BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00027953
         (603 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAC82619.1| pol-like protein [Danio rerio]                         56   9e-12
gb|AGO18322.1| reverse transcriptase, partial [Clarias batrachus]      54   1e-11
ref|XP_006010939.1| PREDICTED: uncharacterized protein LOC102354...    48   3e-11
ref|XP_004911398.1| PREDICTED: uncharacterized protein LOC101731...    72   9e-11
prf||1207289A reverse transcriptase related protein                    54   9e-11
gb|EPS63383.1| hypothetical protein M569_11401 [Genlisea aurea]        50   1e-10
ref|XP_004911591.1| PREDICTED: uncharacterized protein LOC101732...    72   2e-10
gb|AAC51279.1| putative p150 [Homo sapiens]                            52   2e-10
gb|AER41895.1| unknown [Homo sapiens]                                  52   2e-10
ref|XP_006013059.1| PREDICTED: uncharacterized protein LOC102364...    48   2e-10
gb|ELR59055.1| hypothetical protein M91_11778 [Bos mutus]              46   2e-10
gb|AAC51269.1| putative p150 [Homo sapiens]                            52   2e-10
ref|WP_000408384.1| Endonuclease, partial [Streptococcus agalact...    52   2e-10
gb|ELR48591.1| hypothetical protein M91_17934 [Bos mutus]              46   3e-10
gb|ELR44776.1| hypothetical protein M91_14132 [Bos mutus]              46   3e-10
gb|ELR47881.1| hypothetical protein M91_03766 [Bos mutus]              46   3e-10
gb|ELR54609.1| hypothetical protein M91_07551 [Bos mutus]              46   3e-10
pir||B34087 hypothetical protein (L1H 3' region) - human               52   3e-10
gb|AAB59368.1| ORF2 contains a reverse transcriptase domain [Hom...    52   3e-10
pir||S65824 reverse transcriptase homolog - human transposon L1....    52   3e-10

>dbj|BAC82619.1| pol-like protein [Danio rerio]
          Length = 1197

 Score = 56.2 bits (134), Expect(2) = 9e-12
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
 Frame = +2

Query: 389 IKHDFYITALANGQFNPSFNEGIITLIPKD-GDKTRITNWRPISLLNTSYKIFAKTIAIK 565
           I  D +I     GQ + S  +G+I +I K+ GDK  + N+RP+S+LNT YKI AK +A +
Sbjct: 483 ILKDLFIAIFKKGQLSESMKKGMIKIIYKNKGDKDYLQNYRPLSMLNTDYKILAKILANR 542

Query: 566 LKPV 577
           LK V
Sbjct: 543 LKKV 546



 Score = 39.7 bits (91), Expect(2) = 9e-12
 Identities = 23/79 (29%), Positives = 36/79 (45%)
 Frame = +1

Query: 136 DPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHPISNECSNSLENLFTIQDFSAALN 315
           D   I+    ++Y   F +K          LN +   +S E     ++  T ++ + A+ 
Sbjct: 396 DKESILRTVKDFYETLFKAKGVHEEDKDFLLNQIKVKVSEEDKKLCDSDITEEEINEAIT 455

Query: 316 QLPNHKMPSPDGLTIEFYK 372
           QL N K P  DGL+ EFYK
Sbjct: 456 QLSNGKSPGLDGLSSEFYK 474


>gb|AGO18322.1| reverse transcriptase, partial [Clarias batrachus]
          Length = 1250

 Score = 53.9 bits (128), Expect(2) = 1e-11
 Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = +2

Query: 410 TALANGQFNPSFNEGIITLIPKDG-DKTRITNWRPISLLNTSYKIFAKTIAIKLKPV 577
           T L  G+  PS++E +I++IPK+G DK   +++RPIS+LN  YK+F   +A +L+ +
Sbjct: 497 TTLMEGEIPPSWSEAVISVIPKEGKDKLECSSYRPISILNVDYKLFTTILAKRLEKI 553



 Score = 41.6 bits (96), Expect(2) = 1e-11
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
 Frame = +1

Query: 160 FANYYTDSFSSKH-PTSNKIQQFLNLVSHPISNECSN-SLENLFTIQDFSAALNQLPNHK 333
           F NYY   ++  H     +I+QFLN ++ P++ E  N +L    T  + + A++ L  +K
Sbjct: 409 FKNYYKLLYTQPHLKDGQQIEQFLNSLNLPVATEEQNQTLIAERTEAELNNAISNLKANK 468

Query: 334 MPSPDGLTIEFYK 372
            P PDG   E+YK
Sbjct: 469 SPGPDGFPSEWYK 481


>ref|XP_006010939.1| PREDICTED: uncharacterized protein LOC102354747 [Latimeria
           chalumnae]
          Length = 628

 Score = 48.1 bits (113), Expect(2) = 3e-11
 Identities = 24/80 (30%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
 Frame = +1

Query: 142 LHIVTAFANYYTDSFSSKHPTSNK-IQQFLN-LVSHPISNECSNSLENLFTIQDFSAALN 315
           + I   F+ YY + +S++   S + I+++L+ ++   + ++   +LEN  ++++   A++
Sbjct: 46  MEINAEFSKYYEELYSTECEISPQYIKEYLDSMIMQSLDDDGRETLENPISVEEIIQAIS 105

Query: 316 QLPNHKMPSPDGLTIEFYKK 375
            L + K PSPDG  IEFYK+
Sbjct: 106 DLSSGKSPSPDGFLIEFYKR 125



 Score = 46.2 bits (108), Expect(2) = 3e-11
 Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = +2

Query: 413 ALANGQFNPSFNEGIITLIPKDG-DKTRITNWRPISLLNTSYKIFAKTIAIKLKPV 577
           +L +G    S    IITLIPK G D     ++RPISLLNT  KI AK +A +L+ V
Sbjct: 141 SLRDGTLPLSMRNAIITLIPKPGKDPQEPRSYRPISLLNTDMKILAKVLASRLETV 196


>ref|XP_004911398.1| PREDICTED: uncharacterized protein LOC101731061 [Xenopus (Silurana)
           tropicalis]
          Length = 830

 Score = 72.4 bits (176), Expect = 9e-11
 Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 8/95 (8%)
 Frame = +2

Query: 317 NFLITKCPVQMDLQLNFTKKKWDFIKHD--------FYITALANGQFNPSFNEGIITLIP 472
           +F   K P    + + F  + W+ +K D        FY  AL +     S+ +G+I L+P
Sbjct: 437 SFKRNKLPGLEGIPIEFYLRFWNILKSDLLCLFNKCFYCKALPS-----SWKKGVIVLLP 491

Query: 473 KDGDKTRITNWRPISLLNTSYKIFAKTIAIKLKPV 577
           KDGDKT++ NWRPI+LLNT YKI AK +A ++K V
Sbjct: 492 KDGDKTQLKNWRPITLLNTDYKILAKLLANRMKEV 526


>prf||1207289A reverse transcriptase related protein
          Length = 1259

 Score = 53.5 bits (127), Expect(2) = 9e-11
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = +1

Query: 136 DPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAAL 312
           DP  I T    YY   +++K     ++ +FL+  + P ++ E   SL    T  +  A +
Sbjct: 402 DPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITSSEIEAII 461

Query: 313 NQLPNHKMPSPDGLTIEFYKK 375
           N LPN K P P+G T EFY++
Sbjct: 462 NSLPNKKSPGPEGFTAEFYQR 482



 Score = 38.9 bits (89), Expect(2) = 9e-11
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +2

Query: 440 SFNEGIITLIPKDG-DKTRITNWRPISLLNTSYKIFAKTIAIKLK 571
           SF E  I LIPK G D T+  N+RPISL+N   KI  K +A +++
Sbjct: 507 SFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANQIQ 551


>gb|EPS63383.1| hypothetical protein M569_11401 [Genlisea aurea]
          Length = 1469

 Score = 50.4 bits (119), Expect(2) = 1e-10
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = +2

Query: 365  FTKKKWDFIKH---DFYITALANGQFNPSFNEGIITLIPKDGDKTRITNWRPISLLNTSY 535
            F +K W  +     +  +  L NG   P  N   I LIPK  +     ++RPISL N +Y
Sbjct: 831  FYQKYWPTVGQATVEAVLKLLNNGVMEPQLNHSHIVLIPKKSNPQEPAHYRPISLSNVAY 890

Query: 536  KIFAKTIAIKLKPV 577
            KI +K +A +LKP+
Sbjct: 891  KIASKMVANRLKPI 904



 Score = 41.6 bits (96), Expect(2) = 1e-10
 Identities = 19/76 (25%), Positives = 39/76 (51%)
 Frame = +1

Query: 148 IVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHPISNECSNSLENLFTIQDFSAALNQLPN 327
           ++T   +YY D F+S  P   ++++ L+++   I+++    LE  +   +   A+ ++  
Sbjct: 759 VITTMLSYYQDLFTSSPPDPIEMERALSIIPRTITDDMRAILERPYNAAEVWPAVRRMKP 818

Query: 328 HKMPSPDGLTIEFYKK 375
              P PDG    FY+K
Sbjct: 819 LSSPGPDGFPPVFYQK 834


>ref|XP_004911591.1| PREDICTED: uncharacterized protein LOC101732058 [Xenopus (Silurana)
           tropicalis]
          Length = 875

 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
 Frame = +2

Query: 317 NFLITKCPVQMDLQLNFTKKKWDFIKHDFYIT---ALANGQFNPSFNEGIITLIPKDGDK 487
           +F   K P +  L + F  + W+ +K D ++    +  +    PS+  GI++LI K GDK
Sbjct: 640 SFSFAKAPGEDSLPVEFYLRFWEILKDDLFLVFKESFLSDTLPPSWRRGIVSLIFKKGDK 699

Query: 488 TRITNWRPISLLNTSYKIFAKTIAIKLKP 574
            R+ N+RPI+LLN  YK+ AK I+++LKP
Sbjct: 700 ERLENYRPITLLNVDYKVMAKLISLRLKP 728


>gb|AAC51279.1| putative p150 [Homo sapiens]
          Length = 1275

 Score = 52.4 bits (124), Expect(2) = 2e-10
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +1

Query: 136 DPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHPISN-ECSNSLENLFTIQDFSAAL 312
           DP  I T    YY   +++K     ++  FLN  + P  N E   SL    T  +  A +
Sbjct: 403 DPTEIQTTIREYYKHLYANKLENLEEMDTFLNTYTLPTLNQEEVESLNRPITGSEIVAII 462

Query: 313 NQLPNHKMPSPDGLTIEFYKK 375
           N LP  K P PDG T EFY++
Sbjct: 463 NSLPTKKSPGPDGFTAEFYQR 483



 Score = 39.3 bits (90), Expect(2) = 2e-10
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +2

Query: 440 SFNEGIITLIPKDG-DKTRITNWRPISLLNTSYKIFAKTIAIKLK 571
           SF E  I LIPK G D T+  N+RPISL+N   KI  K +A +++
Sbjct: 508 SFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQ 552


>gb|AER41895.1| unknown [Homo sapiens]
          Length = 1275

 Score = 52.4 bits (124), Expect(2) = 2e-10
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +1

Query: 136 DPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAAL 312
           DP  I T    YY   +++K     ++  FLN  + P ++ E   SL    T  +  A +
Sbjct: 403 DPTEIQTTIREYYKHLYANKLENLEEMDTFLNTYTLPRLNQEEVESLNRPITGSEIVAII 462

Query: 313 NQLPNHKMPSPDGLTIEFYKK 375
           N LP  K P PDG T EFY++
Sbjct: 463 NSLPTKKSPGPDGFTAEFYQR 483



 Score = 39.3 bits (90), Expect(2) = 2e-10
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +2

Query: 440 SFNEGIITLIPKDG-DKTRITNWRPISLLNTSYKIFAKTIAIKLK 571
           SF E  I LIPK G D T+  N+RPISL+N   KI  K +A +++
Sbjct: 508 SFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQ 552


>ref|XP_006013059.1| PREDICTED: uncharacterized protein LOC102364438 [Latimeria chalumnae]
          Length = 2113

 Score = 47.8 bits (112), Expect(2) = 2e-10
 Identities = 21/52 (40%), Positives = 34/52 (65%)
 Frame = +2

Query: 416  LANGQFNPSFNEGIITLIPKDGDKTRITNWRPISLLNTSYKIFAKTIAIKLK 571
            L N +   SF++ ++ L+ K+G   +I NWRPI LLN+ YKI A+ +  +L+
Sbjct: 1429 LKNQKLLDSFSDSLLILMFKNGQGDKIVNWRPIMLLNSDYKILARVLNFRLQ 1480



 Score = 43.5 bits (101), Expect(2) = 2e-10
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +1

Query: 130  LADPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHPISNEC-SNSLENLFTIQDFSA 306
            +A  + I  A A ++   FS K  +  +I+ FLN    P+     + +L      ++   
Sbjct: 1330 VAHGVEIPRAVAEHFERFFSEKDASREEIECFLNSFEPPLLGALGATALMVPIFCEEIKI 1389

Query: 307  ALNQLPNHKMPSPDGLTIEFYK 372
            AL  LP  K P  DG+TIEFY+
Sbjct: 1390 ALESLPTSKSPGSDGITIEFYR 1411



 Score = 44.7 bits (104), Expect(2) = 8e-08
 Identities = 21/46 (45%), Positives = 29/46 (63%)
 Frame = +2

Query: 440 SFNEGIITLIPKDGDKTRITNWRPISLLNTSYKIFAKTIAIKLKPV 577
           +F + ++ LI K G +  I NWRPI LLN  YKI A+ + I L+ V
Sbjct: 560 TFPDSLLVLIFKKGQRDDIVNWRPIMLLNVDYKILARILNIWLQSV 605



 Score = 37.7 bits (86), Expect(2) = 8e-08
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +1

Query: 142 LHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHPISNECSNS-LENLFTIQDFSAALNQ 318
           L I  A A Y+   FS K  +  KI+++L      +      S L    T ++   A+  
Sbjct: 457 LGISEAMAEYFEGFFSGKDVSQKKIKRYLGRYDLLVLGAIEASPLIAPITCEEIKKAIEG 516

Query: 319 LPNHKMPSPDGLTIEFYK 372
           LP  K P  D +T+EFY+
Sbjct: 517 LPLSKSPGSDRITVEFYR 534


>gb|ELR59055.1| hypothetical protein M91_11778 [Bos mutus]
          Length = 1272

 Score = 45.8 bits (107), Expect(2) = 2e-10
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
 Frame = +2

Query: 425 GQFNPSFNEGIITLIPK-DGDKTRITNWRPISLLNTSYKIFAKTIAIKLK 571
           G+   SF E  ITLIPK D D T+  N+RPISL+N   KI  K +AI+++
Sbjct: 502 GKLPNSFYEATITLIPKPDKDPTKKENYRPISLMNIDAKILNKILAIRIQ 551



 Score = 45.4 bits (106), Expect(2) = 2e-10
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +1

Query: 118 SHSFLADPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQ 294
           S     D + I     +YY   +++K     ++ +FL   + P +  E   +L    T  
Sbjct: 396 SGEITTDNIEIQRIIRDYYQQLYANKMDNVEEMDKFLEKYNFPKLDQEEIENLNRPITSM 455

Query: 295 DFSAALNQLPNHKMPSPDGLTIEFYKK 375
           +    +  LP +K P PDG T EFY+K
Sbjct: 456 EIETVIKNLPANKSPGPDGFTAEFYQK 482


>gb|AAC51269.1| putative p150 [Homo sapiens]
          Length = 1275

 Score = 52.0 bits (123), Expect(2) = 2e-10
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +1

Query: 136 DPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAAL 312
           DP  I T    YY   +++K     ++  FL+  + P ++ E   SL    T  +  A +
Sbjct: 403 DPTEIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRRITGSEIVAII 462

Query: 313 NQLPNHKMPSPDGLTIEFYKKKM 381
           N LP  K P PDG T EFY++ M
Sbjct: 463 NSLPTKKSPGPDGFTAEFYQRYM 485



 Score = 39.3 bits (90), Expect(2) = 2e-10
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +2

Query: 440 SFNEGIITLIPKDG-DKTRITNWRPISLLNTSYKIFAKTIAIKLK 571
           SF E  I LIPK G D T+  N+RPISL+N   KI  K +A +++
Sbjct: 508 SFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQ 552


>ref|WP_000408384.1| Endonuclease, partial [Streptococcus agalactiae]
           gi|527576660|gb|EPT69641.1| endonuclease, partial
           [Streptococcus agalactiae CCUG 38383]
          Length = 1130

 Score = 52.0 bits (123), Expect(2) = 2e-10
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +1

Query: 136 DPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAAL 312
           DP  I T    YY   +++K     ++ +FL+  + P ++ E   SL    T  +  A +
Sbjct: 258 DPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITGSEIEAII 317

Query: 313 NQLPNHKMPSPDGLTIEFYKK 375
           N LP  K P PDG T EFY++
Sbjct: 318 NSLPTKKSPGPDGFTAEFYQR 338



 Score = 39.3 bits (90), Expect(2) = 2e-10
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +2

Query: 440 SFNEGIITLIPKDG-DKTRITNWRPISLLNTSYKIFAKTIAIKLK 571
           SF E  I LIPK G D T+  N+RPISL+N   KI  K +A +++
Sbjct: 363 SFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQ 407


>gb|ELR48591.1| hypothetical protein M91_17934 [Bos mutus]
          Length = 1273

 Score = 45.8 bits (107), Expect(2) = 3e-10
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
 Frame = +2

Query: 425 GQFNPSFNEGIITLIPK-DGDKTRITNWRPISLLNTSYKIFAKTIAIKLK 571
           G+   SF E  ITLIPK D D T+  N+RPISL+N   KI  K +AI+++
Sbjct: 501 GKLPNSFYEATITLIPKPDKDPTKKENYRPISLMNIDAKILNKILAIRIQ 550



 Score = 45.1 bits (105), Expect(2) = 3e-10
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +1

Query: 118 SHSFLADPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQ 294
           S     D + I     +YY   +++K     ++ +FL     P +  E   +L    T  
Sbjct: 395 SGEITTDNIEIQRIIRDYYQQLYANKMDNVEEMDKFLEKYDFPKLDQEEIENLNRPITSS 454

Query: 295 DFSAALNQLPNHKMPSPDGLTIEFYKK 375
           +    +  LP +K P PDG T EFY+K
Sbjct: 455 EIETVIKNLPANKSPGPDGFTAEFYQK 481


>gb|ELR44776.1| hypothetical protein M91_14132 [Bos mutus]
          Length = 1272

 Score = 45.8 bits (107), Expect(2) = 3e-10
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
 Frame = +2

Query: 425 GQFNPSFNEGIITLIPK-DGDKTRITNWRPISLLNTSYKIFAKTIAIKLK 571
           G+   SF E  ITLIPK D D T+  N+RPISL+N   KI  K +AI+++
Sbjct: 502 GKLPNSFYEATITLIPKPDKDPTKKENYRPISLMNIDAKILNKILAIRIQ 551



 Score = 45.1 bits (105), Expect(2) = 3e-10
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +1

Query: 118 SHSFLADPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQ 294
           S     D + I     +YY   +++K     ++ +FL     P +  E   +L    T  
Sbjct: 396 SGEITTDNIEIQRIIRDYYQQLYANKMDNVEEMDKFLEKYDFPKLDQEEIENLNRPITSS 455

Query: 295 DFSAALNQLPNHKMPSPDGLTIEFYKK 375
           +    +  LP +K P PDG T EFY+K
Sbjct: 456 EIETVIKNLPANKSPGPDGFTAEFYQK 482


>gb|ELR47881.1| hypothetical protein M91_03766 [Bos mutus]
          Length = 1260

 Score = 45.8 bits (107), Expect(2) = 3e-10
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
 Frame = +2

Query: 425 GQFNPSFNEGIITLIPK-DGDKTRITNWRPISLLNTSYKIFAKTIAIKLK 571
           G+   SF E  ITLIPK D D T+  N+RPISL+N   KI  K +AI+++
Sbjct: 501 GKLPNSFYEATITLIPKPDKDPTKKENYRPISLMNIDAKILNKILAIRIQ 550



 Score = 45.1 bits (105), Expect(2) = 3e-10
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +1

Query: 118 SHSFLADPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQ 294
           S     D + I     +YY   +++K     ++ +FL     P +  E   +L    T  
Sbjct: 395 SGEITTDNIEIQRIIRDYYQQLYANKMDNVEEMDKFLEKYDFPKLDQEEIENLNRPITSS 454

Query: 295 DFSAALNQLPNHKMPSPDGLTIEFYKK 375
           +    +  LP +K P PDG T EFY+K
Sbjct: 455 EIETVIKNLPANKSPGPDGFTAEFYQK 481


>gb|ELR54609.1| hypothetical protein M91_07551 [Bos mutus]
          Length = 1142

 Score = 45.8 bits (107), Expect(2) = 3e-10
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
 Frame = +2

Query: 425 GQFNPSFNEGIITLIPK-DGDKTRITNWRPISLLNTSYKIFAKTIAIKLK 571
           G+   SF E  ITLIPK D D T+  N+RPISL+N   KI  K +AI+++
Sbjct: 372 GKLPNSFYEATITLIPKPDKDPTKKENYRPISLMNIDAKILNKILAIRIQ 421



 Score = 45.1 bits (105), Expect(2) = 3e-10
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +1

Query: 118 SHSFLADPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQ 294
           S     D + I     +YY   +++K     ++ +FL     P +  E   +L    T  
Sbjct: 266 SGEITTDNIEIQRIIRDYYQQLYANKMDNVEEMDKFLEKYDFPKLDQEEIENLNRPITSS 325

Query: 295 DFSAALNQLPNHKMPSPDGLTIEFYKK 375
           +    +  LP +K P PDG T EFY+K
Sbjct: 326 EIETVIKNLPANKSPGPDGFTAEFYQK 352


>pir||B34087 hypothetical protein (L1H 3' region) - human
          Length = 1280

 Score = 52.0 bits (123), Expect(2) = 3e-10
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +1

Query: 136 DPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAAL 312
           DP  I T    YY   +++K     ++ +FL+  + P ++ E   SL    T  +  A +
Sbjct: 408 DPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITGSEIEAII 467

Query: 313 NQLPNHKMPSPDGLTIEFYKK 375
           N LP  K P PDG T EFY++
Sbjct: 468 NSLPTKKSPGPDGFTAEFYQR 488



 Score = 38.9 bits (89), Expect(2) = 3e-10
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +2

Query: 440 SFNEGIITLIPKDG-DKTRITNWRPISLLNTSYKIFAKTIAIKLK 571
           SF E  I LIPK G D T+  N+RPISL+N   KI  K +A +++
Sbjct: 513 SFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANQIQ 557


>gb|AAB59368.1| ORF2 contains a reverse transcriptase domain [Homo sapiens]
          Length = 1275

 Score = 51.6 bits (122), Expect(2) = 3e-10
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +1

Query: 136 DPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAAL 312
           DP  I T    YY   +++K     ++  FL+  + P ++ E   SL    T  +  A +
Sbjct: 403 DPTEIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAII 462

Query: 313 NQLPNHKMPSPDGLTIEFYKKKM 381
           N LP  K P PDG T EFY++ M
Sbjct: 463 NSLPTKKSPGPDGFTAEFYQRYM 485



 Score = 39.3 bits (90), Expect(2) = 3e-10
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +2

Query: 440 SFNEGIITLIPKDG-DKTRITNWRPISLLNTSYKIFAKTIAIKLK 571
           SF E  I LIPK G D T+  N+RPISL+N   KI  K +A +++
Sbjct: 508 SFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQ 552


>pir||S65824 reverse transcriptase homolog - human transposon L1.1
           gi|339771|gb|AAA51622.1| ORF2 [Homo sapiens]
          Length = 1275

 Score = 51.6 bits (122), Expect(2) = 3e-10
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +1

Query: 136 DPLHIVTAFANYYTDSFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAAL 312
           DP  I T    YY   +++K     ++  FL+  + P ++ E   SL    T  +  A +
Sbjct: 403 DPTEIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAII 462

Query: 313 NQLPNHKMPSPDGLTIEFYKKKM 381
           N LP  K P PDG T EFY++ M
Sbjct: 463 NSLPTKKSPGPDGFTAEFYQRYM 485



 Score = 39.3 bits (90), Expect(2) = 3e-10
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +2

Query: 440 SFNEGIITLIPKDG-DKTRITNWRPISLLNTSYKIFAKTIAIKLK 571
           SF E  I LIPK G D T+  N+RPISL+N   KI  K +A +++
Sbjct: 508 SFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQ 552