BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00028677
         (590 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringsp...   170   2e-40
ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot viru...   117   5e-29

>gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringspot virus satellite
           RNA]
          Length = 287

 Score =  170 bits (431), Expect = 2e-40
 Identities = 90/157 (57%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
 Frame = -3

Query: 588 LVETSRDFTLFEDN--TSAVCAIPGQTPAEAESLKREFAKRALVFSGRRLQPVGLPEDLS 415
           LVET +DF LF D    + V   PGQT  EAE+L+REF KR L FSGRRL   GLP    
Sbjct: 133 LVETEKDFALFGDEFTQNQVVPCPGQTLPEAEALQREFHKRTLAFSGRRLSVSGLPS--G 190

Query: 414 SDPFASPLPRGPVPARRIAHVDPFTWANMSYGQCTRVLALYKQLCSCFGARMFQSTLYIE 235
           SDPFASP P  P    ++AHVDP +W  MS+GQC+R L LYKQLCSCFG +MF S+LY  
Sbjct: 191 SDPFASPSPVRPALTPKVAHVDPVSWEGMSFGQCSRALTLYKQLCSCFGVKMFSSSLYGM 250

Query: 234 AVRKVCKLADVVPVSIPEFIGRLGQVDFGAAPAHVYV 124
           AVRKV +L +  PV+IPE   RLGQVD  A   H++V
Sbjct: 251 AVRKVLRLREDFPVAIPENFARLGQVDRDARAVHLFV 287


>ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA]
           gi|478364|pir||JQ2018 hypothetical 36.5K protein -
           strawberry latent ringspot virus
           gi|312511|emb|CAA49480.1| 36 kDa protein [Strawberry
           latent ringspot virus satellite RNA]
          Length = 331

 Score =  117 bits (294), Expect(2) = 5e-29
 Identities = 67/132 (50%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
 Frame = -3

Query: 588 LVETSRDFTLFEDN--TSAVCAIPGQTPAEAESLKREFAKRALVFSGRRLQPVGLPEDLS 415
           LVET +DF LF D    + V   PGQT +EAESL+REF KRA  FSG+RL   GLPE   
Sbjct: 133 LVETEKDFALFCDEFTQNQVVPCPGQTLSEAESLQREFHKRAFAFSGKRLSVSGLPEG-- 190

Query: 414 SDPFASPLPR-GPVPARRIAHVDPFTWANMSYGQCTRVLALYKQLCSCFGARMFQSTLYI 238
             P  S L R       +  HVDP +W  MS+GQC+R L LY+QLC CFG +MF S+LY 
Sbjct: 191 --PIPSLLLRQSACNCPKGCHVDPVSWEGMSFGQCSRALTLYRQLCGCFGMKMFSSSLYG 248

Query: 237 EAVRKVCKLADV 202
            AVR+   L  +
Sbjct: 249 MAVRRFSALGKI 260



 Score = 36.2 bits (82), Expect(2) = 5e-29
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -1

Query: 134 TFMYSYTCSRRVCAMLSAGTWALFKD 57
           T +YSYT S R   M+ +GTWA FKD
Sbjct: 283 TSLYSYTSSSRFVPMIRSGTWAFFKD 308