BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00028649
         (379 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringsp...   122   4e-26
ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot viru...   122   5e-26

>gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringspot virus satellite
           RNA]
          Length = 287

 Score =  122 bits (307), Expect = 4e-26
 Identities = 66/108 (61%), Positives = 77/108 (71%), Gaps = 7/108 (6%)
 Frame = +2

Query: 56  MLPKRVRVISKSTGRIFTVGRHDLHLLPSGKRAWVPLRNPTVAGGSSRRERPRKAVTKQP 235
           +LPKRVRV+SK +GRIFTVGRHDLH+LPSGKRAWVP+R P  AGG+ RRERP     K  
Sbjct: 13  VLPKRVRVVSKRSGRIFTVGRHDLHVLPSGKRAWVPVRAPIAAGGNFRRERPLVVSHKTQ 72

Query: 236 VVRPIRAP--VKVENRFSPLCVEESLPAP-----KSKYSYADAVRAKA 358
            VRPIR P  VK  NRF+PL V+E + A        K SYADA+R+ A
Sbjct: 73  QVRPIRMPAAVKTSNRFAPLSVKEGVTAAVAAPINPKKSYADALRSSA 120


>ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA]
           gi|478364|pir||JQ2018 hypothetical 36.5K protein -
           strawberry latent ringspot virus
           gi|312511|emb|CAA49480.1| 36 kDa protein [Strawberry
           latent ringspot virus satellite RNA]
          Length = 331

 Score =  122 bits (306), Expect = 5e-26
 Identities = 69/110 (62%), Positives = 76/110 (69%), Gaps = 8/110 (7%)
 Frame = +2

Query: 53  GMLPKRVRVISKSTGRIFTVGRHDLHLLPSGKRAWVPLRNPTVAGGSSRRERPRKAVTKQ 232
           G+LPKRVRVISK   RIFTVGRHDLH+LPSGKRAWVP+R P  AGGS RRERP     K 
Sbjct: 12  GVLPKRVRVISKRRARIFTVGRHDLHVLPSGKRAWVPVRAPIAAGGSFRRERPPVVSHKT 71

Query: 233 PVVRPIRAP--VKVENRFSPLCVEESLPA------PKSKYSYADAVRAKA 358
             VRPIR P  VK  NRF+ L V+E  P       PK K SYADA+R+ A
Sbjct: 72  QQVRPIRTPTAVKTSNRFASLSVKEEAPEAVAPFNPKKK-SYADALRSSA 120