BLASTX nr result
ID: Ephedra27_contig00026111
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00026111
(745 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi... 256 4e-66
ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela... 249 5e-64
ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Sela... 249 7e-64
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A... 245 1e-62
ref|XP_001416093.1| predicted protein [Ostreococcus lucimarinus ... 239 7e-61
ref|XP_003075225.1| RNA polymerase I, large subunit (ISS) [Ostre... 236 5e-60
ref|XP_002502032.1| predicted protein [Micromonas sp. RCC299] gi... 216 8e-54
ref|XP_003057499.1| predicted protein [Micromonas pusilla CCMP15... 215 1e-53
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 208 2e-51
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 208 2e-51
tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family... 207 4e-51
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 206 5e-51
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 205 1e-50
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 201 2e-49
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 199 6e-49
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 199 8e-49
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao] 197 2e-48
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 195 2e-47
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [... 192 8e-47
ref|XP_002291242.1| DNA directed RNA polymerase III, largest sub... 191 2e-46
>ref|XP_001757221.1| predicted protein [Physcomitrella patens]
gi|162691719|gb|EDQ78080.1| predicted protein
[Physcomitrella patens]
Length = 1397
Score = 256 bits (655), Expect = 4e-66
Identities = 114/185 (61%), Positives = 149/185 (80%), Gaps = 1/185 (0%)
Frame = +3
Query: 192 SINFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDT 371
SINF+K+PFIED GPRKI+S+ F TMS +IVKA+ELHVYE+ L+ P+R P P+ ++DT
Sbjct: 11 SINFSKRPFIEDVGPRKIESIRFGTMSKQDIVKASELHVYESMLYTMPERNPAPYSVVDT 70
Query: 372 HLGTSYKIGQCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARVLLS 551
LGT+ K G+C+TC GK +DCPGH+G+ KL +PVFH+GY KNIL ILQCICKSCAR+L+
Sbjct: 71 RLGTTNKKGECSTCFGKLADCPGHFGHTKLEMPVFHIGYLKNILQILQCICKSCARILMP 130
Query: 552 EDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTVKKLTS-TLRITH 728
E++ KL LR+MRNPR EVLQ+RA+ K + D+CKRV+ C RCGDYNG VKK+ +++ H
Sbjct: 131 EEECKLILRKMRNPRIEVLQRRAVLKKVIDRCKRVRVCTRCGDYNGVVKKMAQPPVKLIH 190
Query: 729 EKYSK 743
+KY K
Sbjct: 191 DKYGK 195
>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
gi|300146624|gb|EFJ13293.1| hypothetical protein
SELMODRAFT_446351 [Selaginella moellendorffii]
Length = 1393
Score = 249 bits (637), Expect = 5e-64
Identities = 114/187 (60%), Positives = 148/187 (79%), Gaps = 3/187 (1%)
Frame = +3
Query: 192 SINFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDT 371
SINFTK ++DAGPRKIKS+ F+TMS E+ K AE+ ++E SL+ P+RKP P+G+LDT
Sbjct: 15 SINFTKGLHLDDAGPRKIKSMRFSTMSSEEVTKTAEVQIFEHSLYQLPERKPLPYGVLDT 74
Query: 372 HLGTSYKIGQCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICK---SCARV 542
LGTS K GQC TC+GK +DCPGH+GYIKL LPVFH+GYFK+I+ ILQCICK S V
Sbjct: 75 RLGTSNKKGQCTTCDGKLADCPGHFGYIKLELPVFHIGYFKDIIVILQCICKASFSLLEV 134
Query: 543 LLSEDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTVKKLTSTLRI 722
+ S+++R+ + RRM+NPR+E+L+K+ K IND CK+V+ CPRCGD NG VKKL STL+I
Sbjct: 135 VASQEERQKWQRRMQNPRSEILRKKEYLKKINDLCKKVRACPRCGDINGVVKKLGSTLKI 194
Query: 723 THEKYSK 743
H+KY+K
Sbjct: 195 IHDKYAK 201
>ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
gi|300158014|gb|EFJ24638.1| hypothetical protein
SELMODRAFT_442419 [Selaginella moellendorffii]
Length = 1348
Score = 249 bits (636), Expect = 7e-64
Identities = 114/187 (60%), Positives = 148/187 (79%), Gaps = 3/187 (1%)
Frame = +3
Query: 192 SINFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDT 371
SINFTK ++DAGPRKIKS+ F+TMS E+ K AE+ ++E SL+ P+RKP P+G+LDT
Sbjct: 15 SINFTKGLHLDDAGPRKIKSMRFSTMSSEEVTKTAEVQIFEHSLYQLPERKPLPYGVLDT 74
Query: 372 HLGTSYKIGQCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICK---SCARV 542
LGTS K GQC TC+GK +DCPGH+GYIKL LPVFH+GYFK+I+ ILQCICK S V
Sbjct: 75 RLGTSNKKGQCTTCDGKLADCPGHFGYIKLELPVFHIGYFKDIIVILQCICKASFSFLEV 134
Query: 543 LLSEDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTVKKLTSTLRI 722
+ S+++R+ + RRM+NPR+E+L+K+ K IND CK+V+ CPRCGD NG VKKL STL+I
Sbjct: 135 VASQEERQKWQRRMQNPRSEILRKKEYLKKINDLCKKVRACPRCGDINGVVKKLGSTLKI 194
Query: 723 THEKYSK 743
H+KY+K
Sbjct: 195 IHDKYAK 201
>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
gi|548832896|gb|ERM95665.1| hypothetical protein
AMTR_s00023p00196820 [Amborella trichopoda]
Length = 1383
Score = 245 bits (626), Expect = 1e-62
Identities = 112/181 (61%), Positives = 137/181 (75%)
Frame = +3
Query: 192 SINFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDT 371
+ NFTK+PF+ED GPRKIKSV F +SG EIVKAAE VY+ + D KP HG+LDT
Sbjct: 7 AFNFTKKPFVEDIGPRKIKSVQFCMLSGPEIVKAAETQVYKRDYYNRTDLKPAEHGVLDT 66
Query: 372 HLGTSYKIGQCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARVLLS 551
+G S K G CATC G F CPGH+GY+KLALPVFHVGYF+ + +LQCICKSCAR+LL
Sbjct: 67 RMGFSTKSGSCATCFGDFQTCPGHFGYLKLALPVFHVGYFRTTIIVLQCICKSCARILLF 126
Query: 552 EDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTVKKLTSTLRITHE 731
E++RK FL+++RNPRAE+ QK K + DKCKRV+ CPRCGDYNG VKK T RI+H+
Sbjct: 127 EEERKQFLKKIRNPRAELHQKNDFVKKVIDKCKRVRICPRCGDYNGVVKKAGPTFRISHD 186
Query: 732 K 734
+
Sbjct: 187 R 187
>ref|XP_001416093.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576317|gb|ABO94385.1| predicted protein
[Ostreococcus lucimarinus CCE9901]
Length = 1395
Score = 239 bits (610), Expect = 7e-61
Identities = 105/187 (56%), Positives = 140/187 (74%), Gaps = 1/187 (0%)
Frame = +3
Query: 186 TVSINFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGIL 365
T +I+FTK PF + PRKI +V F+ MS +EI +A HV+E +L+ P R P P+GIL
Sbjct: 15 TAAIDFTKTPFAPASTPRKISAVRFSLMSSSEIGRAGVFHVFERNLYQMPQRTPMPNGIL 74
Query: 366 DTHLGTSYKIG-QCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARV 542
D +GT+ K G +CATC G DC GH+GYIKL LPVFH+GYFKNI+++LQC+CK+C+R+
Sbjct: 75 DPRMGTTDKRGGECATCRGNMVDCAGHFGYIKLELPVFHIGYFKNIISVLQCVCKNCSRI 134
Query: 543 LLSEDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTVKKLTSTLRI 722
LL+EDD+ +FL+R RNPR E+ Q+R L+K + +KCKR + CP CGDYNG K+ TL+I
Sbjct: 135 LLNEDDQDMFLKRYRNPRLEITQRRLLYKKLTEKCKRCRTCPHCGDYNGVTKRAGQTLKI 194
Query: 723 THEKYSK 743
HEKYSK
Sbjct: 195 VHEKYSK 201
>ref|XP_003075225.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
gi|116061779|emb|CAL52497.1| RNA polymerase I, large
subunit (ISS) [Ostreococcus tauri]
Length = 1406
Score = 236 bits (603), Expect = 5e-60
Identities = 107/198 (54%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Frame = +3
Query: 153 RDNPFAHNPGPTVSINFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMF 332
RD+ P +I FTK PF + PRKI+SV F+ MS +EI +A HV+E +L+
Sbjct: 5 RDDVRQEAPADAAAIEFTKIPFAPASTPRKIRSVKFSLMSSSEIARAGVFHVFERNLYQM 64
Query: 333 PDRKPCPHGILDTHLGTSYKIG-QCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNI 509
P R P +GILD +GT+ K G +CATC G DC GH+GYIKL LPVFH+GYFKNI+++
Sbjct: 65 PQRTPMVNGILDPRMGTTDKRGGECATCRGSMVDCAGHFGYIKLELPVFHIGYFKNIISV 124
Query: 510 LQCICKSCARVLLSEDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNG 689
LQC+CK C+R+LL+EDD+ FL+R RNPR E+ Q+R L+K + +KCKR + CP CGDYNG
Sbjct: 125 LQCVCKGCSRILLNEDDQATFLKRYRNPRLELTQRRLLYKKLTEKCKRCRICPHCGDYNG 184
Query: 690 TVKKLTSTLRITHEKYSK 743
K+ TL+I HEKYSK
Sbjct: 185 VTKRAGQTLKIVHEKYSK 202
>ref|XP_002502032.1| predicted protein [Micromonas sp. RCC299]
gi|226517297|gb|ACO63290.1| predicted protein
[Micromonas sp. RCC299]
Length = 1479
Score = 216 bits (549), Expect = 8e-54
Identities = 101/184 (54%), Positives = 132/184 (71%), Gaps = 1/184 (0%)
Frame = +3
Query: 195 INFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDTH 374
+ F+K PF E PRKI+SV F+ MS EI K HV+E +L+ P R P +GILD
Sbjct: 20 LEFSKAPFNELNAPRKIRSVRFSLMSPQEIGKCGVFHVFERNLYQMPQRVPLKNGILDPR 79
Query: 375 LGTSYKIG-QCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARVLLS 551
+GT+ K G +CATC GK DC GH+GY+KL LPVFH+GYFKNI+ ILQ +CK C+RV+L
Sbjct: 80 MGTTDKKGTECATCKGKLIDCAGHFGYVKLELPVFHIGYFKNIIAILQQVCKECSRVMLP 139
Query: 552 EDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTVKKLTSTLRITHE 731
E++R+ +L+R RNPR E++ KRAL K + DKCKR + CP CG NG VK+ ++L+I HE
Sbjct: 140 EEERQQYLKRFRNPRLEIVPKRALSKKLADKCKRCRICPSCGAANGAVKRTGASLKIVHE 199
Query: 732 KYSK 743
KYSK
Sbjct: 200 KYSK 203
>ref|XP_003057499.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461851|gb|EEH59144.1| predicted protein
[Micromonas pusilla CCMP1545]
Length = 1591
Score = 215 bits (548), Expect = 1e-53
Identities = 100/184 (54%), Positives = 130/184 (70%), Gaps = 1/184 (0%)
Frame = +3
Query: 195 INFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDTH 374
+ FTK PF E PRKI+SV F+ MS EI K HVYE +L+ P R P P GILD
Sbjct: 20 VEFTKDPFEEPTAPRKIRSVRFSLMSPQEISKVGVFHVYERNLYQMPQRVPLPGGILDPR 79
Query: 375 LGTSYKIG-QCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARVLLS 551
+GT+ K G +CATC GK DC GH+GY+KL LPVFH+GYFKN+++ILQ +CK+C+RV+L
Sbjct: 80 MGTTDKKGAECATCKGKLIDCAGHFGYVKLELPVFHIGYFKNVISILQQVCKTCSRVMLP 139
Query: 552 EDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTVKKLTSTLRITHE 731
E++ + +LRR RNPR E + +RAL K + D+CKR + C CG NG VK+ +L+I HE
Sbjct: 140 EEEHEQYLRRFRNPRLENVPRRALSKKMADRCKRCRTCYYCGAANGVVKRAGQSLKIVHE 199
Query: 732 KYSK 743
KYSK
Sbjct: 200 KYSK 203
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 208 bits (529), Expect = 2e-51
Identities = 98/183 (53%), Positives = 134/183 (73%)
Frame = +3
Query: 183 PTVSINFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGI 362
P + TK+PFIED G R+IKS+ F+ +SG+EI K+AE+ V+ ++ D KP P+G+
Sbjct: 4 PEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYGH-DMKPVPNGL 62
Query: 363 LDTHLGTSYKIGQCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARV 542
LD +G K +C+TC+G+FSDCPGH+GY+KLALPVF+VG+F IL++L+CICKSC+RV
Sbjct: 63 LDPRMGVPNKREKCSTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRV 122
Query: 543 LLSEDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTVKKLTSTLRI 722
LL E DR+ FL++MRNPRA+ LQK A K + DKCK + CPRC NG VKK + L +
Sbjct: 123 LLFEKDRREFLKKMRNPRADALQKSATMKKVRDKCK-LSCCPRCDYRNGVVKKGRAGLIV 181
Query: 723 THE 731
H+
Sbjct: 182 VHD 184
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 208 bits (529), Expect = 2e-51
Identities = 95/183 (51%), Positives = 136/183 (74%)
Frame = +3
Query: 183 PTVSINFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGI 362
P + TK+PFIED G R+IKS+ F+ SG E+ ++AE+ V+ + ++ + KP P+G+
Sbjct: 4 PEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNH-EMKPVPNGL 62
Query: 363 LDTHLGTSYKIGQCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARV 542
LDT +G + K+G+C+TC+G F++CPGH+GY+KLALPVF+VG+F IL++L+CICKSC+RV
Sbjct: 63 LDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRV 122
Query: 543 LLSEDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTVKKLTSTLRI 722
LL E DR FL++MRNP+A+ LQK A+ K + DKCK + RCP CG NG KK + L I
Sbjct: 123 LLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCK-LSRCPWCGFINGVAKKGRAGLII 181
Query: 723 THE 731
H+
Sbjct: 182 LHD 184
>tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 1030
Score = 207 bits (526), Expect = 4e-51
Identities = 98/183 (53%), Positives = 133/183 (72%)
Frame = +3
Query: 183 PTVSINFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGI 362
P + TK+PFIED G R+IKS+ F+ +SG+EI K+AE+ V+ ++ D P P+G+
Sbjct: 4 PEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYD-RDMTPVPNGL 62
Query: 363 LDTHLGTSYKIGQCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARV 542
LD +G K G+C TC+G+FSDCPGH+GY+KLALPVF+VG+F IL++L+CICKSC+RV
Sbjct: 63 LDPRMGIPTKRGKCNTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRV 122
Query: 543 LLSEDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTVKKLTSTLRI 722
LL E DR+ FL++MRNPRA+ LQK A K + DKCK + CPRC NG VKK + L +
Sbjct: 123 LLIEKDRREFLKKMRNPRADALQKSATMKKVRDKCK-LSCCPRCDYRNGVVKKGRAGLIV 181
Query: 723 THE 731
H+
Sbjct: 182 VHD 184
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 206 bits (525), Expect = 5e-51
Identities = 94/183 (51%), Positives = 136/183 (74%)
Frame = +3
Query: 183 PTVSINFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGI 362
P + TK+PFIEDAG R+IKS+ F+ SG E+ ++AE+ V+ + ++ + +P P+G+
Sbjct: 4 PEEKLRCTKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYN-QEMRPVPNGL 62
Query: 363 LDTHLGTSYKIGQCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARV 542
LDT +G + K+G+C+TC+G F++CPGH+GY+KLALPVF+VG+F IL++L+CICK C+RV
Sbjct: 63 LDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGCSRV 122
Query: 543 LLSEDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTVKKLTSTLRI 722
LL E DR FL++MRNP+A+ LQK A+ K + DKCK + RCP CG NG KK + L I
Sbjct: 123 LLVEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCK-LSRCPWCGFINGVAKKGRAGLII 181
Query: 723 THE 731
H+
Sbjct: 182 LHD 184
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 205 bits (522), Expect = 1e-50
Identities = 96/184 (52%), Positives = 138/184 (75%), Gaps = 1/184 (0%)
Frame = +3
Query: 183 PTVSINFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGI 362
P + TK+PFIED G R+IKS+ F+ SG E+ ++AE+ V+ + ++ + KP P+G+
Sbjct: 4 PEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNH-EMKPVPNGL 62
Query: 363 LDTHLGTSYKIGQCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARV 542
LDT +G + K+G+C+TC+G F++CPGH+GY+KLALPVF+VG+F IL++L+CICKSC+RV
Sbjct: 63 LDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRV 122
Query: 543 LLSEDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTV-KKLTSTLR 719
LL E DR FL++MRNP+A+ LQK A+ K + DKCK + RCP CG NG+V KK + L
Sbjct: 123 LLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCK-LSRCPWCGFINGSVAKKGRAGLI 181
Query: 720 ITHE 731
I H+
Sbjct: 182 ILHD 185
>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Cucumis sativus]
Length = 1400
Score = 201 bits (512), Expect = 2e-49
Identities = 104/182 (57%), Positives = 124/182 (68%), Gaps = 6/182 (3%)
Frame = +3
Query: 201 FTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDTHLG 380
FTKQP+IED GPRKIKS+ FTT SGAEI K AE+ VY+ L+ RKP G+LD +G
Sbjct: 11 FTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYK-GLYYDTTRKPIDGGLLDPRMG 69
Query: 381 TSYKIGQCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARVLLSEDD 560
+ K +CATC+ F DCPGHYGY+ LALPVF+VGYF IL IL+CICKSC+R+LL E
Sbjct: 70 PANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKL 129
Query: 561 RKLFLRRMRNPRAEVLQKRALFKSINDKC------KRVQRCPRCGDYNGTVKKLTSTLRI 722
K FLR+MRNP+ E L+K L K I KC + RC RCG NG+VKK S L I
Sbjct: 130 FKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSVKKAVSMLGI 189
Query: 723 TH 728
H
Sbjct: 190 LH 191
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 199 bits (507), Expect = 6e-49
Identities = 92/183 (50%), Positives = 127/183 (69%)
Frame = +3
Query: 183 PTVSINFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGI 362
P + TK+PF+ED G R+IKS+ F+ SG EI ++AE V+ ++ D KP P+G+
Sbjct: 4 PEEKLRCTKEPFVEDVGTRRIKSMRFSMFSGKEIRQSAETQVWNNRIYG-NDMKPVPNGL 62
Query: 363 LDTHLGTSYKIGQCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARV 542
LD +G + K G+CATC+G + +CPGH+GY+KL LPVF+VG+F NIL++L+ ICK C+R+
Sbjct: 63 LDPRMGAANKFGECATCHGSYHECPGHFGYLKLVLPVFNVGFFNNILDVLKSICKGCSRI 122
Query: 543 LLSEDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTVKKLTSTLRI 722
LL E D++ FL++MRNPR E L K AL K + DKCK + RCP CG NG KK L I
Sbjct: 123 LLHEKDQREFLKKMRNPRLEPLHKAALMKKVRDKCK-LSRCPSCGYINGVAKKGRPGLLI 181
Query: 723 THE 731
H+
Sbjct: 182 VHD 184
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Setaria italica]
Length = 1397
Score = 199 bits (506), Expect = 8e-49
Identities = 95/186 (51%), Positives = 135/186 (72%), Gaps = 3/186 (1%)
Frame = +3
Query: 183 PTVSINFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGI 362
P + TK+PFIED G R+IKS+ F+ +SG+EI K+AE+ V+ + ++ D KP P+G+
Sbjct: 4 PEEKLRCTKEPFIEDVGARRIKSIRFSVLSGSEIRKSAEVQVWNSRIYEH-DMKPVPNGL 62
Query: 363 LDTHLGTSYKIG---QCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSC 533
LD +G + K +C+TC+G F++CPGH+GY+KLALPVF+VG+F IL++L+CICK C
Sbjct: 63 LDMRMGLASKKDTELKCSTCHGPFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGC 122
Query: 534 ARVLLSEDDRKLFLRRMRNPRAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTVKKLTST 713
+RVLL+E DR+ FL++MRNPRA+ LQK A+ K + DKCK + CPRC NG VKK
Sbjct: 123 SRVLLAEKDRREFLKKMRNPRADALQKSAIMKKVRDKCK-LTCCPRCEYKNGVVKKGRVG 181
Query: 714 LRITHE 731
L + H+
Sbjct: 182 LIVIHD 187
>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
Length = 1395
Score = 197 bits (502), Expect = 2e-48
Identities = 94/183 (51%), Positives = 131/183 (71%), Gaps = 5/183 (2%)
Frame = +3
Query: 201 FTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDTHLG 380
FTK+P+IED GPRKIKS+ F+ +S +EI KAAE+ VY+ +L+ P +P G+LD +G
Sbjct: 5 FTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQ-ALYYDPKSRPIEGGLLDPRMG 63
Query: 381 TSYKIGQCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARVLLSEDD 560
+ K G+CATC+G F+DCPGHYGY+ LALPV++VGY IL+IL+CICKSC+R++L E
Sbjct: 64 PANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEKL 123
Query: 561 RKLFLRRMRNPRAEVLQKRALFKSINDKC-----KRVQRCPRCGDYNGTVKKLTSTLRIT 725
K +L+RMR+P+ + L+K + KSI KC + +C RCG NGTVKK + L I
Sbjct: 124 CKDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLGII 183
Query: 726 HEK 734
H++
Sbjct: 184 HDR 186
>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X1 [Citrus sinensis]
gi|568870034|ref|XP_006488217.1| PREDICTED: DNA-directed
RNA polymerase III subunit rpc1-like isoform X2 [Citrus
sinensis]
Length = 1404
Score = 195 bits (495), Expect = 2e-47
Identities = 97/185 (52%), Positives = 129/185 (69%), Gaps = 4/185 (2%)
Frame = +3
Query: 192 SINFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDT 371
SI FTKQP+IED GPRKI+S+ F+ MS +EI+KAAE+ VY+ + +R P G+LD
Sbjct: 11 SIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYS-SNRVPIEGGLLDP 69
Query: 372 HLGTSYKIGQCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARVLLS 551
+G + K CATC+G FS+CPGHYGY+ LALPV++VGY IL+IL+CICK C+R+LL
Sbjct: 70 RMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICKYCSRLLLE 129
Query: 552 EDDRKLFLRRMRNPRAEVLQKRALFKSINDKC----KRVQRCPRCGDYNGTVKKLTSTLR 719
E K +L++MRNP+ E L+K L KSI KC + +CPRCG NG VKK + L
Sbjct: 130 EKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLG 189
Query: 720 ITHEK 734
I H++
Sbjct: 190 IIHDR 194
>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1394
Score = 192 bits (489), Expect = 8e-47
Identities = 94/185 (50%), Positives = 126/185 (68%), Gaps = 5/185 (2%)
Frame = +3
Query: 195 INFTKQPFIEDAGPRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDTH 374
I +TKQP+IED GPR+IKS+ F+TMSG++I+KA+E V+ + ++K G+LDT
Sbjct: 8 IIYTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVH-LGQYYDANKKAIVGGLLDTR 66
Query: 375 LGTSYKIGQCATCNGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARVLLSE 554
+G K G C TC G F+DCPGH+GY+ L LPV++VGY IL+IL+CICKSC+RVL+ E
Sbjct: 67 MGAPNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRVLVDE 126
Query: 555 DDRKLFLRRMRNPRAEVLQKRALFKSINDKC-----KRVQRCPRCGDYNGTVKKLTSTLR 719
RK +L+RMRNPR E L+K L K I KC + +C RCG NG VKK S +
Sbjct: 127 KLRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKAGSVVG 186
Query: 720 ITHEK 734
I H++
Sbjct: 187 IIHDR 191
>ref|XP_002291242.1| DNA directed RNA polymerase III, largest subunit [Thalassiosira
pseudonana CCMP1335] gi|220973018|gb|EED91349.1| DNA
directed RNA polymerase III, largest subunit
[Thalassiosira pseudonana CCMP1335]
Length = 1422
Score = 191 bits (485), Expect = 2e-46
Identities = 87/170 (51%), Positives = 120/170 (70%), Gaps = 2/170 (1%)
Frame = +3
Query: 234 PRKIKSVAFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDTHLGTSYKIGQCATC 413
P++I + F +S +++ + AE V LF P R P +G+LD LG S K+ CATC
Sbjct: 35 PKQISHLQFGLLSPSDMQRLAEFQVTSRDLFTMPQRLPARNGVLDPRLGVSDKVSTCATC 94
Query: 414 NGKFSDCPGHYGYIKLALPVFHVGYFKNILNILQCICKSCARVLLSEDDRKLFLRRMRNP 593
K +DC GH+GYI+LALPVFH+GY K+ LN+LQCICKSC+RVLL++ +RK+ L++MRNP
Sbjct: 95 KLKLADCAGHFGYIRLALPVFHIGYLKHTLNLLQCICKSCSRVLLTDAERKMLLKKMRNP 154
Query: 594 RAEVLQKRALFKSINDKCKRVQRCPRCGDYNGTVKKL--TSTLRITHEKY 737
R +VL K ++FK + DKCK+ +CP C NGTVKK+ TL+I HE+Y
Sbjct: 155 RTDVLGKASVFKKVLDKCKKAHQCPYCHKPNGTVKKVHGAPTLKIIHERY 204