BLASTX nr result
ID: Ephedra27_contig00028578
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00028578
(496 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006576583.1| PREDICTED: pentatricopeptide repeat-containi... 101 1e-19
ref|XP_006576582.1| PREDICTED: pentatricopeptide repeat-containi... 101 1e-19
ref|XP_006576581.1| PREDICTED: pentatricopeptide repeat-containi... 101 1e-19
ref|XP_006468579.1| PREDICTED: pentatricopeptide repeat-containi... 100 2e-19
ref|XP_006448595.1| hypothetical protein CICLE_v10014221mg [Citr... 100 2e-19
ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata] g... 100 2e-19
ref|NP_567948.1| pentatricopeptide repeat-containing protein [Ar... 100 3e-19
ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 100 3e-19
ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containi... 100 3e-19
ref|XP_001761392.1| predicted protein [Physcomitrella patens] gi... 100 3e-19
gb|AFW62799.1| putative pentatricopeptide repeat family protein ... 99 5e-19
emb|CBI25078.3| unnamed protein product [Vitis vinifera] 99 5e-19
ref|XP_004298334.1| PREDICTED: putative pentatricopeptide repeat... 99 6e-19
gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygr... 99 6e-19
ref|XP_006363206.1| PREDICTED: pentatricopeptide repeat-containi... 99 8e-19
ref|XP_004298471.1| PREDICTED: pentatricopeptide repeat-containi... 99 8e-19
ref|XP_004250455.1| PREDICTED: pentatricopeptide repeat-containi... 99 8e-19
ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containi... 99 8e-19
gb|EXC24155.1| hypothetical protein L484_015170 [Morus notabilis] 98 1e-18
ref|XP_006663835.1| PREDICTED: pentatricopeptide repeat-containi... 98 1e-18
>ref|XP_006576583.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like isoform X3 [Glycine max]
Length = 652
Score = 101 bits (251), Expect = 1e-19
Identities = 43/86 (50%), Positives = 62/86 (72%)
Frame = +1
Query: 58 NLTVRTDDSVQMKQHSYHSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKAT 237
++ + DD+++ K YHSE++ A L+ P+ + I V KNLRVCSDCH ++F+SK T
Sbjct: 567 SVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVT 626
Query: 238 KRKIILRDIRRYHHFENGTCSCGGFW 315
+R II+RDI R+HHF NG+CSCG +W
Sbjct: 627 ERNIIVRDISRFHHFSNGSCSCGDYW 652
>ref|XP_006576582.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like isoform X2 [Glycine max]
Length = 690
Score = 101 bits (251), Expect = 1e-19
Identities = 43/86 (50%), Positives = 62/86 (72%)
Frame = +1
Query: 58 NLTVRTDDSVQMKQHSYHSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKAT 237
++ + DD+++ K YHSE++ A L+ P+ + I V KNLRVCSDCH ++F+SK T
Sbjct: 605 SVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVT 664
Query: 238 KRKIILRDIRRYHHFENGTCSCGGFW 315
+R II+RDI R+HHF NG+CSCG +W
Sbjct: 665 ERNIIVRDISRFHHFSNGSCSCGDYW 690
>ref|XP_006576581.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like isoform X1 [Glycine max]
Length = 698
Score = 101 bits (251), Expect = 1e-19
Identities = 43/86 (50%), Positives = 62/86 (72%)
Frame = +1
Query: 58 NLTVRTDDSVQMKQHSYHSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKAT 237
++ + DD+++ K YHSE++ A L+ P+ + I V KNLRVCSDCH ++F+SK T
Sbjct: 613 SVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVT 672
Query: 238 KRKIILRDIRRYHHFENGTCSCGGFW 315
+R II+RDI R+HHF NG+CSCG +W
Sbjct: 673 ERNIIVRDISRFHHFSNGSCSCGDYW 698
>ref|XP_006468579.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Citrus sinensis]
Length = 882
Score = 100 bits (250), Expect = 2e-19
Identities = 42/69 (60%), Positives = 54/69 (78%)
Frame = +1
Query: 109 HSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKATKRKIILRDIRRYHHFEN 288
HSE+L A ++NTP IRV KNLRVC+DCH+ +F+SK R+IILRD+RR+HHF+N
Sbjct: 814 HSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKN 873
Query: 289 GTCSCGGFW 315
GTCSCG +W
Sbjct: 874 GTCSCGDYW 882
>ref|XP_006448595.1| hypothetical protein CICLE_v10014221mg [Citrus clementina]
gi|557551206|gb|ESR61835.1| hypothetical protein
CICLE_v10014221mg [Citrus clementina]
Length = 882
Score = 100 bits (250), Expect = 2e-19
Identities = 42/69 (60%), Positives = 54/69 (78%)
Frame = +1
Query: 109 HSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKATKRKIILRDIRRYHHFEN 288
HSE+L A ++NTP IRV KNLRVC+DCH+ +F+SK R+IILRD+RR+HHF+N
Sbjct: 814 HSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKN 873
Query: 289 GTCSCGGFW 315
GTCSCG +W
Sbjct: 874 GTCSCGDYW 882
>ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata
subsp. lyrata]
Length = 824
Score = 100 bits (250), Expect = 2e-19
Identities = 41/69 (59%), Positives = 53/69 (76%)
Frame = +1
Query: 109 HSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKATKRKIILRDIRRYHHFEN 288
HSE+L A LI TP++ IR+FKNLRVC DCH +F+SK T+R+II+RD R+HHF+N
Sbjct: 756 HSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKN 815
Query: 289 GTCSCGGFW 315
G CSCG +W
Sbjct: 816 GVCSCGDYW 824
>ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 100 bits (248), Expect = 3e-19
Identities = 41/69 (59%), Positives = 53/69 (76%)
Frame = +1
Query: 109 HSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKATKRKIILRDIRRYHHFEN 288
HSE+L A LI TP++ IR+FKNLRVC DCH +F+SK T+R+II+RD R+HHF+N
Sbjct: 755 HSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKN 814
Query: 289 GTCSCGGFW 315
G CSCG +W
Sbjct: 815 GVCSCGDYW 823
>ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 99.8 bits (247), Expect = 3e-19
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = +1
Query: 106 YHSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKATKRKIILRDIRRYHHFE 285
YHSE+L A LI+TP IRV KNLRVC DCH ++ +SK T+R+I+LRD R+HHF
Sbjct: 1504 YHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFR 1563
Query: 286 NGTCSCGGFW 315
NGTCSCG +W
Sbjct: 1564 NGTCSCGDYW 1573
>ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 99.8 bits (247), Expect = 3e-19
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = +1
Query: 106 YHSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKATKRKIILRDIRRYHHFE 285
YHSE+L A LI+TP IRV KNLRVC DCH ++ +SK T+R+I+LRD R+HHF
Sbjct: 1504 YHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFR 1563
Query: 286 NGTCSCGGFW 315
NGTCSCG +W
Sbjct: 1564 NGTCSCGDYW 1573
>ref|XP_001761392.1| predicted protein [Physcomitrella patens] gi|162687398|gb|EDQ73781.1|
predicted protein [Physcomitrella patens]
Length = 833
Score = 99.8 bits (247), Expect = 3e-19
Identities = 46/92 (50%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Frame = +1
Query: 46 YIHVNLTVRTDDSVQMKQH--SYHSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFME 219
YI + V D Q K+ SYHSE+L A +++ PS IR++KNLRVCSDCH +
Sbjct: 742 YIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHSASK 801
Query: 220 FVSKATKRKIILRDIRRYHHFENGTCSCGGFW 315
F+SK T R+II RD R+HHF++G CSCG +W
Sbjct: 802 FISKVTGREIIARDASRFHHFKDGVCSCGDYW 833
>gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 99.4 bits (246), Expect = 5e-19
Identities = 42/71 (59%), Positives = 53/71 (74%)
Frame = +1
Query: 103 SYHSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKATKRKIILRDIRRYHHF 282
S+HSE+L A LI+TPS IRV KNLR+C DCH +++SK R+II+RDI R+HHF
Sbjct: 812 SHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINRFHHF 871
Query: 283 ENGTCSCGGFW 315
NGTCSCG +W
Sbjct: 872 TNGTCSCGDYW 882
>emb|CBI25078.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 99.4 bits (246), Expect = 5e-19
Identities = 46/98 (46%), Positives = 66/98 (67%), Gaps = 2/98 (2%)
Frame = +1
Query: 28 WN*KVLYIHVNLTVRTDDSVQMKQH--SYHSEQLVTALVLINTPSEVAIRVFKNLRVCSD 201
WN + Y L +D K+H + HSE+L A +I+TP + AIR+FKNLRVC D
Sbjct: 400 WNAIISYYSFVLQDVEEDE---KEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGD 456
Query: 202 CHRFMEFVSKATKRKIILRDIRRYHHFENGTCSCGGFW 315
CH +F+S+ T+R+I++RD +R+HHF+NG CSCG +W
Sbjct: 457 CHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 494
>ref|XP_004298334.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Fragaria vesca subsp. vesca]
Length = 743
Score = 99.0 bits (245), Expect = 6e-19
Identities = 45/80 (56%), Positives = 58/80 (72%)
Frame = +1
Query: 76 DDSVQMKQHSYHSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKATKRKIIL 255
D+ +MK +YHSE+L A LI PS + IRV KNLRVC DCH +++SK TKR+I++
Sbjct: 664 DELQKMKMLNYHSERLAIAFGLIFIPSGLPIRVVKNLRVCGDCHNATKYISKITKREILV 723
Query: 256 RDIRRYHHFENGTCSCGGFW 315
RD RYH F++GTCSCG FW
Sbjct: 724 RDAVRYHLFKDGTCSCGDFW 743
>gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 99.0 bits (245), Expect = 6e-19
Identities = 47/92 (51%), Positives = 60/92 (65%), Gaps = 2/92 (2%)
Frame = +1
Query: 46 YIHVNLTVRTDDSVQMKQH--SYHSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFME 219
YI V V + Q K+ SYHSE+L A +++ PS IR+FKNLRVC DCH +
Sbjct: 746 YIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASK 805
Query: 220 FVSKATKRKIILRDIRRYHHFENGTCSCGGFW 315
F+SK T R+II RD R+HHF+NG CSCG +W
Sbjct: 806 FISKVTGREIIARDASRFHHFKNGVCSCGDYW 837
>ref|XP_006363206.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Solanum tuberosum]
Length = 889
Score = 98.6 bits (244), Expect = 8e-19
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = +1
Query: 109 HSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKATKRKIILRDIRRYHHFEN 288
HSE+L A ++NTP IR+ KNLRVC+DCH +F+SK R+II+RD+RR+HHF N
Sbjct: 821 HSEKLAIAFGILNTPPGTPIRIAKNLRVCNDCHEATKFISKIVNREIIVRDVRRFHHFRN 880
Query: 289 GTCSCGGFW 315
GTCSCG +W
Sbjct: 881 GTCSCGDYW 889
>ref|XP_004298471.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial-like [Fragaria vesca subsp. vesca]
Length = 614
Score = 98.6 bits (244), Expect = 8e-19
Identities = 43/71 (60%), Positives = 53/71 (74%)
Frame = +1
Query: 103 SYHSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKATKRKIILRDIRRYHHF 282
S+HSE+L A L++ E +IRV KNLR+C DCH F +FVSKATKR+II+RD R+HHF
Sbjct: 544 SHHSEKLAIAFSLLSLQPECSIRVVKNLRICDDCHSFCKFVSKATKREIIMRDKIRFHHF 603
Query: 283 ENGTCSCGGFW 315
NG CSC FW
Sbjct: 604 RNGECSCNNFW 614
>ref|XP_004250455.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Solanum lycopersicum]
Length = 653
Score = 98.6 bits (244), Expect = 8e-19
Identities = 42/80 (52%), Positives = 55/80 (68%)
Frame = +1
Query: 76 DDSVQMKQHSYHSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKATKRKIIL 255
D + ++ YHSE+L A L+N+PS IR+ KN+RVC DCH +FVSK R+IIL
Sbjct: 574 DQQEREERLQYHSERLALAFALLNSPSGSPIRIKKNIRVCGDCHTAFKFVSKVVDREIIL 633
Query: 256 RDIRRYHHFENGTCSCGGFW 315
RD R+HHF NG+CSCG +W
Sbjct: 634 RDTNRFHHFRNGSCSCGDYW 653
>ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like
[Vitis vinifera]
Length = 848
Score = 98.6 bits (244), Expect = 8e-19
Identities = 41/76 (53%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Frame = +1
Query: 94 KQH--SYHSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKATKRKIILRDIR 267
K+H + HSE+L A +I+TP + AIR+FKNLRVC DCH +F+S+ T+R+I++RD +
Sbjct: 773 KEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSK 832
Query: 268 RYHHFENGTCSCGGFW 315
R+HHF+NG CSCG +W
Sbjct: 833 RFHHFKNGICSCGDYW 848
>gb|EXC24155.1| hypothetical protein L484_015170 [Morus notabilis]
Length = 602
Score = 98.2 bits (243), Expect = 1e-18
Identities = 42/83 (50%), Positives = 59/83 (71%)
Frame = +1
Query: 67 VRTDDSVQMKQHSYHSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKATKRK 246
++ D+ + YHSE++ A LI+T E +R+ KNLR+C DCH F++FVSK KRK
Sbjct: 520 LKIDEEEKQTILHYHSEKIAIAFGLISTGPETPLRIVKNLRICEDCHAFIKFVSKIYKRK 579
Query: 247 IILRDIRRYHHFENGTCSCGGFW 315
II+RD +R+HHFE+GTCSC +W
Sbjct: 580 IIVRDRKRFHHFEHGTCSCMDYW 602
>ref|XP_006663835.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Oryza brachyantha]
Length = 630
Score = 97.8 bits (242), Expect = 1e-18
Identities = 44/83 (53%), Positives = 59/83 (71%)
Frame = +1
Query: 67 VRTDDSVQMKQHSYHSEQLVTALVLINTPSEVAIRVFKNLRVCSDCHRFMEFVSKATKRK 246
V TD ++ + HSE+L A LI+ P V I ++KNLR+C DCH FM+ VS T+RK
Sbjct: 550 VHTDQKEELLKD--HSEKLAFAFGLISLPPNVPITIYKNLRICGDCHSFMKIVSCITERK 607
Query: 247 IILRDIRRYHHFENGTCSCGGFW 315
II+RDI R+HHF++G+CSCG FW
Sbjct: 608 IIVRDINRFHHFKDGSCSCGDFW 630