BLASTX nr result
ID: Ephedra27_contig00026616
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00026616
(1003 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group... 94 9e-35
gb|ABA99612.1| retrotransposon protein, putative, unclassified [... 94 9e-35
gb|ABR16288.1| unknown [Picea sitchensis] 91 5e-34
emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera] 97 1e-33
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana] 95 1e-33
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza... 89 2e-33
gb|ABA95820.1| retrotransposon protein, putative, unclassified [... 92 6e-33
emb|CAB75932.1| putative protein [Arabidopsis thaliana] 88 1e-32
gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group] 86 2e-32
gb|AGH20679.1| reverse transcriptase, partial [Raphanus sativus] 84 2e-31
gb|ABW74566.1| integrase [Boechera divaricarpa] 87 2e-31
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ... 94 3e-31
gb|AFP55578.1| copia-type polyprotein [Rosa rugosa] 84 4e-31
gb|AGH20675.1| reverse transcriptase, partial [Olimarabidopsis c... 82 5e-31
emb|CAN74029.1| hypothetical protein VITISV_013540 [Vitis vinifera] 81 5e-31
gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsi... 92 6e-31
gb|AGW47867.1| polyprotein [Phaseolus vulgaris] 84 1e-30
emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera] 83 2e-30
gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty... 95 2e-30
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi... 86 2e-30
>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711922|gb|ABF99717.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1335
Score = 94.0 bits (232), Expect(3) = 9e-35
Identities = 48/98 (48%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
ET+ P+AR++ +R I+ AA + QLDVK LNG L EE+Y +QP+GF G EN
Sbjct: 925 ETYAPVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENK 984
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYMHRNVY*RYISDP 373
V++LK+ LYGLKQA AWYS+ DKY + + + IS+P
Sbjct: 985 VFRLKKALYGLKQAPRAWYSQIDKYFIQKGFAKSISEP 1022
Score = 74.7 bits (182), Expect(3) = 9e-35
Identities = 39/115 (33%), Positives = 64/115 (55%)
Frame = -3
Query: 350 TKLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRVITLC 171
T ++++ +YVD +I GN ++++ K+ M M+DLG L Y+ G +++Q D I +
Sbjct: 1031 TDILIVSLYVDDLIYTGNSEKMMQDFKKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFIS 1090
Query: 170 QSMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
Q Y ++LK F D+ V+TP+ AD ++RS+VGSL YLT
Sbjct: 1091 QRKYAENILKKFKMDNCKSVTTPLLPNEKQKARDGADKADPTIYRSLVGSLLYLT 1145
Score = 26.6 bits (57), Expect(3) = 9e-35
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 770 WGYQLPRTNYNPDYIMHEYKGRLVVKCYVQE 678
W Y +T NPD + +YK RLV K + Q+
Sbjct: 891 WVY---KTKLNPDGSVQKYKARLVAKGFKQK 918
>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1198
Score = 94.0 bits (232), Expect(3) = 9e-35
Identities = 48/98 (48%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
ET+ P+AR++ +R I+ AA + QLDVK LNG L EE+Y +QP+GF G EN
Sbjct: 788 ETYAPVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENK 847
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYMHRNVY*RYISDP 373
V++LK+ LYGLKQA AWYS+ DKY + + + IS+P
Sbjct: 848 VFRLKKALYGLKQAPRAWYSQIDKYFIQKGFAKSISEP 885
Score = 74.7 bits (182), Expect(3) = 9e-35
Identities = 39/115 (33%), Positives = 64/115 (55%)
Frame = -3
Query: 350 TKLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRVITLC 171
T ++++ +YVD +I GN ++++ K+ M M+DLG L Y+ G +++Q D I +
Sbjct: 894 TDILIVSLYVDDLIYTGNSEKMMQDFKKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFIS 953
Query: 170 QSMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
Q Y ++LK F D+ V+TP+ AD ++RS+VGSL YLT
Sbjct: 954 QRKYAKNILKKFKMDNCKSVTTPLLPNEKQKARYGADKADPTIYRSLVGSLLYLT 1008
Score = 26.6 bits (57), Expect(3) = 9e-35
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 770 WGYQLPRTNYNPDYIMHEYKGRLVVKCYVQE 678
W Y +T NPD + +YK RLV K + Q+
Sbjct: 754 WVY---KTKLNPDGSVQKYKARLVAKGFKQK 781
>gb|ABR16288.1| unknown [Picea sitchensis]
Length = 363
Score = 90.9 bits (224), Expect(3) = 5e-34
Identities = 49/98 (50%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
ETF P+AR+ +R +L AA V Q+DVK LNG L EEVY QQP + G+E+
Sbjct: 64 ETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDK 123
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYMHRNVY*RYISDP 373
VY+LK+ L GLKQA AWYS+ D YM +N + R S+P
Sbjct: 124 VYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEP 161
Score = 79.7 bits (195), Expect(3) = 5e-34
Identities = 44/118 (37%), Positives = 66/118 (55%)
Frame = -3
Query: 359 NRSTKLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRVI 180
N +++++ +YVD +I GN + K AM++E MTDLG + Y+ G ++ QKD+ I
Sbjct: 168 NEQGQILIVCLYVDDLIYTGN--LTIDMFKSAMKKEFEMTDLGLMNYFLGIEVTQKDKGI 225
Query: 179 TLCQSMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
+CQS Y D+LK F + +PVSTP+ D + R +VGSL YLT
Sbjct: 226 FICQSKYARDVLKRFRMINCSPVSTPVGVGTKLSREQNEMDFDSTIFRKLVGSLMYLT 283
Score = 22.3 bits (46), Expect(3) = 5e-34
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 770 WGYQLPRTNYNPDYIMHEYKGRLVVKCYVQE 678
W Y +T Y + + ++K RLV K + QE
Sbjct: 30 WVY---KTKYKANGELDKHKARLVAKGFAQE 57
>emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]
Length = 1424
Score = 97.4 bits (241), Expect(2) = 1e-33
Identities = 50/98 (51%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
ETF P+AR+ +R I+ AA G ++ QLD+K LNG L E+Y +QP+GFV G+EN
Sbjct: 988 ETFAPVARLDTIRTIIAVAAQKGWLLYQLDIKSAFLNGKLEXEIYVEQPQGFVVDGEENK 1047
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYMHRNVY*RYISDP 373
VYKLK+ LYGLKQA AWY++ D Y N + R S+P
Sbjct: 1048 VYKLKKALYGLKQAPRAWYTQIDSYFIENGFIRSKSEP 1085
Score = 73.9 bits (180), Expect(2) = 1e-33
Identities = 37/116 (31%), Positives = 67/116 (57%)
Frame = -3
Query: 353 STKLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRVITL 174
+++++++ +YVD +I GND ++V+ + M ++ M+D+G L Y+ G ++ Q++ + +
Sbjct: 1094 NSQILIVALYVDDLIFTGNDEKMVEKFRNEMMKKYEMSDMGLLHYFLGIEVYQEEDGVFI 1153
Query: 173 CQSMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
CQ YV +LK F N VSTP+ + D+ RS+VG+L YLT
Sbjct: 1154 CQKRYVEHILKKFGMAGCNXVSTPLVVNEKLRKEDGGKMVDETHFRSLVGNLLYLT 1209
>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
Length = 1643
Score = 95.1 bits (235), Expect(2) = 1e-33
Identities = 46/86 (53%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
ETF P+AR++ +R +LG A MG + Q+DVKC LNG++ EEVY +QPKGF +L +
Sbjct: 1216 ETFAPVARLECIRFLLGTACGMGFKLHQMDVKCAFLNGIIEEEVYVEQPKGFENLEFPEY 1275
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYM 409
VYKLK+ LYGLKQA AWY R ++
Sbjct: 1276 VYKLKKALYGLKQAPRAWYERLTTFL 1301
Score = 75.9 bits (185), Expect(2) = 1e-33
Identities = 39/113 (34%), Positives = 61/113 (53%)
Frame = -3
Query: 344 LVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRVITLCQS 165
++++ +YVD I+ G ++VK + M E M+ +G+L Y+ G QINQ D IT+ QS
Sbjct: 1324 IIIIQIYVDDIVFGGTSDKLVKTFVKTMTTEFRMSMVGELKYFLGLQINQTDEGITISQS 1383
Query: 164 MYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
Y +L+K F + P TP+ D+ L+R ++GSL YLT
Sbjct: 1384 TYAQNLVKRFGMCSSKPAPTPMSTTTKLFKDEKGVKVDEKLYRGMIGSLLYLT 1436
>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
gi|31429795|gb|AAP51797.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1350
Score = 89.0 bits (219), Expect(3) = 2e-33
Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
ET+ P+AR++ +R I+ AA + QLDVK LNG L EE+Y +QP+GF G EN
Sbjct: 848 ETYAPVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENK 907
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYMHRNVY*RYIS 379
V++LK+ LYGLKQA AWYS+ D+Y + + + IS
Sbjct: 908 VFRLKKALYGLKQAPRAWYSQIDQYFIQKGFAKSIS 943
Score = 74.3 bits (181), Expect(3) = 2e-33
Identities = 39/116 (33%), Positives = 64/116 (55%)
Frame = -3
Query: 353 STKLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRVITL 174
ST ++++ +YVD +I N ++++ K+ M M+DLG L Y+ G +++Q D I +
Sbjct: 943 STDILIVSLYVDDLIYTANSEKMMQDFKKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFI 1002
Query: 173 CQSMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
Q Y ++LK F D+ V+TP+ AD ++RS+VGSL YLT
Sbjct: 1003 SQRKYAENILKKFKMDNYKSVTTPLLPNEKQKARDGADKADPTIYRSLVGSLLYLT 1058
Score = 27.3 bits (59), Expect(3) = 2e-33
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 788 KITSC*WGYQLPRTNYNPDYIMHEYKGRLVVKCYVQE 678
K+ W Y +T NPD + +YK RLV K + Q+
Sbjct: 808 KVIGVKWVY---KTKLNPDGSVQKYKARLVAKGFKQK 841
>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1142
Score = 92.4 bits (228), Expect(3) = 6e-33
Identities = 47/98 (47%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
ET+ P+AR++ +R I+ AA + QLDVK LNG L EE+Y +QP+GF G EN
Sbjct: 715 ETYAPVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENK 774
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYMHRNVY*RYISDP 373
V++LK+ LYGLKQA WYS+ DKY + + + IS+P
Sbjct: 775 VFRLKKALYGLKQAPRVWYSQIDKYFIQKGFAKSISEP 812
Score = 73.9 bits (180), Expect(3) = 6e-33
Identities = 38/115 (33%), Positives = 63/115 (54%)
Frame = -3
Query: 350 TKLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRVITLC 171
T ++++ +YVD +I GN ++++ K+ M M+DLG L Y+ G +++Q D I +
Sbjct: 821 TDILIVSLYVDDLIYTGNSEKMMQDFKKDMMHTYEMSDLGLLYYFLGMEVHQSDEGIFIS 880
Query: 170 QSMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
Q Y ++LK F D+ V+TP+ D ++RS+VGSL YLT
Sbjct: 881 QRKYAENILKKFKMDNCKSVTTPLLPNEKQKARDGADKVDPTIYRSLVGSLLYLT 935
Score = 22.7 bits (47), Expect(3) = 6e-33
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 770 WGYQLPRTNYNPDYIMHEYKGRLVVKCYVQE 678
W Y +T N D + +YK RLV K + Q+
Sbjct: 681 WVY---KTKLNLDGSVQKYKARLVAKGFKQK 708
>emb|CAB75932.1| putative protein [Arabidopsis thaliana]
Length = 1339
Score = 88.2 bits (217), Expect(3) = 1e-32
Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Frame = -2
Query: 666 TETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKEN 490
TE F P+AR+ VR IL ++ + QLDVK L+G L EEVY +QP+GF+ G+E
Sbjct: 905 TEVFAPVARLDTVRTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPEGFIREGEEE 964
Query: 489 WVYKLKETLYGLKQAALAWYSRFDKYMHRNVY*RYISD 376
VYKL++ LYGLKQA AWYSR + Y + + R S+
Sbjct: 965 KVYKLRKALYGLKQAPRAWYSRIEAYFLKEEFERCPSE 1002
Score = 75.5 bits (184), Expect(3) = 1e-32
Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Frame = -3
Query: 374 HTL*-ENRSTKLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQIN 198
HTL + R ++++ +YVD +I G+D+ + K++M E M+DLGK+ ++ G ++
Sbjct: 1003 HTLFTKTRVGNILIVSLYVDDLIFTGSDKAMCDEFKKSMMLEFEMSDLGKMKHFLGIEVK 1062
Query: 197 QKDRVITLCQSMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSL 18
Q D I +CQ Y ++L F D++N V PI + D+ + + +VGSL
Sbjct: 1063 QSDGGIFICQRRYAREVLARFGMDESNAVKNPIVPGTKLTKDENGEKVDETMFKQLVGSL 1122
Query: 17 TYLTL 3
YLT+
Sbjct: 1123 MYLTV 1127
Score = 24.6 bits (52), Expect(3) = 1e-32
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 770 WGYQLPRTNYNPDYIMHEYKGRLVVKCYVQ 681
W Y +T N D + +YK RLV K Y Q
Sbjct: 872 WVY---KTKLNEDGEVDKYKARLVAKGYAQ 898
>gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1136
Score = 85.5 bits (210), Expect(3) = 2e-32
Identities = 45/98 (45%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
ET+ +AR++ + I+ AA + QLDVK LNG L EE+Y +QP+ F G EN
Sbjct: 709 ETYAHVARLETIHTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPERFSVQGGENK 768
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYMHRNVY*RYISDP 373
V++LK+ LYGLKQA AWYS+ DKY + + + IS+P
Sbjct: 769 VFRLKKALYGLKQAPRAWYSQIDKYFIQKGFAKSISEP 806
Score = 75.1 bits (183), Expect(3) = 2e-32
Identities = 39/115 (33%), Positives = 64/115 (55%)
Frame = -3
Query: 350 TKLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRVITLC 171
T ++++ +YVD +I GN ++++ K+ M M+DLG L Y+ G +++Q D I +
Sbjct: 815 TDILIVSLYVDDLIYTGNSEKLMQDFKKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFIS 874
Query: 170 QSMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
Q Y ++LK F D+ V+TP+ AD ++RS+VGSL YLT
Sbjct: 875 QRKYAENILKKFKMDNCKSVTTPLLPNEKQKARDGADKADPTIYRSLVGSLLYLT 929
Score = 26.6 bits (57), Expect(3) = 2e-32
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 770 WGYQLPRTNYNPDYIMHEYKGRLVVKCYVQE 678
W Y +T NPD + +YK RLV K + Q+
Sbjct: 675 WVY---KTKLNPDGSVQKYKARLVAKGFKQK 702
>gb|AGH20679.1| reverse transcriptase, partial [Raphanus sativus]
Length = 315
Score = 84.3 bits (207), Expect(2) = 2e-31
Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
E F P+AR++ VR I+ AA + Q+DVK LNG L EEVY +QP+G++ G+E+
Sbjct: 78 EVFAPVARLETVRLIISLAAQKSWRIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDK 137
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYMH 406
V +LK+ LYGLKQA AW +R DKY +
Sbjct: 138 VLRLKKALYGLKQAPRAWNTRIDKYFN 164
Score = 79.3 bits (194), Expect(2) = 2e-31
Identities = 40/119 (33%), Positives = 67/119 (56%)
Frame = -3
Query: 362 ENRSTKLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRV 183
+ ++ +++ +YVD +I GN+ + + K+ M +E MTD+G + YY G ++ Q++
Sbjct: 180 KTQNNDILIACLYVDDLIFTGNNPIMFEDFKKEMTKEFEMTDIGLMSYYLGIEVKQEENG 239
Query: 182 ITLCQSMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
I + Q Y ++LK F DD+NPV TP+ + D L +S+VGSL YLT
Sbjct: 240 IFITQEGYAKEVLKKFKMDDSNPVCTPMECGVKLSKEEEGESVDPTLFKSLVGSLRYLT 298
>gb|ABW74566.1| integrase [Boechera divaricarpa]
Length = 1165
Score = 86.7 bits (213), Expect(3) = 2e-31
Identities = 45/98 (45%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
+TF P+AR +R +L A+M + Q DVK LNG L EEVY QP+GF+ G+E +
Sbjct: 729 KTFSPVARFDTLRTLLALGAYMHWPIYQFDVKSAFLNGELREEVYVDQPEGFIVEGREGF 788
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYMHRNVY*RYISDP 373
VY+L + LYGLKQA AWY++ D Y + R S+P
Sbjct: 789 VYRLYKALYGLKQAPRAWYNKIDSYFAETGFERSKSEP 826
Score = 68.2 bits (165), Expect(3) = 2e-31
Identities = 39/113 (34%), Positives = 59/113 (52%)
Frame = -3
Query: 344 LVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRVITLCQS 165
++++ +YVD +I G+ +V K +M E+ MTDLG L ++ G ++ Q + + + Q
Sbjct: 838 ILVVCLYVDDMIYMGSSASLVSEFKASMMEKFEMTDLGLLYFFLGLEVKQVEDGVFVSQH 897
Query: 164 MYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
Y DLLK FD N V TP+ + AD RS+VG L YLT
Sbjct: 898 KYACDLLKRFDMAGCNAVETPMNVNEKLLAGDGTEKADATKFRSLVGGLIYLT 950
Score = 28.9 bits (63), Expect(3) = 2e-31
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 752 RTNYNPDYIMHEYKGRLVVKCYVQE 678
+T Y D + +YK RLVVK Y QE
Sbjct: 698 KTKYQADDNIQKYKARLVVKGYAQE 722
>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1333
Score = 94.4 bits (233), Expect(3) = 3e-31
Identities = 50/98 (51%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
ETF P+AR + VR +L AA + L V Q DVK LNG L EEVY QP+GF+ G EN
Sbjct: 898 ETFSPVARFETVRVVLALAAQLHLPVYQFDVKSAFLNGDLEEEVYVSQPQGFMITGNENK 957
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYMHRNVY*RYISDP 373
VYKL++ LYGLKQA AWYS+ D + + + R ++P
Sbjct: 958 VYKLRKALYGLKQAPRAWYSKIDSFFQGSGFRRSDNEP 995
Score = 61.6 bits (148), Expect(3) = 3e-31
Identities = 37/114 (32%), Positives = 56/114 (49%)
Frame = -3
Query: 347 KLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRVITLCQ 168
+ +L+ +YVD +I G+ + +V K M M+DLG L Y+ G ++ Q I + Q
Sbjct: 1006 EFLLVCLYVDDMIYIGSSKSLVNDFKSNMMRNFEMSDLGLLKYFLGLEVIQDKDGIFISQ 1065
Query: 167 SMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
Y DLLK F + +TP+ + A+ L RS+VG L YLT
Sbjct: 1066 KKYAEDLLKKFQMMNCEVATTPMNINEKLQRADGTEKANPKLFRSLVGGLNYLT 1119
Score = 27.3 bits (59), Expect(3) = 3e-31
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 752 RTNYNPDYIMHEYKGRLVVKCYVQE 678
RT YN D + ++K RLV K Y Q+
Sbjct: 867 RTKYNADGSIQKHKARLVAKGYSQQ 891
>gb|AFP55578.1| copia-type polyprotein [Rosa rugosa]
Length = 1187
Score = 84.0 bits (206), Expect(3) = 4e-31
Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Frame = -2
Query: 666 TETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKEN 490
TE + P+AR +R I+ AA + QLDVK L+G L+E+VY +QP+GF G+E
Sbjct: 754 TEVYAPVARWDTIRLIVALAAQKNWTIFQLDVKSAFLHGELNEDVYIEQPQGFEQKGEEE 813
Query: 489 WVYKLKETLYGLKQAALAWYSRFDKY 412
VYKLK+ LYGLKQA AWYSR + Y
Sbjct: 814 KVYKLKKALYGLKQAPRAWYSRIEGY 839
Score = 77.0 bits (188), Expect(3) = 4e-31
Identities = 41/114 (35%), Positives = 61/114 (53%)
Frame = -3
Query: 347 KLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRVITLCQ 168
K++++ +YVD I GND +++ K +M E MTDLG++ Y+ G +I Q I LCQ
Sbjct: 863 KMLIVSLYVDDQIFTGNDMSMIEKFKSSMMHEFEMTDLGEMKYFLGVEIRQSAEGIHLCQ 922
Query: 167 SMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
S Y ++++ F +NPV PI D L + +VGSL YLT
Sbjct: 923 SKYAREVIERFGMGKSNPVRNPIVPGSKLSMEAGGAVVDGTLFKQLVGSLMYLT 976
Score = 21.9 bits (45), Expect(3) = 4e-31
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 752 RTNYNPDYIMHEYKGRLVVKCYVQE 678
+T YN + + K RLV K Y Q+
Sbjct: 724 KTKYNEHGKVDKCKARLVAKGYAQQ 748
>gb|AGH20675.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
Length = 315
Score = 82.0 bits (201), Expect(2) = 5e-31
Identities = 43/85 (50%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
E F P+AR++ VR I+ AA + Q+DVK LNG L EEVY +QP+G+V G+E+
Sbjct: 78 EVFAPVARLETVRLIISLAAQNVWKIHQMDVKSAFLNGELDEEVYIEQPQGYVVKGEEDK 137
Query: 486 VYKLKETLYGLKQAALAWYSRFDKY 412
V +L++ LYGLKQA AW +R DKY
Sbjct: 138 VLRLRKALYGLKQAPRAWSTRIDKY 162
Score = 80.5 bits (197), Expect(2) = 5e-31
Identities = 40/119 (33%), Positives = 67/119 (56%)
Frame = -3
Query: 362 ENRSTKLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRV 183
+ ++ +++ +Y+D +I N+ + + K+ M +E MTD+G + YY G ++ Q+D
Sbjct: 180 KTQNNDILIACLYIDDLIFTNNNPNMFEDFKQEMTKEFEMTDIGLMSYYLGIEVKQEDNG 239
Query: 182 ITLCQSMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
I + Q Y ++LK F DD+NPVSTP+ + D L +S+VGSL YLT
Sbjct: 240 IFITQEGYAKEVLKKFKMDDSNPVSTPMECGSKLSKHEEGESIDPTLFKSLVGSLRYLT 298
>emb|CAN74029.1| hypothetical protein VITISV_013540 [Vitis vinifera]
Length = 894
Score = 80.9 bits (198), Expect(3) = 5e-31
Identities = 40/131 (30%), Positives = 72/131 (54%)
Frame = -3
Query: 398 YIKDTSQIHTL*ENRSTKLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLY 219
+++ S+ + +L+++ +YVD +++ GN ++++ K M + MTDLG + Y
Sbjct: 539 FVRSQSEATLYVKTNDVQLLIISLYVDDMLVTGNQPKLIQSFKDEMNKVFEMTDLGAMKY 598
Query: 218 YWGTQINQKDRVITLCQSMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLH 39
+ G ++ Q I +CQ Y D+LK F D PVSTP+ ++ ++ L+
Sbjct: 599 FLGMEVMQSCSRIFICQQKYAMDMLKKFKMQDYKPVSTPMTTNEKLSKDDGSEKINEGLY 658
Query: 38 RSVVGSLTYLT 6
RS++GSL YLT
Sbjct: 659 RSLIGSLLYLT 669
Score = 78.6 bits (192), Expect(3) = 5e-31
Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
ETF P+AR +R + AA + QLDVK LNG + +E+Y +QP G V+ KE++
Sbjct: 449 ETFAPVARYDTIRLLFVLAAQNSWHIHQLDVKSAFLNGFVDKEIYVEQPDGVVAPSKEDY 508
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYM 409
VY L++ LYGLKQA AWY DK++
Sbjct: 509 VYLLRKALYGLKQAPRAWYETMDKHL 534
Score = 23.1 bits (48), Expect(3) = 5e-31
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 752 RTNYNPDYIMHEYKGRLVVKCYVQE 678
+T N D + ++K +LVVK Y Q+
Sbjct: 418 KTKLNSDGSICKHKAKLVVKGYAQQ 442
>gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1347
Score = 92.4 bits (228), Expect(2) = 6e-31
Identities = 53/107 (49%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
ETF P++R +RA+L YAA M + Q+DVK LNG L EEVY QP GFV GKE
Sbjct: 916 ETFAPVSRYDTIRALLAYAAQMKWRLYQMDVKSAFLNGELEEEVYVTQPPGFVIEGKEEK 975
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYMHRNVY*RYISDPHSIGK*KYE 346
V +L + LYGLKQA AWY R D Y +N + R ++D K K E
Sbjct: 976 VLRLYKALYGLKQAPRAWYERIDSYFIQNGFARSMNDAALYSKKKGE 1022
Score = 69.7 bits (169), Expect(2) = 6e-31
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Frame = -3
Query: 362 ENRSTKLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRV 183
+ + ++++ +YVD +II GN+ ++ K+ M++E MTDLG L Y+ G ++NQ D
Sbjct: 1018 KKKGEDVLIVSLYVDDLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYFLGMEVNQDDSG 1077
Query: 182 ITLCQSMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQP--ADDHLHRSVVGSLTYL 9
I L Q Y + L+ F ++ VSTP+ + AD +R +VG L YL
Sbjct: 1078 IFLSQEKYANKLIDKFGMKESKSVSTPLTPQGKRKGVEGDDKEFADPTKYRRIVGGLLYL 1137
>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
Length = 1471
Score = 84.0 bits (206), Expect(2) = 1e-30
Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
E F P+ R++ +R ++ AA + Q+DVK LNGVL EEVY +QP G++ +G+E
Sbjct: 916 EVFAPVVRMETIRLLISQAAQFKWPIFQMDVKSAFLNGVLEEEVYIEQPPGYMKIGEEKK 975
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYMHRN 400
V KLK+ LYGLKQA AW +R D Y N
Sbjct: 976 VLKLKKALYGLKQAPRAWNTRIDTYFKEN 1004
Score = 77.0 bits (188), Expect(2) = 1e-30
Identities = 39/119 (32%), Positives = 65/119 (54%)
Frame = -3
Query: 362 ENRSTKLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRV 183
+N ++ + +YVD +I GN+ +++ K MR E MTDLG + ++ G ++ QK+
Sbjct: 1018 KNNGGNMIFVALYVDDLIFMGNNNDMIEEFKGTMRREFEMTDLGLMKFFLGLEVRQKETG 1077
Query: 182 ITLCQSMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
I + Q Y ++LK + ++ NPVS P+ + D +RS+VGSL YLT
Sbjct: 1078 IFVSQEKYAKEILKKYKMENCNPVSIPMEPGAKLSKFDGGERVDASRYRSLVGSLRYLT 1136
>emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]
Length = 1265
Score = 83.2 bits (204), Expect(3) = 2e-30
Identities = 43/86 (50%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Frame = -2
Query: 666 TETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKEN 490
TE F P+AR++ +R ++ AA + QLDVK L+G L+EEV+ +QP G+V G E
Sbjct: 860 TEVFAPVARMETIRLVVALAAQRKWTIYQLDVKSAFLHGELNEEVFVEQPCGYVQKGHEQ 919
Query: 489 WVYKLKETLYGLKQAALAWYSRFDKY 412
VYKLK+ LYGLKQA AWYS + Y
Sbjct: 920 KVYKLKKALYGLKQAPXAWYSXIEAY 945
Score = 73.2 bits (178), Expect(3) = 2e-30
Identities = 39/113 (34%), Positives = 61/113 (53%)
Frame = -3
Query: 347 KLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRVITLCQ 168
K++++ +YVD +I GND + KR+M++E MTDLGK+ Y+ G ++ Q+ I + Q
Sbjct: 969 KVLIVSLYVDDLIFTGNDELMFTDFKRSMKDEFDMTDLGKMRYFLGLEVLQRSDGIFISQ 1028
Query: 167 SMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYL 9
Y ++L+ F D +N V PI D ++ VVGSL YL
Sbjct: 1029 KKYALEVLQRFGMDKSNSVHNPIVPGFKLMKDEGGVKVDKTYYKQVVGSLMYL 1081
Score = 24.6 bits (52), Expect(3) = 2e-30
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 752 RTNYNPDYIMHEYKGRLVVKCYVQE 678
+T +N + + +YK RLV K Y Q+
Sbjct: 830 KTKFNENGEVDKYKARLVAKGYTQQ 854
>gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase
aspartic, catalytic [Medicago truncatula]
Length = 1715
Score = 94.7 bits (234), Expect(2) = 2e-30
Identities = 47/94 (50%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Frame = -2
Query: 666 TETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKEN 490
TETF P+AR++ +R +L YA + G+++ Q+DVK LNGV+ EEVY +QP GF L +
Sbjct: 1286 TETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPD 1345
Query: 489 WVYKLKETLYGLKQAALAWYSRFDKYMHRNVY*R 388
VYKLK++LYGLKQA AWY R ++ +N + R
Sbjct: 1346 HVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFER 1379
Score = 65.9 bits (159), Expect(2) = 2e-30
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Frame = -3
Query: 389 DTSQIHTL*ENRSTK--LVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYY 216
+ Q+ T R+ K ++++ +YVD II + + K + M++E M+ +G+L ++
Sbjct: 1378 ERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFF 1437
Query: 215 WGTQINQKDRVITLCQSMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHR 36
G QINQ + + Q+ Y +LLK F +D ++TP+ D L+R
Sbjct: 1438 LGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYR 1497
Query: 35 SVVGSLTYLT 6
++GSL YLT
Sbjct: 1498 GMIGSLLYLT 1507
>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 822
Score = 85.5 bits (210), Expect(2) = 2e-30
Identities = 47/97 (48%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Frame = -2
Query: 663 ETFPPMARIKLVRAILGYAAHMGLMV*QLDVKCV-LNGVLSEEVYRQQPKGFVSLGKENW 487
ETF P++R + +R IL AA + QLDVK LNG L EE+Y +QP GF GKE+
Sbjct: 543 ETFAPVSRHETIRLILVVAAQRKWKLFQLDVKSAFLNGTLEEEIYAEQPLGFEEEGKEDH 602
Query: 486 VYKLKETLYGLKQAALAWYSRFDKYMHRNVY*RYISD 376
V +L + LYGLKQA AWYSR D++ R + R +D
Sbjct: 603 VLRLHKALYGLKQAPRAWYSRIDEFFQRENFTRSDND 639
Score = 75.1 bits (183), Expect(2) = 2e-30
Identities = 44/114 (38%), Positives = 65/114 (57%)
Frame = -3
Query: 347 KLVLMLVYVDGIIIAGNDRRIVK*LKRAMREES*MTDLGKLLYYWGTQINQKDRVITLCQ 168
KL+++ +YVD +I+ G+D +V+ K AM+ E M+DLG L Y+ G +I Q I L Q
Sbjct: 650 KLLVVCIYVDDLIVTGDDEEMVEEFKTAMKNEFEMSDLGLLNYFLGMEIVQSLEGIFLSQ 709
Query: 167 SMYVSDLLKIFDWDDNNPVSTPIXXXXXXXXXXXNQPADDHLHRSVVGSLTYLT 6
Y LLK F+ +D+ +STP+ AD ++RS+VG L YLT
Sbjct: 710 ECYARKLLKKFNMEDSKIMSTPL-LPQRKDQEEDESLADSKVYRSLVGGLLYLT 762