BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00026307
         (418 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||B84500 probable retroelement pol polyprotein [imported] - A...    63   5e-08

>pir||B84500 probable retroelement pol polyprotein [imported] - Arabidopsis
           thaliana
          Length = 616

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 35/125 (28%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
 Frame = +2

Query: 14  VKTAGEERLPIIGVGDIQLNFGGSLIYLKDAYLVKGLRRSLISPYQLLHEKYQLLAY*KR 193
           +K    E + I G GDI +        +++ +LV GL ++L+S  Q++   Y +L     
Sbjct: 141 IKVGNREVVMIAGKGDITVCTSFRKKVIRNVFLVSGLEKNLLSVPQIISVGYSVLF---- 196

Query: 194 DGMMCYRISKDNRVIAEGTQINSLFIMR---PMQSEVFLTEEENSKLWHKRLGHINTSYL 364
           +   C  + +  + I E  ++N  F +R     +SE+  +EEE  +LWH+RLGH+  S +
Sbjct: 197 ENKCCTNLDRTGKKIMEIQRVNKSFPIRWNSSQESELVTSEEEGMELWHRRLGHVGNSRM 256

Query: 365 KRVND 379
           +++++
Sbjct: 257 EQMHN 261