BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00026608
         (806 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]               76   1e-11
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]               76   2e-11
emb|CCH50966.1| T4.5 [Malus x robusta]                                 75   4e-11
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]               74   6e-11
ref|XP_003381524.1| putative integrase core domain protein [Tric...    73   1e-10
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]               72   3e-10
gb|EMJ27942.1| hypothetical protein PRUPE_ppa019101mg, partial [...    68   4e-09
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                   67   7e-09
ref|XP_006408604.1| hypothetical protein EUTSA_v10002214mg, part...    63   1e-07
ref|XP_006409464.1| hypothetical protein EUTSA_v10023107mg, part...    62   2e-07
emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]    60   7e-07
gb|EPS62306.1| hypothetical protein M569_12485 [Genlisea aurea]        60   1e-06
emb|CAN80558.1| hypothetical protein VITISV_023041 [Vitis vinifera]    59   2e-06
emb|CCO35905.1| Retrovirus-related Pol polyprotein from transpos...    59   2e-06
emb|CCO34576.1| Retrovirus-related Pol polyprotein from transpos...    59   3e-06
gb|AAK29467.1| polyprotein-like [Solanum chilense]                     59   3e-06
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi...    58   3e-06
emb|CCO30981.1| Retrovirus-related Pol polyprotein from transpos...    58   4e-06
ref|XP_005717320.1| Retrovirus-related Gag-Pol polyprotein [Chon...    57   6e-06
ref|XP_005714974.1| unnamed protein product [Chondrus crispus] g...    57   6e-06

>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 76.3 bits (186), Expect = 1e-11
 Identities = 53/198 (26%), Positives = 98/198 (49%), Gaps = 3/198 (1%)
 Frame = -1

Query: 806 NHSNYQTWKIKMTNLLKGNHLFDIVSYPPPPYPNELWIRKNNFVILNLTLAMTDETLPHI 627
           N  N+  WK+K+  +L+ ++  D +   P    +E W   ++  + NL LAM D  L  I
Sbjct: 11  NGRNFSLWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSI 70

Query: 626 DGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLITEVLTLRKQIHIQ 447
              + A  +W  L+++++VK+      LK +L TL + E+ S+   I  + TL  Q+   
Sbjct: 71  AEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTAS 130

Query: 446 G*LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKISFNNLC*KLYSKEI---VLQSEQQH 276
              I++++     L++LP +Y+ L  II+     I+ NN+   L+  ++   +L+ E + 
Sbjct: 131 DFKIAENERAELLLQSLPDSYDQL--IIN-----ITNNNIADTLHFDDVAGAILEEESRR 183

Query: 275 SVCFIKNSEKRQFPKKNS 222
                KN E+R    K +
Sbjct: 184 -----KNKEERSESSKQA 196


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 75.9 bits (185), Expect = 2e-11
 Identities = 53/198 (26%), Positives = 98/198 (49%), Gaps = 3/198 (1%)
 Frame = -1

Query: 806 NHSNYQTWKIKMTNLLKGNHLFDIVSYPPPPYPNELWIRKNNFVILNLTLAMTDETLPHI 627
           N  N+  WK+K+  +L+ ++  D +   P    +E W   ++  + NL LAM D  L  I
Sbjct: 11  NGRNFSLWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSI 70

Query: 626 DGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLITEVLTLRKQIHIQ 447
              + A  +W  L+++++VK+      LK +L TL + E+ S+   I  + TL  Q+   
Sbjct: 71  AEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTAS 130

Query: 446 G*LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKISFNNLC*KLYSKEI---VLQSEQQH 276
              I++++     L++LP +Y+ L  II+     I+ NN+   L+  ++   +L+ E + 
Sbjct: 131 DFKIAENERAELLLQSLPDSYDQL--IIN-----ITNNNITDTLHFDDVAGAILEEESRR 183

Query: 275 SVCFIKNSEKRQFPKKNS 222
                KN E+R    K +
Sbjct: 184 -----KNKEERSESSKQA 196


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 74.7 bits (182), Expect = 4e-11
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 15/190 (7%)
 Frame = -1

Query: 806 NHSNYQTWKIKMTNLLKGNHLFDIVSYP---PPPY---------PN---ELWIRKNNFVI 672
           N  NY TW+     +LK   L  +V+     PPP+         PN   E W  ++  ++
Sbjct: 279 NRQNYITWRSLFIPVLKRFKLIGLVNGEDLCPPPFVRDPSGTCVPNASFETWCERDQILM 338

Query: 671 LNLTLAMTDETLPHIDGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIAS 492
           + +   ++ + LP   G +D+ S+WQ+L   F   + T +  L+ K+ T+   ++ S+  
Sbjct: 339 IWINSTLSKDLLPLTIGMEDSRSLWQSLERRFSGASRTHVHSLRSKIQTIHKGDS-SMTD 397

Query: 491 LITEVLTLRKQIHIQG*LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKISFNNLC*KLY 312
            +  +  +  ++   G  +S+ DLV Y L  LP  Y S  + I+   E ++ + L   L 
Sbjct: 398 FLNSIKEISNKLAAAGEPLSESDLVAYILSGLPDEYESFVDSIETRNESVTADELHGLLL 457

Query: 311 SKEIVLQSEQ 282
           SKEI LQ  +
Sbjct: 458 SKEISLQKRK 467


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 73.9 bits (180), Expect = 6e-11
 Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 3/198 (1%)
 Frame = -1

Query: 806 NHSNYQTWKIKMTNLLKGNHLFDIVSYPPPPYPNELWIRKNNFVILNLTLAMTDETLPHI 627
           N   +  WK+K+  +L+ ++  D +   P    +E W   ++  + NL LAM D  L  I
Sbjct: 11  NGRKFSLWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSI 70

Query: 626 DGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLITEVLTLRKQIHIQ 447
              + A  +W  L+++++VK+      LK +L TL + E+ S+   I  + TL  Q+   
Sbjct: 71  AEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTAS 130

Query: 446 G*LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKISFNNLC*KLYSKEI---VLQSEQQH 276
              I++++     L++LP +Y+ L  II+     I+ NN+   L+  ++   +L+ E + 
Sbjct: 131 DFKIAENERAELLLQSLPDSYDQL--IIN-----ITNNNIADTLHFDDVAGAILEEESRR 183

Query: 275 SVCFIKNSEKRQFPKKNS 222
                KN E+R    K +
Sbjct: 184 -----KNKEERSESSKQA 196


>ref|XP_003381524.1| putative integrase core domain protein [Trichinella spiralis]
           gi|316979667|gb|EFV62422.1| putative integrase core
           domain protein [Trichinella spiralis]
          Length = 1133

 Score = 73.2 bits (178), Expect = 1e-10
 Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 1/154 (0%)
 Frame = -1

Query: 806 NHSNYQTWKIKMTNLLKGNHLFDIVSYPPP-PYPNELWIRKNNFVILNLTLAMTDETLPH 630
           N SNYQ WK+KM  LL  + L+D+VS P P P P + W RK    I  + L + D+ L H
Sbjct: 19  NSSNYQLWKLKMKVLLMRDGLWDLVSQPKPCPIPED-WSRKECKAIAAICLTVEDDQLIH 77

Query: 629 IDGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLITEVLTLRKQIHI 450
           +   + A  MWQ L  + +  +      L  KL  +      ++ S I  +L +  Q+  
Sbjct: 78  LAQLETAREMWQTLQRLHERASIGSKLYLMRKLYGMRFTHG-TMKSHINGILEIVTQLRG 136

Query: 449 QG*LISDDDLVYYTLKALPTAYNSLKEIIDHTGE 348
            G  I D+DLV   L +LP +Y++L   ++   E
Sbjct: 137 LGKNIEDEDLVAIMLCSLPDSYSALVTALEGRDE 170


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 71.6 bits (174), Expect = 3e-10
 Identities = 52/198 (26%), Positives = 96/198 (48%), Gaps = 3/198 (1%)
 Frame = -1

Query: 806 NHSNYQTWKIKMTNLLKGNHLFDIVSYPPPPYPNELWIRKNNFVILNLTLAMTDETLPHI 627
           N  N+  WK+K+  +L+ ++  D +        +E W   ++  + NL LAM D  L  I
Sbjct: 11  NGRNFSLWKLKIRAILRKDNCLDAIDGRLADITDEKWKEMDDNAVANLHLAMADSVLSSI 70

Query: 626 DGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLITEVLTLRKQIHIQ 447
              + A  +W  L+++++VK+      LK +L TL + E+ S+   I  + TL  Q+   
Sbjct: 71  AEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLQMGESTSVTDHINTLNTLFSQLTAS 130

Query: 446 G*LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKISFNNLC*KLYSKEI---VLQSEQQH 276
              I+ ++     L++LP +Y+ L  II+     I+ NN+   L+  ++   +L+ E + 
Sbjct: 131 DFKIAKNERAELLLQSLPDSYDQL--IIN-----ITNNNIADTLHFDDVAGAILEEESRR 183

Query: 275 SVCFIKNSEKRQFPKKNS 222
                KN E+R    K +
Sbjct: 184 -----KNKEERSESSKQA 196


>gb|EMJ27942.1| hypothetical protein PRUPE_ppa019101mg, partial [Prunus persica]
          Length = 236

 Score = 67.8 bits (164), Expect = 4e-09
 Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 6/175 (3%)
 Frame = -1

Query: 800 SNYQTWKIKMTNLLKGNHLFDIV----SYPP--PPYPNELWIRKNNFVILNLTLAMTDET 639
           +NY +W+ +   LL G  L   V    + PP  P  P  LWIR++  ++  +  +++ + 
Sbjct: 40  TNYPSWRAQFNALLIGYDLMGYVDGSSTCPPDTPVAPRALWIRQDQLLLHVILASVSPQV 99

Query: 638 LPHIDGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLITEVLTLRKQ 459
           +  I   + +   W  L+ +F  K   ++  LKE+L TL   E+  ++  + +V  +  +
Sbjct: 100 ISLIASAKTSKEAWDKLLHLFASKARARVLGLKERL-TLMRREDKPVSQYLQDVKVIADE 158

Query: 458 IHIQG*LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKISFNNLC*KLYSKEIVL 294
           + I    +SDDDL+ Y L  + + +  +  ++      ISF NL  KL   E  L
Sbjct: 159 LAIIDVPLSDDDLLLYILNGVGSEFKEIAAVVRSCDTSISFENLHDKLVEHEAAL 213


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score = 67.0 bits (162), Expect = 7e-09
 Identities = 47/195 (24%), Positives = 92/195 (47%), Gaps = 2/195 (1%)
 Frame = -1

Query: 806 NHSNYQTWKIKMTNLLKGNHLFDIVSYPPPPYPNELWIRKNNFVILNLTLAMTDETLPHI 627
           N SN+  WK+K+  +L+ ++    +   P    ++     ++  + NL LA+ D  L  I
Sbjct: 11  NGSNFSLWKLKIKAILRKDNCLPAIDGRPADITDDKRKEMDDNAVANLHLAVADSVLSSI 70

Query: 626 DGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLITEVLTLRKQIHIQ 447
              + A  +W  L+++++VK+      LK +L T  + E+ S+   I  + T+  Q+   
Sbjct: 71  AEKKTAKKIWDTLIQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHINNLNTMFAQLSAS 130

Query: 446 G*LISDDDLVYYTLKALPTAYNSLKEIIDHTG--EKISFNNLC*KLYSKEIVLQSEQQHS 273
              I +++     L++LP +Y+ L   I +    +++SFN++         +L+ E +  
Sbjct: 131 DFTIGENERAEVLLQSLPDSYDQLVINITNNNIVDRLSFNDVA------GAILEEESRR- 183

Query: 272 VCFIKNSEKRQFPKK 228
               KN E RQ   K
Sbjct: 184 ----KNKEDRQDSSK 194


>ref|XP_006408604.1| hypothetical protein EUTSA_v10002214mg, partial [Eutrema
           salsugineum] gi|557109760|gb|ESQ50057.1| hypothetical
           protein EUTSA_v10002214mg, partial [Eutrema salsugineum]
          Length = 233

 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 40/159 (25%), Positives = 80/159 (50%)
 Frame = -1

Query: 698 WIRKNNFVILNLTLAMTDETLPHIDGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLS 519
           W RKN+   + L   M D+ +   + ++ A  MW+AL + F   +ATKLR L +KLN   
Sbjct: 23  WKRKNSIARITLLSCMQDDLMCEFEEYETAKGMWEALKDKFGATSATKLRRLNQKLNDYK 82

Query: 518 LIENYSIASLITEVLTLRKQIHIQG*LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKIS 339
              N S+   +  +  + +++   G ++S++  V   L++LP +++ +K  + H     +
Sbjct: 83  KRPNQSMRQHLRIMSNMIRELKNAGQIMSNEQQVQAVLRSLPESWDHMKIQMTHNENVKT 142

Query: 338 FNNLC*KLYSKEIVLQSEQQHSVCFIKNSEKRQFPKKNS 222
           F ++     S+ + L+ E+  +    K+  + +F   NS
Sbjct: 143 FEDI-----SRHLELEDERIEA---SKSFNEAKFASSNS 173


>ref|XP_006409464.1| hypothetical protein EUTSA_v10023107mg, partial [Eutrema
           salsugineum] gi|557110626|gb|ESQ50917.1| hypothetical
           protein EUTSA_v10023107mg, partial [Eutrema salsugineum]
          Length = 278

 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 45/192 (23%), Positives = 90/192 (46%)
 Frame = -1

Query: 701 LWIRKNNFVILNLTLAMTDETLPHIDGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTL 522
           +W RKN+   + L   M D  +   + ++ A  MW+AL + F   +ATKLR L +K N  
Sbjct: 67  VWKRKNSIARITLLSCMQDVLMCEFEEYETAKGMWEALKDKFGATSATKLRRLNQKFNDY 126

Query: 521 SLIENYSIASLITEVLTLRKQIHIQG*LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKI 342
               N S+   +  +  + +++   G ++S++  V   L++LP +++ +K  + H   + 
Sbjct: 127 KKRPNQSMRQHLRIMSNMIRELKNAGQIMSNEQQVQAVLRSLPESWDHMKVQMTHNENEK 186

Query: 341 SFNNLC*KLYSKEIVLQSEQQHSVCFIKNSEKRQFPKKNSIESGYCHICEMRDTQPEPVD 162
           +F ++   L  ++  L++ +  S     +S      KK ++     +  E++  Q +   
Sbjct: 187 TFEDISHHLELEDERLEASKSFSEANFASSNSGLKRKKGNMGHKAPYQSELK-RQKKDAK 245

Query: 161 TT*RTSLKDATK 126
              R   KD TK
Sbjct: 246 RGKRGGKKDKTK 257


>emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]
          Length = 590

 Score = 60.5 bits (145), Expect = 7e-07
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 16/214 (7%)
 Frame = -1

Query: 800 SNYQTWKIKMTNLLKGNHLFDIV--SYPPPPYP----------NELWIRKNNFVILNLTL 657
           +N+ +W  +  +LL G +LF  V  ++  PP P          + LW R++  ++  +  
Sbjct: 26  TNFPSWNAQFESLLLGYNLFGYVDGTHTCPPLPTSTDAAATTAHHLWFRQDKLILSAILT 85

Query: 656 AMTDETLPHIDGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLITEV 477
           +++   +P I   + ++  W  L +++  ++ T++  LKE L TL    N SI   +  V
Sbjct: 86  SVSPAVIPLIATSKTSHQAWTKLTKLYASRSRTRVMQLKEDL-TLMQRGNRSITEYLHSV 144

Query: 476 LTLRKQIHIQG*LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKISFNNLC*KLYSKEIV 297
            T+  ++ +    +S DD+  Y L  L + +  +   I      +SF  L   L   E  
Sbjct: 145 KTIADELALIDAPLSQDDITLYVLHGLGSDFRDIVAPIRARESSLSFEELHDLLLGHEAY 204

Query: 296 LQ---SEQQHSVCFIKNSEKRQF-PKKNSIESGY 207
           L+   S  Q  V     +++R     KN   S Y
Sbjct: 205 LRRLDSTAQSLVVTANTTQRRDSRSSKNQSSSTY 238


>gb|EPS62306.1| hypothetical protein M569_12485 [Genlisea aurea]
          Length = 281

 Score = 59.7 bits (143), Expect = 1e-06
 Identities = 42/202 (20%), Positives = 91/202 (45%), Gaps = 13/202 (6%)
 Frame = -1

Query: 806 NHSNYQTWKIKMTNLLKGNHLFDIVS-------------YPPPPYPNELWIRKNNFVILN 666
           N  NY  WK+K+  +++   L + +S             +       + W RKN    + 
Sbjct: 18  NGDNYDNWKMKIQYVIEEQDLLEHLSNTLDQPERGTTAQHRRDAEAYQAWKRKNGQARII 77

Query: 665 LTLAMTDETLPHIDGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLI 486
           L  AM D+       ++ A  +W AL + F V + +KLR L  K +T      + +   +
Sbjct: 78  LLSAMDDDITREFHRYEYAKDLWDALRDKFGVMSVSKLRSLTIKFDTYQKRPEHDMRRHL 137

Query: 485 TEVLTLRKQIHIQG*LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKISFNNLC*KLYSK 306
            E+  +  ++H  G  ++++  +   +++LP ++  +K  + H+    +F+++   L  +
Sbjct: 138 REMSLMMSELHNAGHQLTEEQKIQAVIRSLPNSWEHMKMHLTHSENVRTFDDVSRHLELE 197

Query: 305 EIVLQSEQQHSVCFIKNSEKRQ 240
           E  L++ + +S   +  S  R+
Sbjct: 198 EDRLRAIKINSEVHMARSNSRR 219


>emb|CAN80558.1| hypothetical protein VITISV_023041 [Vitis vinifera]
          Length = 900

 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 3/176 (1%)
 Frame = -1

Query: 800 SNYQTWKIKMTNLLKG---NHLFDIVSYPPPPYPNELWIRKNNFVILNLTLAMTDETLPH 630
           +NY TW +++ +LL+G   +H  D    PPPP       R++      L  A++    P 
Sbjct: 40  TNYLTWSLQIQSLLEGYDLHHFIDDTHTPPPPIVTVTG-RQDCLSFSTLLGAISISLQPL 98

Query: 629 IDGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLITEVLTLRKQIHI 450
           I     +   WQ L   +   +   ++ LKE+L   +   + SI+  +  + T   +  I
Sbjct: 99  IACTTTSLDAWQTLANTYAKPSCGHVKQLKEQLKWCTK-GSKSISEYMQAIKTRADEFAI 157

Query: 449 QG*LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKISFNNLC*KLYSKEIVLQSEQ 282
            G  I D+DL+   L+ L   Y S+ + I+     ISF  +  KL +KE   Q+ Q
Sbjct: 158 LGKPIDDEDLIDQDLEGLSDEYKSIIDAINARDTSISFAEIHEKLLNKEASFQTAQ 213


>emb|CCO35905.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           Includes: RecName: Full=Protease [Rhizoctonia solani
           AG-1 IB]
          Length = 250

 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
 Frame = -1

Query: 800 SNYQTWKIKMTNLLKGNHLFDIVSYP-PPPYP----NEL--WIRKNNFVILNLTLAMTDE 642
           SNY  WK +   +L+   L  +V+   P P P    NE   W  ++   +L + L+++D 
Sbjct: 23  SNYVAWKTRSMQILRTQKLDSVVTGTNPKPSPGAADNEAKDWETRDQEALLQIMLSVSDG 82

Query: 641 TLPHIDGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLITEVLTLRK 462
            L HI  H  A   W AL   ++      L  L EKL +    +   +A    +  ++  
Sbjct: 83  ALKHIGHHTSAKPAWDALQHRWEGHGVQSLVFLVEKLFSDKAPKGKPLADFTAKQRSIAT 142

Query: 461 QIHIQG*LISDDDLVYYTLKALPTAYNSLKEII--DHTGEKISFN 333
            +H  G  + +  L    L +LP +YN+L+ +I    T EK++F+
Sbjct: 143 NVHNLGLELPEPLLALILLHSLPPSYNTLRTVIAGSTTLEKLTFD 187


>emb|CCO34576.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           Includes: RecName: Full=Protease [Rhizoctonia solani
           AG-1 IB]
          Length = 910

 Score = 58.5 bits (140), Expect = 3e-06
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
 Frame = -1

Query: 800 SNYQTWKIKMTNLLKGNHLFDIVSYP-PPPYP----NEL--WIRKNNFVILNLTLAMTDE 642
           SNY  WK +   +L+   L  +V+   P P P    NE   W  ++   +L + L+++D 
Sbjct: 23  SNYVAWKTRSMQILRTRKLDSVVTGTNPKPSPGAAANEAKDWETRDQEALLQIMLSVSDG 82

Query: 641 TLPHIDGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLITEVLTLRK 462
            L HI  H  A S W AL   ++      L  L EKL +    E   +A    +  ++  
Sbjct: 83  ALKHIGHHTSAKSAWDALQHRWEGHGVQSLVFLVEKLFSDKAPEGKPLADFTAKQRSIAT 142

Query: 461 QIHIQG*LISDDDLVYYTLKALPTAYNSLKEII--DHTGEKISFN 333
            +H  G  + +  L    L +LP +Y++L  +I    T EK++F+
Sbjct: 143 NVHNLGLELPEPLLALILLHSLPPSYDTLCTVIAGSTTLEKLTFD 187


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score = 58.5 bits (140), Expect = 3e-06
 Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 3/194 (1%)
 Frame = -1

Query: 794 YQTWKIKMTNLLKGNHLFDIV---SYPPPPYPNELWIRKNNFVILNLTLAMTDETLPHID 624
           +  W+ +M +LL    L   +   S  P     E W   +      + L +TD+ + +I 
Sbjct: 18  FSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAASAIRLHLTDDVVNNIV 77

Query: 623 GHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLITEVLTLRKQIHIQG 444
             + A  +W  L  ++  K  T    LK++L TL + E  +  S +  +  L  Q+   G
Sbjct: 78  DEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSHLNVLNGLITQLANLG 137

Query: 443 *LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKISFNNLC*KLYSKEIVLQSEQQHSVCF 264
             I ++D     L +LP++Y++L   I H  + I   ++   L   E + +  + H   F
Sbjct: 138 VKIEEEDKRIVLLNSLPSSYDTLSTTILHGKDSIQLKDVTSALLLNEKMRKKPENHGQVF 197

Query: 263 IKNSEKRQFPKKNS 222
           I  S  R + + +S
Sbjct: 198 ITESRGRSYQRSSS 211


>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1499

 Score = 58.2 bits (139), Expect = 3e-06
 Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 25/230 (10%)
 Frame = -1

Query: 806 NHSNYQTWKIKMTNLLKGNHLFDIV-----------SYPPPPYPNELWIRKNNFVILNLT 660
           N  +Y  WKIKM  +LK   L+D++           + P      +  + K+   +  L 
Sbjct: 13  NGESYGFWKIKMITILKTRKLWDVIENGVTSNSSPETSPALTRERDDQVMKDMMALQILQ 72

Query: 659 LAMTDETLPHIDGHQDAYSMWQALVEIFDVKNATK---LRCLKEKLNTLSLIENYSIASL 489
            A++D   P I     A   W AL   F   +  K   L+ L+ +   L + E  +I   
Sbjct: 73  SAVSDSIFPRIAPASSATEAWNALEMEFQGSSQVKMINLQTLRREYENLKMEEGETINDF 132

Query: 488 ITEVLTLRKQIHIQG*LISDDDLVYYTLKALPTAYNSLKEIIDHTGE--KISFNNL--C* 321
            T+++ L  Q+ + G   SD  +V   L ++P  ++S+  +++ T +   +S   L    
Sbjct: 133 TTKLINLSNQLRVHGEEKSDYQVVQKILISVPQQFDSIVGVLEQTKDLSTLSVTELIGTL 192

Query: 320 KLYSKEIVLQSEQQHSVCFIKNSEK---RQFPKKNSIESG----YCHICE 192
           K + + + L+ ++ +   F  N EK   R   K+N I  G    +C +C+
Sbjct: 193 KAHERRLNLREDRINEGAF--NGEKLGSRGENKQNKIRHGKTNMWCGVCK 240


>emb|CCO30981.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           Includes: RecName: Full=Protease [Rhizoctonia solani
           AG-1 IB]
          Length = 621

 Score = 57.8 bits (138), Expect = 4e-06
 Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 19/175 (10%)
 Frame = -1

Query: 800 SNYQTWKIKMTNLLKGNHLFDIVSYPPPP-----------------YPNEL--WIRKNNF 678
           SNY  WK +   +L    L +I      P                 Y ++L  W +++  
Sbjct: 22  SNYTAWKFRQEIVLGLRGLIEIAEGTDEPPEQLTEAEAREDSKVSGYQDQLAKWKKRDRE 81

Query: 677 VILNLTLAMTDETLPHIDGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSI 498
               +TL M DE +  +   + A   W+ ++E ++ K    L  L ++L T  + E+  I
Sbjct: 82  AYAQITLNMEDEAMADVMRTRTARDAWKKVIERWEGKGVQSLSFLYQQLTTAKIEEDEDI 141

Query: 497 ASLITEVLTLRKQIHIQG*LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKISFN 333
           A+    + +L K++   G  ISD  L    + ALP +Y+ +  +I  T +  + N
Sbjct: 142 ATAFNNIRSLAKKMETLGEPISDLMLAQMMMTALPPSYSVVTSVIQTTNQASAVN 196


>ref|XP_005717320.1| Retrovirus-related Gag-Pol polyprotein [Chondrus crispus]
           gi|515797406|emb|CDF77536.1| Retrovirus-related Gag-Pol
           polyprotein [Chondrus crispus]
          Length = 1365

 Score = 57.4 bits (137), Expect = 6e-06
 Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 4/181 (2%)
 Frame = -1

Query: 800 SNYQTWKIKMTNLLK----GNHLFDIVSYPPPPYPNELWIRKNNFVILNLTLAMTDETLP 633
           SN+  WK K+  LL       ++FD +S          WIR +      + L ++D+ L 
Sbjct: 17  SNFYIWKQKIELLLALRDVDQYVFDDISENATSDDRRKWIRGDAKAKAVIGLTLSDDYLQ 76

Query: 632 HIDGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLITEVLTLRKQIH 453
           H+ G   A   W+A++ +F+          +    T+S++ +  +   I  V  L  ++ 
Sbjct: 77  HVRGCSSAKETWEAILNVFERHTLLNKLSARRDFYTVSMLPSEKVLVFINRVKQLAARLQ 136

Query: 452 IQG*LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKISFNNLC*KLYSKEIVLQSEQQHS 273
                I D ++    L  LP  +++L   +D  G +     L    + K  +LQ EQ+ S
Sbjct: 137 SMSVEIDDKEIAMAVLNGLPPRFDNLIVALDALGNEDKVFGLD---FVKSRLLQEEQRES 193

Query: 272 V 270
           +
Sbjct: 194 M 194


>ref|XP_005714974.1| unnamed protein product [Chondrus crispus]
           gi|507111432|emb|CDF35155.1| unnamed protein product
           [Chondrus crispus]
          Length = 533

 Score = 57.4 bits (137), Expect = 6e-06
 Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 4/181 (2%)
 Frame = -1

Query: 800 SNYQTWKIKMTNLLK----GNHLFDIVSYPPPPYPNELWIRKNNFVILNLTLAMTDETLP 633
           SN+  WK K+  LL       ++FD +S          WIR +      + L ++D+ L 
Sbjct: 17  SNFYIWKQKIELLLALRDVDQYVFDDISENATSDDRRKWIRGDAKAKAVIGLTLSDDYLQ 76

Query: 632 HIDGHQDAYSMWQALVEIFDVKNATKLRCLKEKLNTLSLIENYSIASLITEVLTLRKQIH 453
           H+ G   A   W+A++ +F+          +    T+S++ +  +   I  V  L  ++ 
Sbjct: 77  HVRGCSSAKETWEAILNVFERHTLLNKLSARRDFYTVSMLPSEKVLVFINRVKQLAARLQ 136

Query: 452 IQG*LISDDDLVYYTLKALPTAYNSLKEIIDHTGEKISFNNLC*KLYSKEIVLQSEQQHS 273
                I D ++    L  LP  +++L   +D  G +     L    + K  +LQ EQ+ S
Sbjct: 137 SMSVEIDDKEIAMAVLNGLPPRFDNLIVALDALGNEDKVFGLD---FVKSRLLQEEQRES 193

Query: 272 V 270
           +
Sbjct: 194 M 194