BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00027261
         (458 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AGH20663.1| reverse transcriptase, partial [Turritis glabra]       102   4e-20
gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157...    99   6e-19
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi...    99   8e-19
gb|AGH20676.1| reverse transcriptase, partial [Olimarabidopsis c...    97   2e-18
gb|AEJ07927.1| Opie2 pol protein [Zea mays subsp. mexicana]            97   3e-18
gb|AEJ07899.1| Opie3 putative pol protein [Zea mays subsp. mexic...    97   3e-18
gb|ABF67947.1| Opie2 pol protein [Zea mays]                            97   3e-18
gb|AAP94592.1| retrotransposon Opie-2 [Zea mays]                       96   4e-18
gb|AAL66759.1|AF464738_10 putative pol protein [Zea mays]              96   4e-18
gb|AGH20665.1| reverse transcriptase, partial [Turritis glabra]        96   5e-18
gb|AAC49502.1| Pol [Zea mays]                                          96   5e-18
gb|AGH20664.1| reverse transcriptase, partial [Turritis glabra]        96   6e-18
gb|AFK88544.1| reverse transcriptase, partial [Arabidopsis halle...    96   6e-18
gb|AEJ07931.1| Opie3 pol protein [Zea mays subsp. mexicana]            96   6e-18
ref|NP_001059496.1| Os07g0434200 [Oryza sativa Japonica Group] g...    96   6e-18
gb|EEC81933.1| hypothetical protein OsI_25798 [Oryza sativa Indi...    95   8e-18
gb|ABF94034.1| retrotransposon protein, putative, unclassified [...    95   8e-18
gb|AGH20674.1| reverse transcriptase, partial [Crucihimalaya wal...    95   1e-17
gb|AAL75483.1|AF466202_9 putative pol protein [Zea mays]               95   1e-17
gb|ABA92210.1| retrotransposon protein, putative, unclassified [...    94   1e-17

>gb|AGH20663.1| reverse transcriptase, partial [Turritis glabra]
          Length = 315

 Score =  102 bits (255), Expect = 4e-20
 Identities = 55/150 (36%), Positives = 92/150 (61%), Gaps = 2/150 (1%)
 Frame = +3

Query: 6   EFLKLRKFQVSKAYDNLWFLKT*KAERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFE 185
           ++ K +KF +   Y+   ++KT  ++  +I   +VDD+I TG N    E+FK+++ K FE
Sbjct: 161 KYFKEKKF-IKCPYEYALYIKTQNSDI-LIACLYVDDLIFTGNNPSMFEEFKKEMPKEFE 218

Query: 186 ITDLGIDKYYLGIQIEKIKNGLKLHQECYAESLLKNFNIVDPPLRKIPID--LNFDFNKF 359
           +TD+G+  YYLGI++ + +NG+ + QECYA+ +LK FN+ D      P++  +    N+ 
Sbjct: 219 MTDIGLMSYYLGIEVNQERNGIFITQECYAKEILKKFNMDDSNPVSTPMECGIKLSKNEE 278

Query: 360 RKKVDAK*YQRQIGSLLYLINTRPDIYYIV 449
            ++VD   ++  +GSL YL  TR DI Y V
Sbjct: 279 GERVDPTLFKSLVGSLRYLTCTRSDILYAV 308


>gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157|gb|ACN78980.1|
            copia-type polyprotein [Glycine max]
          Length = 1042

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 49/132 (37%), Positives = 81/132 (61%), Gaps = 2/132 (1%)
 Frame = +3

Query: 60   FLKT*KAERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFEITDLGIDKYYLGIQIEKI 239
            ++KT      + +  +VDD+I TG N    E FK  + + F++TD+G+  YYLG+++++ 
Sbjct: 707  YVKTFNNGDVLFICLYVDDLIFTGNNPNLFEDFKESMSREFDMTDMGLMSYYLGMEVKQT 766

Query: 240  KNGLKLHQECYAESLLKNFNIVDPPLRKIPIDLNFDFNKF--RKKVDAK*YQRQIGSLLY 413
            +NG+ + QE Y + +LK FN++D      P++     +KF   +KVD+  ++  +GSL Y
Sbjct: 767  QNGIFVSQERYTKEVLKKFNMLDCNPVNTPMEGGLKLSKFDEGEKVDSTIFKSLVGSLRY 826

Query: 414  LINTRPDIYYIV 449
            L NTRPDI Y V
Sbjct: 827  LTNTRPDILYAV 838


>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 822

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 46/124 (37%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
 Frame = +3

Query: 90   VILAFHVDDIIITGPNKEAIEQFKRDLEKAFEITDLGIDKYYLGIQIEKIKNGLKLHQEC 269
            +++  +VDD+I+TG ++E +E+FK  ++  FE++DLG+  Y+LG++I +   G+ L QEC
Sbjct: 652  LVVCIYVDDLIVTGDDEEMVEEFKTAMKNEFEMSDLGLLNYFLGMEIVQSLEGIFLSQEC 711

Query: 270  YAESLLKNFNIVDPPLRKIP-IDLNFDFNKFRKKVDAK*YQRQIGSLLYLINTRPDIYYI 446
            YA  LLK FN+ D  +   P +    D  +     D+K Y+  +G LLYL +TRP++ + 
Sbjct: 712  YARKLLKKFNMEDSKIMSTPLLPQRKDQEEDESLADSKVYRSLVGGLLYLTSTRPNLMFF 771

Query: 447  VCYI 458
              Y+
Sbjct: 772  ASYL 775


>gb|AGH20676.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
          Length = 315

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 52/137 (37%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
 Frame = +3

Query: 45  YDNLWFLKT*KAERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFEITDLGIDKYYLGI 224
           Y++  ++K  K +  +I   +VDD+I TG N    E+FK+++ K FE+TD+G+  YYLGI
Sbjct: 173 YEHALYIKIQKDDI-LIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMYYYLGI 231

Query: 225 QIEKIKNGLKLHQECYAESLLKNFNIVDPPLRKIPID--LNFDFNKFRKKVDAK*YQRQI 398
           ++++  NG+ + QE YA+ +LK F + D      P++  + F  N+  ++VD   ++  +
Sbjct: 232 EVKQEDNGIFITQEGYAKEVLKKFKLDDSNPVSTPMECGIKFSKNEEGERVDPTLFKNLV 291

Query: 399 GSLLYLINTRPDIYYIV 449
           GSL YL  TRPDI Y V
Sbjct: 292 GSLRYLTCTRPDILYAV 308


>gb|AEJ07927.1| Opie2 pol protein [Zea mays subsp. mexicana]
          Length = 1048

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 59/151 (39%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
 Frame = +3

Query: 6    EFLKLRKFQVSKAYDNLWFLKT*KAERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFE 185
            +FL +  F+V KA D   F KT   +   +   +VDDII    N+++ E+F R + + FE
Sbjct: 701  DFLIVNAFKVGKA-DPTLFTKTCDGDL-FVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFE 758

Query: 186  ITDLGIDKYYLGIQIEKIKNGLKLHQECYAESLLKNFNIVDPPLRKIPI--DLNFDFNKF 359
            ++ +G   Y+LG Q++++K+G  + Q  Y + LLK F + D    K P+  D + D NK 
Sbjct: 759  MSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKG 818

Query: 360  RKKVDAK*YQRQIGSLLYLINTRPDIYYIVC 452
             K VD K Y+  IGSLLYL  +RPDI   VC
Sbjct: 819  GKSVDQKAYRSMIGSLLYLCASRPDIMLSVC 849


>gb|AEJ07899.1| Opie3 putative pol protein [Zea mays subsp. mexicana]
          Length = 1048

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 59/151 (39%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
 Frame = +3

Query: 6    EFLKLRKFQVSKAYDNLWFLKT*KAERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFE 185
            +FL +  F+V KA D   F KT   +   +   +VDDII    N+++ E+F R + + FE
Sbjct: 701  DFLIVNAFKVGKA-DPTLFTKTCDGDL-FVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFE 758

Query: 186  ITDLGIDKYYLGIQIEKIKNGLKLHQECYAESLLKNFNIVDPPLRKIPI--DLNFDFNKF 359
            ++ +G   Y+LG Q++++K+G  + Q  Y + LLK F + D    K P+  D + D NK 
Sbjct: 759  MSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKG 818

Query: 360  RKKVDAK*YQRQIGSLLYLINTRPDIYYIVC 452
             K VD K Y+  IGSLLYL  +RPDI   VC
Sbjct: 819  GKSVDQKAYRSMIGSLLYLCASRPDIMLSVC 849


>gb|ABF67947.1| Opie2 pol protein [Zea mays]
          Length = 1048

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 59/151 (39%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
 Frame = +3

Query: 6    EFLKLRKFQVSKAYDNLWFLKT*KAERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFE 185
            +FL +  F+V KA D   F KT   +   +   +VDDII    N+++ E+F R + + FE
Sbjct: 701  DFLIVNAFKVGKA-DPTLFTKTCDGDL-FVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFE 758

Query: 186  ITDLGIDKYYLGIQIEKIKNGLKLHQECYAESLLKNFNIVDPPLRKIPI--DLNFDFNKF 359
            ++ +G   Y+LG Q++++K+G  + Q  Y + LLK F + D    K P+  D + D NK 
Sbjct: 759  MSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKG 818

Query: 360  RKKVDAK*YQRQIGSLLYLINTRPDIYYIVC 452
             K VD K Y+  IGSLLYL  +RPDI   VC
Sbjct: 819  GKSVDQKAYRSMIGSLLYLCASRPDIMLSVC 849


>gb|AAP94592.1| retrotransposon Opie-2 [Zea mays]
          Length = 1512

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 61/151 (40%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
 Frame = +3

Query: 6    EFLKLRKFQVSKAYDNLWFLKT*KAERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFE 185
            +FL    F+V KA D   F KT   +  V   F VDDII    N+++ E+F R + + FE
Sbjct: 1165 DFLIANAFKVGKA-DPTLFTKTCNGDLFVCQIF-VDDIIFGSTNQKSCEEFSRVMTQKFE 1222

Query: 186  ITDLGIDKYYLGIQIEKIKNGLKLHQECYAESLLKNFNIVDPPLRKIPI--DLNFDFNKF 359
            ++ +G   Y+LG Q++++K+G  + Q  Y + LLK F + D    K P+  D + D NK 
Sbjct: 1223 MSMMGKLNYFLGFQVKQLKDGTFISQMKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKG 1282

Query: 360  RKKVDAK*YQRQIGSLLYLINTRPDIYYIVC 452
             K VD K Y+  IGSLLYL  +RPDI   VC
Sbjct: 1283 GKSVDQKAYRSMIGSLLYLCASRPDIMLSVC 1313


>gb|AAL66759.1|AF464738_10 putative pol protein [Zea mays]
          Length = 1657

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 59/151 (39%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
 Frame = +3

Query: 6    EFLKLRKFQVSKAYDNLWFLKT*KAERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFE 185
            +FL    F+V KA D   F KT   +   +   +VDDII    N+++ E+F R + + FE
Sbjct: 1310 DFLLANAFKVGKA-DPTLFTKTCDGDL-FVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFE 1367

Query: 186  ITDLGIDKYYLGIQIEKIKNGLKLHQECYAESLLKNFNIVDPPLRKIPI--DLNFDFNKF 359
            ++ +G   Y+LG Q++++K+G  + Q  Y + LLK F + D    K P+  D + D NK 
Sbjct: 1368 MSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKG 1427

Query: 360  RKKVDAK*YQRQIGSLLYLINTRPDIYYIVC 452
             K VD K Y+  IGSLLYL  +RPDI   VC
Sbjct: 1428 GKSVDQKAYRSMIGSLLYLCASRPDIMLSVC 1458


>gb|AGH20665.1| reverse transcriptase, partial [Turritis glabra]
          Length = 315

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 48/122 (39%), Positives = 76/122 (62%), Gaps = 2/122 (1%)
 Frame = +3

Query: 90  VILAFHVDDIIITGPNKEAIEQFKRDLEKAFEITDLGIDKYYLGIQIEKIKNGLKLHQEC 269
           +I   +VDD+I TG N    E+FK+++ K FE+TD+ +  YYLGI++++ +NG+ + QEC
Sbjct: 187 LIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIRLMSYYLGIEVKQEENGIFITQEC 246

Query: 270 YAESLLKNFNIVDPPLRKIPID--LNFDFNKFRKKVDAK*YQRQIGSLLYLINTRPDIYY 443
           YA+ +LK F + D      P++  +    N+  ++VD    +  +GSL YL  TRPDI Y
Sbjct: 247 YAKEILKKFKMDDSNPVSTPMECGIKLSKNEEGERVDLTLLKNLVGSLRYLTCTRPDILY 306

Query: 444 IV 449
            V
Sbjct: 307 AV 308


>gb|AAC49502.1| Pol [Zea mays]
          Length = 1068

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 59/151 (39%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
 Frame = +3

Query: 6    EFLKLRKFQVSKAYDNLWFLKT*KAERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFE 185
            +FL    F+V KA D   F KT   +   +   +VDDII    N+++ E+F R + + FE
Sbjct: 721  DFLIANAFKVGKA-DPTLFTKTCDGDL-FVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFE 778

Query: 186  ITDLGIDKYYLGIQIEKIKNGLKLHQECYAESLLKNFNIVDPPLRKIPI--DLNFDFNKF 359
            ++ +G   Y+LG Q++++K+G  + Q  Y + LLK F + D    K P+  D + D NK 
Sbjct: 779  MSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKG 838

Query: 360  RKKVDAK*YQRQIGSLLYLINTRPDIYYIVC 452
             K VD K Y+  IGSLLYL  +RPDI   VC
Sbjct: 839  GKSVDQKAYRSMIGSLLYLCASRPDIMLSVC 869


>gb|AGH20664.1| reverse transcriptase, partial [Turritis glabra]
          Length = 315

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
 Frame = +3

Query: 6   EFLKLRKFQVSKAYDNLWFLKT*KAERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFE 185
           ++ K +KF +   Y++  ++K    +  +I   +V+D+I TG N    E+FK+++ K FE
Sbjct: 161 KYFKEKKF-IKCPYEHALYIKIHNGDI-LIACLYVNDLIFTGNNLSMFEEFKKEITKDFE 218

Query: 186 ITDLGIDKYYLGIQIEKIKNGLKLHQECYAESLLKNFNIVDPPLRKIPI--DLNFDFNKF 359
           ITD+G   YYLGI++ + +N + + QECYA+ +LK F + D  L   P+   +    N+ 
Sbjct: 219 ITDIGFMSYYLGIEVRQEENRIFITQECYAKEILKKFKMDDSNLVSTPMKCGIKLSKNEE 278

Query: 360 RKKVDAK*YQRQIGSLLYLINTRPDIYYIV 449
            ++VD   ++  +G L YL  TRPDI Y V
Sbjct: 279 GERVDLTLFKSLVGILRYLTCTRPDILYAV 308


>gb|AFK88544.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 52/137 (37%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
 Frame = +3

Query: 45  YDNLWFLKT*KAERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFEITDLGIDKYYLGI 224
           Y++  ++K  K +  +I   +VDD+I TG N    E+FK+++ K FE+TD+G+  YYLGI
Sbjct: 173 YEHALYIKIQKDDI-LIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGI 231

Query: 225 QIEKIKNGLKLHQECYAESLLKNFNIVD--PPLRKIPIDLNFDFNKFRKKVDAK*YQRQI 398
           ++++  NG+ + QE YA+ +LK F + D  P    I   +    N+  + VD   ++  +
Sbjct: 232 EVKQEDNGIFITQEGYAKEVLKKFKVDDSNPVTTPIECGIKLSKNEEGEGVDPTTFKSLV 291

Query: 399 GSLLYLINTRPDIYYIV 449
           GSL YL  TRPDI Y V
Sbjct: 292 GSLRYLTCTRPDILYAV 308


>gb|AEJ07931.1| Opie3 pol protein [Zea mays subsp. mexicana]
          Length = 1048

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 58/151 (38%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
 Frame = +3

Query: 6    EFLKLRKFQVSKAYDNLWFLKT*KAERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFE 185
            +FL    F+V KA D   F KT   +   +   +VDDII    N+++ E+F R + + FE
Sbjct: 701  DFLIANAFKVGKA-DPTLFTKTCDGDL-FVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFE 758

Query: 186  ITDLGIDKYYLGIQIEKIKNGLKLHQECYAESLLKNFNIVDPPLRKIPI--DLNFDFNKF 359
            ++ +G   Y+LG Q++++K+G  + Q  Y + LLK F + D    K P+  D + D NK 
Sbjct: 759  MSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKG 818

Query: 360  RKKVDAK*YQRQIGSLLYLINTRPDIYYIVC 452
             K +D K Y+  IGSLLYL  +RPDI   VC
Sbjct: 819  GKSIDQKAYRSMIGSLLYLCASRPDIMLSVC 849


>ref|NP_001059496.1| Os07g0434200 [Oryza sativa Japonica Group]
            gi|113611032|dbj|BAF21410.1| Os07g0434200, partial [Oryza
            sativa Japonica Group]
          Length = 1212

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 45/128 (35%), Positives = 82/128 (64%), Gaps = 2/128 (1%)
 Frame = +3

Query: 81   ERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFEITDLGIDKYYLGIQIEKIKNGLKLH 260
            E+ +++  +VDD+IITG N   ++QFK +++  F+++DLG+ +YYLG+++ + ++G+ ++
Sbjct: 885  EQRLVVGVYVDDLIITGGNPGELKQFKEEMKGTFQMSDLGLLQYYLGLEVNQTEDGITVN 944

Query: 261  QECYAESLLKNFNIVDPPLRKIPIDLNFDFNKFRK--KVDAK*YQRQIGSLLYLINTRPD 434
            Q  YAE +L+   +V       P++     +K      VDA  Y+  +GSL YL+N+RPD
Sbjct: 945  QRAYAEKILQTAGMVASNPSLTPMETRLKLSKMSNAPSVDATDYRWIVGSLRYLVNSRPD 1004

Query: 435  IYYIVCYI 458
            + Y V Y+
Sbjct: 1005 LAYSVGYV 1012


>gb|EEC81933.1| hypothetical protein OsI_25798 [Oryza sativa Indica Group]
          Length = 1104

 Score = 95.1 bits (235), Expect = 8e-18
 Identities = 44/128 (34%), Positives = 82/128 (64%), Gaps = 2/128 (1%)
 Frame = +3

Query: 81   ERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFEITDLGIDKYYLGIQIEKIKNGLKLH 260
            E+ +++  +VDD+IITG N   ++QFK +++  F+++DLG+ +YYLG+++ + ++G+ ++
Sbjct: 777  EQRLVVGVYVDDLIITGGNPGELKQFKEEMKGTFQMSDLGLLQYYLGLEVNQTEDGITVN 836

Query: 261  QECYAESLLKNFNIVDPPLRKIPIDLNFDFNKFRK--KVDAK*YQRQIGSLLYLINTRPD 434
            Q  YAE +L+   +V       P++     +K      +DA  Y+  +GSL YL+N+RPD
Sbjct: 837  QRAYAEKILQTAGMVASNPSLTPMETRLKLSKMSNAPSIDATDYRWIVGSLRYLVNSRPD 896

Query: 435  IYYIVCYI 458
            + Y V Y+
Sbjct: 897  LAYSVGYV 904


>gb|ABF94034.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1409

 Score = 95.1 bits (235), Expect = 8e-18
 Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
 Frame = +3

Query: 87   GVILAFHVDDIIITGPNKEAIEQFKRDLEKAFEITDLGIDKYYLGIQIEKIKNGLKLHQE 266
            G+I+  +VDD+I+TG N   ++ FK  +   FE++DLG+  YYLGI++++ ++   L Q 
Sbjct: 1084 GIIVGVYVDDLIVTGENPSELKVFKEQMMGEFEMSDLGLLTYYLGIEVDQDESATTLKQT 1143

Query: 267  CYAESLLKNFNIVDPPLRKIPIDLNFDFNKFRK--KVDAK*YQRQIGSLLYLINTRPDIY 440
             YA+ LL  F +++     IPID     +K  +   VDA  Y+R IGSL YL++TRPD+ 
Sbjct: 1144 AYAKKLLSQFGMMECNSVSIPIDPRSQLSKDPEGHPVDATEYRRIIGSLRYLLHTRPDLS 1203

Query: 441  YIV 449
            Y V
Sbjct: 1204 YAV 1206


>gb|AGH20674.1| reverse transcriptase, partial [Crucihimalaya wallichii]
          Length = 315

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 54/150 (36%), Positives = 87/150 (58%), Gaps = 2/150 (1%)
 Frame = +3

Query: 6   EFLKLRKFQVSKAYDNLWFLKT*KAERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFE 185
           ++ K +KF +   Y++  ++K    +  +I   +VDD+I TG N    E+FK ++ K FE
Sbjct: 161 KYFKEKKF-IKCPYEHALYIKIQNNDL-LIACLYVDDLIFTGNNPNMFEEFKMEMTKEFE 218

Query: 186 ITDLGIDKYYLGIQIEKIKNGLKLHQECYAESLLKNFNIVDPPLRKIPIDLNFDFNKFR- 362
           +TD+G   YYLGI++++  NG+ + QE YA+ +LK F + D  +   PI+     +K   
Sbjct: 219 MTDIGFMSYYLGIKVKQEDNGIFITQEGYAKEVLKKFKMDDSNVVSTPIECGAKLSKQEE 278

Query: 363 -KKVDAK*YQRQIGSLLYLINTRPDIYYIV 449
            + VD   ++  +GSL YL  TRPDI Y V
Sbjct: 279 GESVDPTLFKSLVGSLRYLTCTRPDILYAV 308


>gb|AAL75483.1|AF466202_9 putative pol protein [Zea mays]
          Length = 1553

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
 Frame = +3

Query: 9    FLKLRKFQVSKAYDNLWFLKT*KAERGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFEI 188
            FL    F+V KA D   F KT   +   +   +VDDII    N+++ E+F R + + FE+
Sbjct: 1207 FLIANAFKVGKA-DPTLFTKTCNGDL-FVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEM 1264

Query: 189  TDLGIDKYYLGIQIEKIKNGLKLHQECYAESLLKNFNIVDPPLRKIPI--DLNFDFNKFR 362
              +G   Y+LG Q++++K+G  + Q  Y + L+K F + D    K P+  D + D NK  
Sbjct: 1265 PMMGELSYFLGFQVKQLKDGTFISQTKYTQDLIKRFGMKDAKPAKTPMGTDGHIDLNKGG 1324

Query: 363  KKVDAK*YQRQIGSLLYLINTRPDIYYIVC 452
            K VD K Y+  IGSLLYL  +RPDI   VC
Sbjct: 1325 KSVDQKAYRSMIGSLLYLCASRPDIMLSVC 1354


>gb|ABA92210.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 588

 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 46/127 (36%), Positives = 80/127 (62%), Gaps = 2/127 (1%)
 Frame = +3

Query: 84  RGVILAFHVDDIIITGPNKEAIEQFKRDLEKAFEITDLGIDKYYLGIQIEKIKNGLKLHQ 263
           R +++  +VDD+IITG     +EQFK +++  F+++DLG+ KYY+G+++ + K+G+ + Q
Sbjct: 342 RRLVVGIYVDDLIITGGESTELEQFKEEMKGTFQMSDLGLLKYYVGLEVNQTKDGITVCQ 401

Query: 264 ECYAESLLK--NFNIVDPPLRKIPIDLNFDFNKFRKKVDAK*YQRQIGSLLYLINTRPDI 437
             YAE +L+    +  +P L  +   L    +     VDA  Y+R +GSL YL+N+RPD+
Sbjct: 402 RAYAEKILEMAGMSSSNPSLTLMESRLKLSKSSAAPAVDATDYRRIMGSLRYLVNSRPDL 461

Query: 438 YYIVCYI 458
            + V Y+
Sbjct: 462 AFSVGYV 468