERWMM 197

Query: 534 KTAKDGAAAFG 566
           K A +GAAAFG
Sbjct: 198 KAAHNGAAAFG 208


>ref|XP_002308775.1| transcription initiation factor IIF alpha subunit family protein
           [Populus trichocarpa] gi|222854751|gb|EEE92298.1|
           transcription initiation factor IIF alpha subunit family
           protein [Populus trichocarpa]
          Length = 541

 Score =  246 bits (629), Expect = 2e-63
 Identities = 117/191 (61%), Positives = 147/191 (76%), Gaps = 3/191 (1%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           +DLYG++CKHMTLCL CGK+MAE +  C DCG  V +LIREYNVR+  +SEK++FIGRFV
Sbjct: 18  TDLYGSNCKHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYNVRASTSSEKNYFIGRFV 77

Query: 183 QGLPNFSKKTNSDSKWT-LKKGLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP FSKK N+++KW+ LK+G+ G+Q T+TLR+K+KNKP +LEDET Q Q+QG LEG+Q
Sbjct: 78  TGLPGFSKKKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLLEDETGQFQYQGHLEGSQ 137

Query: 360 NAAYYLLIMHGKEFVSIPAGPW--YTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLM 533
           +A YYLL+M GKEFV+IPAG W  Y FNK A YKQLTL              +GY+RW+M
Sbjct: 138 SATYYLLMMSGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAEEKMKNRRKTADGYERWMM 197

Query: 534 KTAKDGAAAFG 566
           K A +GAAAFG
Sbjct: 198 KAAHNGAAAFG 208


>ref|XP_006857695.1| hypothetical protein AMTR_s00061p00167160 [Amborella trichopoda]
           gi|548861791|gb|ERN19162.1| hypothetical protein
           AMTR_s00061p00167160 [Amborella trichopoda]
          Length = 558

 Score =  246 bits (627), Expect = 4e-63
 Identities = 114/188 (60%), Positives = 144/188 (76%), Gaps = 1/188 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           SDLYG++CKH+TLC  CGK+MAE ++ C +CG P+ +LIREYNVR+   ++K+++I RFV
Sbjct: 29  SDLYGSNCKHLTLCQSCGKTMAETRSKCYECGTPITRLIREYNVRANVNTDKTYYISRFV 88

Query: 183 QGLPNFSKKTNSDSKWTLKK-GLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP FS+K N D KWTL+K GL+G+Q TE+LR+K+KNKP +LEDET Q Q+ GQLEGAQ
Sbjct: 89  MGLPGFSRKKNGDVKWTLQKEGLQGRQVTESLREKFKNKPWLLEDETGQHQYHGQLEGAQ 148

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
           +A YYLL   GKEFV+IPAG WY FNK AQYKQLTL            N EGY+RW+MK 
Sbjct: 149 SATYYLLTNQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKNAEGYERWIMKA 208

Query: 540 AKDGAAAF 563
           A +GA+AF
Sbjct: 209 ANNGASAF 216


>ref|XP_006586768.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Glycine max]
          Length = 536

 Score =  245 bits (626), Expect = 5e-63
 Identities = 114/189 (60%), Positives = 146/189 (77%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           +DLYG++CKHMTLCL CGK+MA  +A C DCG  + +LIREYNVR+ + ++K++FIGRF+
Sbjct: 18  TDLYGSNCKHMTLCLGCGKTMAAKRAKCVDCGATLTRLIREYNVRASSPNDKNYFIGRFI 77

Query: 183 QGLPNFSKKTNSDSKWTLKK-GLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP+FSKK ++++KW+L+K GL G+Q T+TLR+KYKNKP +LEDET Q QFQG LEG+Q
Sbjct: 78  NGLPDFSKKKSAENKWSLQKDGLHGRQITDTLREKYKNKPWLLEDETGQSQFQGHLEGSQ 137

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
           +A YYLL+   KEFV+IPAG WY FNK AQYKQLTL              +GYQRW+MK 
Sbjct: 138 SATYYLLMKERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA 197

Query: 540 AKDGAAAFG 566
           A +G AAFG
Sbjct: 198 ANNGPAAFG 206


>gb|EOY28869.1| Transcription activators,DNA binding,RNA polymerase II
           transcription factors,catalytics,transcription
           initiation factors isoform 1 [Theobroma cacao]
          Length = 549

 Score =  245 bits (626), Expect = 5e-63
 Identities = 114/188 (60%), Positives = 146/188 (77%), Gaps = 1/188 (0%)
 Frame = +3

Query: 6   DLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFVQ 185
           DLYG++CKHMTLC+ CGK+MAE +  C +CG  V +LIREYNVR   +++K+ FIGRF+ 
Sbjct: 19  DLYGSNCKHMTLCVTCGKTMAENQGKCFECGAIVTRLIREYNVRPSPSTDKNFFIGRFMS 78

Query: 186 GLPNFSKKTNSDSKWTLKK-GLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQN 362
           GLP+FSKK N+++KW+L+K GL+G+Q T+ LR+KYKNKP +LEDET Q Q+QG LEG+Q+
Sbjct: 79  GLPSFSKKKNAENKWSLQKEGLQGRQLTDPLREKYKNKPWMLEDETGQAQYQGHLEGSQS 138

Query: 363 AAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKTA 542
           A YYLL+M GKEFV+IPAG WY FNK AQYKQLTL              +GY+RW+MK A
Sbjct: 139 ATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAA 198

Query: 543 KDGAAAFG 566
            +GAAAFG
Sbjct: 199 NNGAAAFG 206


>ref|XP_002322538.2| transcription initiation factor IIF alpha subunit family protein
           [Populus trichocarpa] gi|550320589|gb|EEF04299.2|
           transcription initiation factor IIF alpha subunit family
           protein [Populus trichocarpa]
          Length = 540

 Score =  244 bits (622), Expect = 1e-62
 Identities = 115/191 (60%), Positives = 147/191 (76%), Gaps = 3/191 (1%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           +DLYG++CKHMTLCL CGK+MAE +  C DCG  V +LIREYNVR+  +S+K++FIGRFV
Sbjct: 18  TDLYGSNCKHMTLCLNCGKTMAENRGKCFDCGTTVSRLIREYNVRASTSSDKNYFIGRFV 77

Query: 183 QGLPNFSKKTNSDSKWTL-KKGLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLP+FSKK N+++KW+L K+G+ G+Q T+ LR+K+KNKP +LEDET Q Q+QG LEG+Q
Sbjct: 78  TGLPSFSKKKNAENKWSLHKEGILGRQITDALREKFKNKPWLLEDETGQSQYQGHLEGSQ 137

Query: 360 NAAYYLLIMHGKEFVSIPAGPW--YTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLM 533
           +A YYLL+M GKEFV+IPAG W  Y FNK A YKQLTL              +GY+RW+M
Sbjct: 138 SATYYLLMMTGKEFVAIPAGSWYVYNFNKVAHYKQLTLEEAEEKMKNRRKTADGYERWMM 197

Query: 534 KTAKDGAAAFG 566
           K A +GAAAFG
Sbjct: 198 KAANNGAAAFG 208


>gb|EPS63331.1| hypothetical protein M569_11453, partial [Genlisea aurea]
          Length = 371

 Score =  241 bits (614), Expect = 1e-61
 Identities = 111/189 (58%), Positives = 146/189 (77%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           ++LYG++CKH+TLCL CGK MAE +A C +CG P+  LIREYNVR+  ++EK++FIGRF 
Sbjct: 23  TELYGSTCKHLTLCLSCGKRMAENRAKCYECGTPITVLIREYNVRASCSNEKNYFIGRFA 82

Query: 183 QGLPNFSKKTNSDSKWTLKK-GLKGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLPNF KK  +++KW+++K GL+G+Q T+TLR+KYKN+P +LEDET Q Q+ GQLEG+Q
Sbjct: 83  TGLPNFKKK--NENKWSMQKEGLQGRQVTDTLREKYKNRPWLLEDETGQYQYNGQLEGSQ 140

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
           +A YYLL++ GKEFV+IPAG WY FNK AQYKQLTL              +GY+RW+MK 
Sbjct: 141 SATYYLLMLQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRRTADGYERWMMKA 200

Query: 540 AKDGAAAFG 566
           A +G AAFG
Sbjct: 201 ANNGPAAFG 209


>ref|XP_002872663.1| mutant TFIIF-alpha [Arabidopsis lyrata subsp. lyrata]
           gi|297318500|gb|EFH48922.1| mutant TFIIF-alpha
           [Arabidopsis lyrata subsp. lyrata]
          Length = 619

 Score =  237 bits (605), Expect = 1e-60
 Identities = 113/189 (59%), Positives = 141/189 (74%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   SDLYGTSCKHMTLCLKCGKSMAEAKAPCSDCGIPVRKLIREYNVRSCNTSEKSHFIGRFV 182
           SDLYG+SC+HMTLCLKCG++MAE KA C DCG  + +LIREYNVR+   ++K++FIGRFV
Sbjct: 18  SDLYGSSCRHMTLCLKCGRTMAENKAKCLDCGTVLTRLIREYNVRAAAPTDKNYFIGRFV 77

Query: 183 QGLPNFSKKTNSDSKWTLKKGL-KGQQSTETLRDKYKNKPLILEDETSQLQFQGQLEGAQ 359
            GLPNF K   S++KW+L+K + +G+Q T+  R+K KNKP ILEDET Q Q+QG LEG+Q
Sbjct: 78  TGLPNFKK--GSENKWSLRKDIPQGRQFTDAQREKLKNKPWILEDETGQFQYQGHLEGSQ 135

Query: 360 NAAYYLLIMHGKEFVSIPAGPWYTFNKAAQYKQLTLXXXXXXXXXXXXNVEGYQRWLMKT 539
           +A YYLL+M  KEFV+IPAG WY FNK AQYKQLTL              +GYQRW+MK 
Sbjct: 136 SATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKA 195

Query: 540 AKDGAAAFG 566
           A +G A FG
Sbjct: 196 ANNGPALFG 204