BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00027399
         (561 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AGS54618.1| gag protein, partial [Small ruminant lentivirus]        57   4e-06
gb|AAP93852.1| gag polyprotein [Ovine lentivirus]                      56   7e-06
ref|XP_006674320.1| zinc knuckle transcription factor (CnjB), pu...    55   9e-06

>gb|AGS54618.1| gag protein, partial [Small ruminant lentivirus]
          Length = 164

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +2

Query: 71  ESSPKHDGKG--CDRCKTDTHETRNCKRNAICHYCKKRGHYQKDCKTK 208
           E +P++ G G  C  CK   H  R C++  ICH+C KRGH QKDCK K
Sbjct: 108 EKTPENRGPGQKCYNCKKPGHLARQCRQGIICHHCGKRGHMQKDCKKK 155


>gb|AAP93852.1| gag polyprotein [Ovine lentivirus]
          Length = 450

 Score = 55.8 bits (133), Expect = 7e-06
 Identities = 25/59 (42%), Positives = 32/59 (54%)
 Frame = +2

Query: 83  KHDGKGCDRCKTDTHETRNCKRNAICHYCKKRGHYQKDCKTKDGQYGGKDYEGCNDPRG 259
           K  G+ C  C  + H  R C++  ICH C KRGH +KDC+ K G  G    +G N  RG
Sbjct: 382 KGPGQKCYNCGKEGHLARQCRQGIICHNCGKRGHMRKDCRQKGGDKGQSQQQG-NSRRG 439


>ref|XP_006674320.1| zinc knuckle transcription factor (CnjB), putative [Cordyceps
           militaris CM01] gi|346318384|gb|EGX87987.1| zinc knuckle
           transcription factor (CnjB), putative [Cordyceps
           militaris CM01]
          Length = 487

 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 41/154 (26%), Positives = 60/154 (38%), Gaps = 23/154 (14%)
 Frame = +2

Query: 14  GHQLSCCKAE---DRVKSKQCEESS------PKHDGKGCDRCKTDTHETRNCKR-----N 151
           GH+ + C+ E   D V  ++CEE+       PK   +GC  C  + H   +C +     N
Sbjct: 333 GHRATDCEEEPNLDNVTCRKCEETGHFAKDCPKGGARGCRNCGQEGHFAADCDQPPNLDN 392

Query: 152 AICHYCKKRGHYQKDC---------KTKDGQYGGKDYEGCNDPRGDLGANDVLNQYGIGD 304
            +C  C+K GH+ +DC         K  + Q  G     C  P  D   ND    +  G+
Sbjct: 393 VVCRNCEKNGHFSRDCPEPKDWSKVKCSNCQEFGHTKVRCKQPPADQPDNDTGGGFD-GN 451

Query: 305 VEALSSRLGDFGRNADLGEFRKRRSEAFMSSLGD 406
               S   G +    D G       + F S  GD
Sbjct: 452 AGGDSGAGGGWNNGGDSGNGGDYGQQNFSSGGGD 485