BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00025781
         (1653 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002519950.1| RNA polymerase beta chain (chloroplast) [Eph...  1075   0.0  
dbj|BAH11233.1| RNA polymerase beta chain (chloroplast) [Welwits...   882   0.0  
ref|YP_001876572.1| RNA polymerase beta subunit [Welwitschia mir...   881   0.0  
dbj|BAN16890.1| RNA polymerase beta chain (chloroplast) [Gnetum ...   841   0.0  
ref|YP_008082190.1| RNA polymerase beta subunit (chloroplast) [G...   841   0.0  
ref|YP_002519787.1| RNA polymerase beta chain [Gnetum parvifoliu...   831   0.0  
gb|ACP52193.1| RNA polymerase beta subunit [Larix occidentalis]       712   0.0  
ref|YP_004891746.1| RNA polymerase beta chain (chloroplast) [Pic...   711   0.0  
ref|YP_004891192.1| RNA polymerase beta chain (chloroplast) [Lar...   711   0.0  
ref|YP_003934484.1| RNA polymerase beta chain [Cathaya argyrophy...   709   0.0  
gb|AET46371.1| RNA polymerase beta subunit (chloroplast) [Pseudo...   709   0.0  
gb|AET45799.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   709   0.0  
ref|YP_002905075.1| RNA polymerase beta subunit [Picea sitchensi...   709   0.0  
ref|YP_008082826.1| RNA polymerase beta subunit (chloroplast) [P...   709   0.0  
ref|NP_817162.1| RNA polymerase beta subunit [Pinus koraiensis] ...   709   0.0  
gb|AET49321.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   709   0.0  
gb|AET47233.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   709   0.0  
ref|YP_004276227.1| RNA polymerase beta subunit [Pinus lambertia...   709   0.0  
ref|YP_004891424.1| RNA polymerase beta chain (chloroplast) [Pse...   709   0.0  
gb|ACV33047.1| RNA polymerase beta subunit [Pinus monticola]          709   0.0  

>ref|YP_002519950.1| RNA polymerase beta chain (chloroplast) [Ephedra equisetina]
            gi|220983551|dbj|BAH11318.1| RNA polymerase beta chain
            (chloroplast) [Ephedra equisetina]
          Length = 1100

 Score = 1075 bits (2780), Expect = 0.0
 Identities = 535/550 (97%), Positives = 537/550 (97%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL 181
            EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL
Sbjct: 464  EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL 523

Query: 182  QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATS 361
            QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQ+ALDSRILATS
Sbjct: 524  QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQVALDSRILATS 583

Query: 362  IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADG 541
            IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQ+PQVNQGNYVKRGQFMADG
Sbjct: 584  IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQKPQVNQGNYVKRGQFMADG 643

Query: 542  STTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAECE 721
            STTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAECE
Sbjct: 644  STTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAECE 703

Query: 722  ILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLLQDLF 901
            ILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLLQDLF
Sbjct: 704  ILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLLQDLF 763

Query: 902  CTPRTKETCLKANGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXXQTDPGEND 1081
            CTPRTKETCLKANGKGRVIDVNWIKLQTLWQDNLRKSHH             QTDPGEND
Sbjct: 764  CTPRTKETCLKANGKGRVIDVNWIKLQTLWQDNLRKSHHEDDDIEDDFEKNDQTDPGEND 823

Query: 1082 SEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMILNPLGVPSR 1261
            SEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMILNPLGVPSR
Sbjct: 824  SEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMILNPLGVPSR 883

Query: 1262 MNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTVNPWVFELE 1441
            MNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTVNPWVFELE
Sbjct: 884  MNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTVNPWVFELE 943

Query: 1442 HLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQPVQGKSKG 1621
            HLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQPVQGKSKG
Sbjct: 944  HLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQPVQGKSKG 1003

Query: 1622 GGQRLGEMEV 1651
            GGQRLGEMEV
Sbjct: 1004 GGQRLGEMEV 1013


>dbj|BAH11233.1| RNA polymerase beta chain (chloroplast) [Welwitschia mirabilis]
          Length = 1108

 Score =  882 bits (2279), Expect = 0.0
 Identities = 432/558 (77%), Positives = 483/558 (86%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL 181
            ++ ++SYLLP+ED++YRIAL N LAVD K+PEKKNTPTQYRQ+FLS+AWEQIHFRSILP 
Sbjct: 471  KEQLISYLLPSEDESYRIALGNFLAVDQKIPEKKNTPTQYRQEFLSIAWEQIHFRSILPF 530

Query: 182  QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATS 361
            QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVP LQPEKCIVGTGLE Q+ALDS  LA S
Sbjct: 531  QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPPLQPEKCIVGTGLESQVALDSGNLAIS 590

Query: 362  IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADG 541
             QEGRI+Y D++TI+SS    T +  L+ YQRSNSN L++Q+P +NQG Y+K+GQ +ADG
Sbjct: 591  KQEGRIKYIDAETIISSSKGSTTQIELQTYQRSNSNTLMYQKPHINQGKYIKKGQILADG 650

Query: 542  STTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAECE 721
            + T+GGE+CLGKNILVAYMPWQGYNFEDAILI+ERLIYE+I TSFHITRYET I   ECE
Sbjct: 651  AVTVGGEICLGKNILVAYMPWQGYNFEDAILISERLIYEDILTSFHITRYETTICTTECE 710

Query: 722  ILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLLQDLF 901
             LTK+IPQ++ Y LRHLDENG+VRVGSW+QPGDVLVGKLKPRS +E  RFPELRLLQDLF
Sbjct: 711  TLTKKIPQLDPYLLRHLDENGLVRVGSWVQPGDVLVGKLKPRSPEEFSRFPELRLLQDLF 770

Query: 902  CTPRTKETCLKANGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXXQT------ 1063
            CTP TKETCL+A GKG+VID+NWIKL+TLW+D+L K H               T      
Sbjct: 771  CTPPTKETCLRAGGKGQVIDLNWIKLETLWEDDLEKVHQENEEDDDTEDFYDDTIYEKVY 830

Query: 1064 --DPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
              D   +DSEKVHVY+LQKR+IQVGDKVAGRHGNKGIIS VL RQ+MP+LQNG  VDM+L
Sbjct: 831  PIDHVYSDSEKVHVYLLQKRQIQVGDKVAGRHGNKGIISVVLPRQDMPYLQNGVSVDMVL 890

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECLLGLAGTL NK YRIPPFDERYEQEASRKLVF+EL+KASEQT 
Sbjct: 891  NPLGVPSRMNVGQIFECLLGLAGTLTNKHYRIPPFDERYEQEASRKLVFSELYKASEQTA 950

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFELEHLGKTKIFDG+TGEI EQPVT+GKAYMMKLIHQV DKMHARSTGSYARITQQ
Sbjct: 951  NPWVFELEHLGKTKIFDGRTGEIFEQPVTIGKAYMMKLIHQVEDKMHARSTGSYARITQQ 1010

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            PVQGKSKGGGQRLGEMEV
Sbjct: 1011 PVQGKSKGGGQRLGEMEV 1028


>ref|YP_001876572.1| RNA polymerase beta subunit [Welwitschia mirabilis]
            gi|163311627|gb|ABY26785.1| RNA polymerase beta subunit
            [Welwitschia mirabilis]
          Length = 1108

 Score =  881 bits (2277), Expect = 0.0
 Identities = 431/558 (77%), Positives = 483/558 (86%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL 181
            ++ ++SYLLP+ED++YRIAL N LAVD K+PEKKNTPTQYRQ+FLS+AWEQIHFRSILP 
Sbjct: 471  KEQLISYLLPSEDESYRIALGNFLAVDQKIPEKKNTPTQYRQEFLSIAWEQIHFRSILPF 530

Query: 182  QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATS 361
            QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVP LQPEKCIVGTGLE Q+ALDS  LA S
Sbjct: 531  QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPPLQPEKCIVGTGLESQVALDSGNLAIS 590

Query: 362  IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADG 541
             QEGRI+Y D++TI+SS    T +  L+ YQRSNSN L++Q+P +NQG Y+K+GQ +ADG
Sbjct: 591  KQEGRIKYIDAETIISSSKGNTTQIELQTYQRSNSNTLMYQKPHINQGKYIKKGQILADG 650

Query: 542  STTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAECE 721
            + T+GGE+CLGKNILVAYMPWQGYNFEDAILI+ERLIYE+I TSFHITRYET I   ECE
Sbjct: 651  AVTVGGEICLGKNILVAYMPWQGYNFEDAILISERLIYEDILTSFHITRYETTICTTECE 710

Query: 722  ILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLLQDLF 901
             LTK+IPQ++ Y LRHLDENG+VRVGSW+QPGDVLVGKLKPRS +E  RFPELRLLQD+F
Sbjct: 711  TLTKKIPQLDPYLLRHLDENGLVRVGSWVQPGDVLVGKLKPRSPEEFSRFPELRLLQDIF 770

Query: 902  CTPRTKETCLKANGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXXQT------ 1063
            CTP TKETCL+A GKG+VID+NWIKL+TLW+D+L K H               T      
Sbjct: 771  CTPPTKETCLRAGGKGQVIDLNWIKLETLWEDDLEKVHQENEEDDDTEDFYDDTIYEKVY 830

Query: 1064 --DPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
              D   +DSEKVHVY+LQKR+IQVGDKVAGRHGNKGIIS VL RQ+MP+LQNG  VDM+L
Sbjct: 831  PIDHVYSDSEKVHVYLLQKRQIQVGDKVAGRHGNKGIISVVLPRQDMPYLQNGVSVDMVL 890

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECLLGLAGTL NK YRIPPFDERYEQEASRKLVF+EL+KASEQT 
Sbjct: 891  NPLGVPSRMNVGQIFECLLGLAGTLTNKHYRIPPFDERYEQEASRKLVFSELYKASEQTA 950

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFELEHLGKTKIFDG+TGEI EQPVT+GKAYMMKLIHQV DKMHARSTGSYARITQQ
Sbjct: 951  NPWVFELEHLGKTKIFDGRTGEIFEQPVTIGKAYMMKLIHQVEDKMHARSTGSYARITQQ 1010

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            PVQGKSKGGGQRLGEMEV
Sbjct: 1011 PVQGKSKGGGQRLGEMEV 1028


>dbj|BAN16890.1| RNA polymerase beta chain (chloroplast) [Gnetum ula]
          Length = 1110

 Score =  841 bits (2173), Expect = 0.0
 Identities = 416/554 (75%), Positives = 467/554 (84%), Gaps = 8/554 (1%)
 Frame = +2

Query: 14   VSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 193
            + YL P+ED  YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR  L LQYFS
Sbjct: 477  IVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRCFLTLQYFS 536

Query: 194  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 373
            +GVSLIPFLEHNDATRALMGSNMQRQAVP +QPEKCIVGTGLEGQ+ALDS  LA S QEG
Sbjct: 537  VGVSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEGQVALDSGALAISTQEG 596

Query: 374  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 553
            RI+Y D+ TIVS L   T +T L+IYQRSNSN L+HQ+  V+Q  YV++GQ +ADG  T+
Sbjct: 597  RIQYSDAATIVSVLKGNTTQTELQIYQRSNSNTLMHQKTHVSQAKYVRKGQILADGGATL 656

Query: 554  GGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAECEILTK 733
            GGE+CLGKNILVAYMPWQGYNFEDAILI+E LIY++IFTSFHITRYET I  AECE +T+
Sbjct: 657  GGEICLGKNILVAYMPWQGYNFEDAILISECLIYKDIFTSFHITRYETTICTAECEKMTR 716

Query: 734  EIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLLQDLFCTPR 913
            EIP++  YSLRHLD+NG+VRVGSW+QPGDVLVGKLKPRSS++  RFPELRLLQDLFCT  
Sbjct: 717  EIPRLATYSLRHLDKNGLVRVGSWVQPGDVLVGKLKPRSSEDFSRFPELRLLQDLFCTSP 776

Query: 914  TKETCLKANGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXXQTDPG------- 1072
             KETCL+ANGKGRVIDVNW KLQ   +D+L K H                +         
Sbjct: 777  IKETCLRANGKGRVIDVNWSKLQAFCKDDLEKGHQDDDTEDIYDEAEDALEKVYQLNNYN 836

Query: 1073 -ENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMILNPLG 1249
              +DSEKVHVY+L+KRKIQVGDKVAGRHGNKGI+S VLSRQ+MPFLQ+G  +DM+LNPLG
Sbjct: 837  LSSDSEKVHVYLLEKRKIQVGDKVAGRHGNKGIVSIVLSRQDMPFLQSGISLDMVLNPLG 896

Query: 1250 VPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTVNPWV 1429
            VPSRMNVGQIFECLLGLAGTLMNK YRIPPFDERYEQEASRKLVF EL+KASEQT NPWV
Sbjct: 897  VPSRMNVGQIFECLLGLAGTLMNKHYRIPPFDERYEQEASRKLVFYELYKASEQTANPWV 956

Query: 1430 FELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQPVQG 1609
            FELEHLGKT+IFDG+TGEI EQPVT G AY++KLIHQV DKMHARSTG+YARITQQPVQG
Sbjct: 957  FELEHLGKTQIFDGRTGEIFEQPVTTGNAYILKLIHQVNDKMHARSTGNYARITQQPVQG 1016

Query: 1610 KSKGGGQRLGEMEV 1651
            KSKGGGQRLGEMEV
Sbjct: 1017 KSKGGGQRLGEMEV 1030


>ref|YP_008082190.1| RNA polymerase beta subunit (chloroplast) [Gnetum montanum]
            gi|490345015|gb|AGL11035.1| RNA polymerase beta subunit
            (chloroplast) [Gnetum montanum]
          Length = 1109

 Score =  841 bits (2172), Expect = 0.0
 Identities = 415/554 (74%), Positives = 467/554 (84%), Gaps = 8/554 (1%)
 Frame = +2

Query: 14   VSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 193
            + YL P+ED  YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR  LPLQYFS
Sbjct: 476  IVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRCFLPLQYFS 535

Query: 194  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 373
            IGVSLIPFLEHNDATRALMGSNMQRQAVP +QPEKCIVGTGLEGQ+ALDS  LA S QEG
Sbjct: 536  IGVSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEGQVALDSGALAISTQEG 595

Query: 374  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 553
            RI+Y D+ TIVS L   T +T L+IYQRSNSN L+HQ+   +Q  YV++GQ +ADG+ T+
Sbjct: 596  RIQYSDAATIVSVLKGNTTQTELQIYQRSNSNTLMHQKTHASQAKYVRKGQILADGAATL 655

Query: 554  GGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAECEILTK 733
            GGE+CLGKNILVAYMPWQGYNFEDAILI+E LIY++IFTSFHITRYET I  AECE +T+
Sbjct: 656  GGEICLGKNILVAYMPWQGYNFEDAILISECLIYKDIFTSFHITRYETTICTAECEKMTR 715

Query: 734  EIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLLQDLFCTPR 913
            EIP++  YSLRHLD+NG+VRVGSW+QPGDVLVGKLKPRSS++  RFPELRLLQDLFCT  
Sbjct: 716  EIPRLATYSLRHLDKNGLVRVGSWVQPGDVLVGKLKPRSSEDFSRFPELRLLQDLFCTSP 775

Query: 914  TKETCLKANGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXXQTDPG------- 1072
             KETCL+ANGKGRVIDVNW KLQ   +D+L K H                +         
Sbjct: 776  IKETCLRANGKGRVIDVNWSKLQAFCKDDLEKGHQDDDTEDIYDEAEDALEKVYQLNNYN 835

Query: 1073 -ENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMILNPLG 1249
              +DSEKVHVY+L+KRKIQVGDKVAGRHGNKGI+S VLSRQ+MPFLQ+G  +DM+LNPL 
Sbjct: 836  LSSDSEKVHVYLLEKRKIQVGDKVAGRHGNKGIVSIVLSRQDMPFLQSGISLDMVLNPLS 895

Query: 1250 VPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTVNPWV 1429
            VPSRMNVGQIFECLLGLAGTLMNK YRIPPFDERYEQEASRKLVF EL+KASEQT NPW+
Sbjct: 896  VPSRMNVGQIFECLLGLAGTLMNKHYRIPPFDERYEQEASRKLVFYELYKASEQTANPWI 955

Query: 1430 FELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQPVQG 1609
            FELEHLGKT+IFDG+TGEI EQPVT G AY++KLIHQV DKMHARSTG+YARITQQPVQG
Sbjct: 956  FELEHLGKTQIFDGRTGEIFEQPVTTGNAYILKLIHQVNDKMHARSTGNYARITQQPVQG 1015

Query: 1610 KSKGGGQRLGEMEV 1651
            KSKGGGQRLGEMEV
Sbjct: 1016 KSKGGGQRLGEMEV 1029


>ref|YP_002519787.1| RNA polymerase beta chain [Gnetum parvifolium]
            gi|158513793|sp|A6BM50.1|RPOB_GNEPA RecName:
            Full=DNA-directed RNA polymerase subunit beta; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta; Short=RNA polymerase subunit beta
            gi|149941456|dbj|BAF64895.1| RNA polymerase beta subunit
            [Gnetum parvifolium] gi|220983530|dbj|BAH11298.1| RNA
            polymerase beta chain (chloroplast) [Gnetum parvifolium]
          Length = 1108

 Score =  831 bits (2147), Expect = 0.0
 Identities = 412/554 (74%), Positives = 465/554 (83%), Gaps = 8/554 (1%)
 Frame = +2

Query: 14   VSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 193
            + YL P+ED  YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR  LPLQYFS
Sbjct: 476  IVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRCFLPLQYFS 535

Query: 194  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 373
            IGVSLIPFLEHNDATRALMGSNMQRQAVP +QPEKCIVGTGLEGQ+ALDS  LA S QEG
Sbjct: 536  IGVSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEGQVALDSGALAISTQEG 595

Query: 374  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 553
            RI+Y D+ TIVS L   T +T L+IYQRSNSN L+HQ+   +Q  YV++GQ +ADG+  +
Sbjct: 596  RIQYSDAATIVSVLKGNTTQTELQIYQRSNSNTLMHQKTHASQAKYVRKGQILADGAAML 655

Query: 554  GGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAECEILTK 733
            GGE+CLGKNILVAYMPWQGYNFEDAILI+E LIY++IFTSFHITRYET I  AECE +T+
Sbjct: 656  GGEICLGKNILVAYMPWQGYNFEDAILISECLIYKDIFTSFHITRYETTICTAECEKMTR 715

Query: 734  EIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLLQDLFCTPR 913
            EIP++  YSLRHLD+NG+VRVGSW+QPGDVLVGKL+PRSS++  RFPELRLLQDLFCT  
Sbjct: 716  EIPRLATYSLRHLDKNGLVRVGSWVQPGDVLVGKLRPRSSEDFSRFPELRLLQDLFCTSP 775

Query: 914  TKETCLKANGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXXQTDPG------- 1072
             KETCL+ANGKGRVIDVNW KLQ   +D+L K H                +         
Sbjct: 776  IKETCLRANGKGRVIDVNWSKLQAFCKDDLEKGHQDDDTEDIYDEAEDALEKVYQLNNYN 835

Query: 1073 -ENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMILNPLG 1249
              +DSEKVHVY+L+KRKIQVGDKVAGRHGNKGI+S VLSRQ+MPFLQ+G  +DM+LNPL 
Sbjct: 836  LSSDSEKVHVYLLEKRKIQVGDKVAGRHGNKGIVSIVLSRQDMPFLQSGISLDMVLNPLS 895

Query: 1250 VPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTVNPWV 1429
            VPSRMNVGQIFECLLGLAGT MNK YRIPPFDERYEQEASRKLVF EL+KASEQT NPW+
Sbjct: 896  VPSRMNVGQIFECLLGLAGT-MNKHYRIPPFDERYEQEASRKLVFYELYKASEQTANPWI 954

Query: 1430 FELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQPVQG 1609
            FELEHLGKT+IFDG+TGEI EQPVT G AY++KLIHQV DKMHARSTG+YARITQQPVQG
Sbjct: 955  FELEHLGKTQIFDGRTGEIFEQPVTTGNAYILKLIHQVNDKMHARSTGNYARITQQPVQG 1014

Query: 1610 KSKGGGQRLGEMEV 1651
            KSKGGGQRLGEMEV
Sbjct: 1015 KSKGGGQRLGEMEV 1028


>gb|ACP52193.1| RNA polymerase beta subunit [Larix occidentalis]
          Length = 1076

 Score =  712 bits (1837), Expect = 0.0
 Identities = 363/558 (65%), Positives = 432/558 (77%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 467  EEHMV-YLLPGEDEDEYYRIATGNYLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 526  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 585

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 586  IATQEGRIEYIDATNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 645

Query: 536  DGSTTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAE 715
            DG+ T+GGEL LGKN+LVAYMPW+GYNFEDAILI+ERL+YE+I+TSFHI RY   I M  
Sbjct: 646  DGAATVGGELSLGKNVLVAYMPWEGYNFEDAILISERLVYEDIYTSFHIVRYRIEICMTS 705

Query: 716  --CEILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLL 889
               E +T+EIP ++A+SLRHLDENG+V +GSWI+ GDVLVGKL P++++E L  PE RLL
Sbjct: 706  QGPERITREIPHLDAHSLRHLDENGLVMLGSWIETGDVLVGKLTPQTTEESLCAPEGRLL 765

Query: 890  QDLFC--TPRTKETCLKA--NGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXX 1057
            Q +F       +E CL+A   G+GRVIDV WI                            
Sbjct: 766  QTIFGIEVSTARENCLRAPIGGRGRVIDVRWIN--------------------------- 798

Query: 1058 QTDPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
            + D   +++E VHVYI QKRKIQVGDKVAGRHGNKGIIS VL RQ+MP+LQNG PVDM+L
Sbjct: 799  RVDDSGDNAETVHVYISQKRKIQVGDKVAGRHGNKGIISIVLPRQDMPYLQNGIPVDMVL 858

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECL GLAG LMNK YRI PFDERYE+EASRKLVF EL+KASEQT 
Sbjct: 859  NPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDERYEREASRKLVFPELYKASEQTA 918

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFE +H GK ++ DG+TG++ EQPVT+GKAYM KL HQV DK+HARS+G YAR+TQQ
Sbjct: 919  NPWVFEPDHPGKHRLIDGRTGDVFEQPVTIGKAYMSKLSHQVDDKIHARSSGPYARVTQQ 978

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            P++GKSK GGQR+GEMEV
Sbjct: 979  PLRGKSKRGGQRVGEMEV 996


>ref|YP_004891746.1| RNA polymerase beta chain (chloroplast) [Picea morrisonicola]
            gi|307683667|dbj|BAJ19812.1| RNA polymerase beta chain
            [Picea morrisonicola] gi|347977527|dbj|BAK86484.1| RNA
            polymerase beta chain (chloroplast) [Picea morrisonicola]
          Length = 1076

 Score =  711 bits (1836), Expect = 0.0
 Identities = 363/558 (65%), Positives = 431/558 (77%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 467  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL QPEKCI GTGLEGQ ALDS  +A
Sbjct: 526  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFQPEKCIAGTGLEGQAALDSGSVA 585

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 586  IATQEGRIEYIDAVNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 645

Query: 536  DGSTTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAE 715
            DG+ T+GGEL LGKN+LVAYMPW+GYNFEDAILI+ERL+YE+I+TSFHI RY   I M  
Sbjct: 646  DGAATVGGELSLGKNVLVAYMPWEGYNFEDAILISERLVYEDIYTSFHIVRYRIEICMTS 705

Query: 716  --CEILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLL 889
               E +T+EIP ++A+SLRHLDENG+V +GSWI+ GDVLVGKL P++++E L  PE RLL
Sbjct: 706  QGPERITREIPHLDAHSLRHLDENGLVMLGSWIETGDVLVGKLTPQTTEESLCAPEGRLL 765

Query: 890  QDLFC--TPRTKETCLKA--NGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXX 1057
            Q +F       +E CL+    G+GRVIDV WI                            
Sbjct: 766  QTIFGIEVSTARENCLRTPIGGRGRVIDVRWIN--------------------------- 798

Query: 1058 QTDPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
            + D   +++E VHVYI QKRKIQVGDKVAGRHGNKGIIS VL RQ+MP+LQNG PVDM+L
Sbjct: 799  RVDDSGDNAETVHVYISQKRKIQVGDKVAGRHGNKGIISIVLPRQDMPYLQNGIPVDMVL 858

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECL GLAG LMNK YRI PFDERYE+EASRKLVF EL+KASEQT 
Sbjct: 859  NPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDERYEREASRKLVFPELYKASEQTA 918

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFE +H GK ++ DG+TG++ EQPVT+GKAYM KL HQV DK+HARS+G YAR+TQQ
Sbjct: 919  NPWVFEPDHPGKHRLIDGRTGDVFEQPVTIGKAYMSKLSHQVDDKIHARSSGPYARVTQQ 978

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            P++GKSK GGQR+GEMEV
Sbjct: 979  PLRGKSKRGGQRIGEMEV 996


>ref|YP_004891192.1| RNA polymerase beta chain (chloroplast) [Larix decidua]
            gi|307683573|dbj|BAJ19765.1| RNA polymerase beta chain
            [Larix decidua] gi|347977543|dbj|BAK86499.1| RNA
            polymerase beta chain (chloroplast) [Larix decidua]
          Length = 1076

 Score =  711 bits (1835), Expect = 0.0
 Identities = 363/558 (65%), Positives = 432/558 (77%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 467  EEHMV-YLLPGEDEDEYYRIATGNYLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 526  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 585

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 586  IATQEGRIEYIDATNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 645

Query: 536  DGSTTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAE 715
            DG+ T+GGEL LGKN+LVAYMPW+GYNFEDAILI+ERL+YE+I+TSFHI RY   I M  
Sbjct: 646  DGAATVGGELSLGKNVLVAYMPWEGYNFEDAILISERLVYEDIYTSFHIVRYRIEICMTS 705

Query: 716  --CEILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLL 889
               E +T+EIP ++A+SLRHLDENG+V +GSWI+ GDVLVGKL P++++E L  PE RLL
Sbjct: 706  QGPERITREIPHLDAHSLRHLDENGLVMLGSWIETGDVLVGKLTPQTTEESLCAPEGRLL 765

Query: 890  QDLFC--TPRTKETCLKA--NGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXX 1057
            Q +F       +E CL+A   G+GRVIDV WI                            
Sbjct: 766  QTIFGIEVSTARENCLRAPIGGRGRVIDVRWIN--------------------------- 798

Query: 1058 QTDPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
            + D   +++E VHVYI QKRKIQVGDKVAGRHGNKGIIS VL RQ+MP+LQNG PVDM+L
Sbjct: 799  RVDDSGDNAETVHVYISQKRKIQVGDKVAGRHGNKGIISIVLPRQDMPYLQNGIPVDMVL 858

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECL GLAG LMNK YRI PFDERYE+EASRKLVF EL+KASEQT 
Sbjct: 859  NPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDERYEREASRKLVFPELYKASEQTA 918

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFE +H GK ++ DG+TG++ EQPVT+GKAYM KL HQV DK+HARS+G YAR+TQQ
Sbjct: 919  NPWVFEPDHPGKHRLIDGRTGDVFEQPVTMGKAYMSKLSHQVDDKIHARSSGPYARVTQQ 978

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            P++GKSK GGQR+GEMEV
Sbjct: 979  PLRGKSKRGGQRVGEMEV 996


>ref|YP_003934484.1| RNA polymerase beta chain [Cathaya argyrophylla]
            gi|307683330|dbj|BAJ19637.1| RNA polymerase beta chain
            (chloroplast) [Cathaya argyrophylla]
          Length = 1076

 Score =  709 bits (1831), Expect = 0.0
 Identities = 363/558 (65%), Positives = 431/558 (77%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 467  EEHMV-YLLPGEDEDEYYRIATGNYLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            PLQYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 526  PLQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 585

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T L IY RSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 586  IATQEGRIEYIDAVNITSSVNGDTVRTKLVIYNRSNTNTCTHQKPQVRQGECVKKGQILA 645

Query: 536  DGSTTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAE 715
            DG+ T+GGEL LGKN+LVAYMPW+GYNFEDAILI+ERL+YE+I+TS HI RY   I M  
Sbjct: 646  DGAATVGGELSLGKNVLVAYMPWEGYNFEDAILISERLVYEDIYTSLHIVRYRIEICMTS 705

Query: 716  --CEILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLL 889
               E +T+EIP ++A+SLRHLDENGIV +GSWI+ GDVLVGKL P++++E L  PE RLL
Sbjct: 706  QGPERITREIPHLDAHSLRHLDENGIVMLGSWIETGDVLVGKLTPQTTEESLCAPEGRLL 765

Query: 890  QDLFC--TPRTKETCLKA--NGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXX 1057
            Q +F       +E CL+A   G+GRVIDV WI                            
Sbjct: 766  QTIFGIEVSTARENCLRAPIGGRGRVIDVRWIN--------------------------- 798

Query: 1058 QTDPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
            + D   +++E VHVYI QKRKIQVGDKVAGRHGNKGIIS VL RQ+MP+LQNG PVDM+L
Sbjct: 799  RVDDSGDNAETVHVYISQKRKIQVGDKVAGRHGNKGIISIVLPRQDMPYLQNGIPVDMVL 858

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECL GLAG LMNK YRI PFDERYE+EASRKLVF EL+KASEQT 
Sbjct: 859  NPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDERYEREASRKLVFPELYKASEQTA 918

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFE +H GK ++ DG+TG++ EQPVT+GKAYM KL HQV DK+HARS+G YAR+TQQ
Sbjct: 919  NPWVFEPDHPGKHRLIDGRTGDVFEQPVTIGKAYMSKLSHQVDDKIHARSSGPYARVTQQ 978

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            P++GKSK GGQR+GEMEV
Sbjct: 979  PLRGKSKRGGQRVGEMEV 996


>gb|AET46371.1| RNA polymerase beta subunit (chloroplast) [Pseudotsuga menziesii var.
            menziesii]
          Length = 1076

 Score =  709 bits (1830), Expect = 0.0
 Identities = 362/558 (64%), Positives = 431/558 (77%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 467  EEHMV-YLLPGEDEDEYYRIATGNYLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 526  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 585

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 586  IATQEGRIEYIDATNITSSVNGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 645

Query: 536  DGSTTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAE 715
            DG+ T+GGEL LGKN+LVAYMPW+GYNFEDAILI+ERLIYE+I+TSFHI RY   I M  
Sbjct: 646  DGAATVGGELSLGKNVLVAYMPWEGYNFEDAILISERLIYEDIYTSFHIVRYRIEICMTS 705

Query: 716  --CEILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLL 889
               E +T+EIP ++A+SLRHL ENG+V +GSWI+ GDVLVGKL P++++E L  PE RLL
Sbjct: 706  QGPERITREIPHLDAHSLRHLGENGLVMLGSWIETGDVLVGKLTPQTTEESLCAPEGRLL 765

Query: 890  QDLFC--TPRTKETCLKA--NGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXX 1057
            Q +F       +E CL+A   G+GRVIDV WI                            
Sbjct: 766  QTIFGIEVSTARENCLRAPIGGRGRVIDVRWIN--------------------------- 798

Query: 1058 QTDPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
            + D   +++E +HVYILQKRKIQVGDKVAGRHGNKGIIS VL RQ+MP+LQNG PVDM+L
Sbjct: 799  RVDDSGDNAETIHVYILQKRKIQVGDKVAGRHGNKGIISIVLPRQDMPYLQNGIPVDMVL 858

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECL GLAG LMNK YRI PFDERYE+EASRKLVF EL+KASEQT 
Sbjct: 859  NPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDERYEREASRKLVFPELYKASEQTA 918

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFE +H GK ++ DG+TG++ EQPVT+GKAYM KL HQV DK+HARS+G YAR+TQQ
Sbjct: 919  NPWVFEPDHPGKHRLIDGRTGDVFEQPVTIGKAYMSKLSHQVDDKIHARSSGPYARVTQQ 978

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            P++GKSK GGQR+GEMEV
Sbjct: 979  PLRGKSKRGGQRVGEMEV 996


>gb|AET45799.1| RNA polymerase beta subunit (chloroplast) [Pinus roxburghii]
          Length = 1075

 Score =  709 bits (1830), Expect = 0.0
 Identities = 361/558 (64%), Positives = 432/558 (77%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNE--DKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP E  D+ YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 466  EEHMV-YLLPGEYEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 525  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQ++QG +VK+GQ +A
Sbjct: 585  IATQEGRIEYIDAVNITSSVNGDTVRTESVIYQRSNTNTCTHQKPQIHQGEFVKKGQILA 644

Query: 536  DGSTTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAE 715
            DG+TT+GGEL LGKN+LVAYMPW+GYNFEDAILI+ERL+YE+I+TSFHI RY   I M  
Sbjct: 645  DGATTVGGELSLGKNVLVAYMPWEGYNFEDAILISERLVYEDIYTSFHIVRYRIEICMTS 704

Query: 716  --CEILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLL 889
               E +T+EIP ++A+SLRHLDENG+V +GSWI+ GDVLVGKL P++ +E L  PE RLL
Sbjct: 705  QGPERITREIPHLDAHSLRHLDENGLVMLGSWIETGDVLVGKLTPQTIEESLCTPEGRLL 764

Query: 890  QDLFC--TPRTKETCLKA--NGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXX 1057
            Q +F       +E CL+A   GKGRVIDV WI                            
Sbjct: 765  QTIFGIEVSTARENCLRAPIGGKGRVIDVRWIN--------------------------- 797

Query: 1058 QTDPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
            + D   +++E VHVYI QKRKIQVGDKVAGRHGNKGIIS VL RQ+MP+LQNG PVDM+L
Sbjct: 798  RVDDSGDNAETVHVYISQKRKIQVGDKVAGRHGNKGIISIVLPRQDMPYLQNGIPVDMVL 857

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECL GLAG LMNK YRI PFDE+YE+EASRKLVF EL+KASEQT 
Sbjct: 858  NPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKASEQTA 917

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFE +H GK ++ DG+TG++ EQPVT+GKAYM KL HQV +K+HARS+G YAR+TQQ
Sbjct: 918  NPWVFEPDHPGKHRLIDGRTGDVFEQPVTIGKAYMSKLSHQVDEKIHARSSGPYARVTQQ 977

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            P++GKSK GGQR+GEMEV
Sbjct: 978  PLRGKSKRGGQRIGEMEV 995


>ref|YP_002905075.1| RNA polymerase beta subunit [Picea sitchensis]
            gi|226875285|gb|ACO89024.1| RNA polymerase beta subunit
            [Picea sitchensis]
          Length = 1076

 Score =  709 bits (1830), Expect = 0.0
 Identities = 362/558 (64%), Positives = 430/558 (77%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 467  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL QPEKCI GTGLEGQ ALDS  +A
Sbjct: 526  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFQPEKCIAGTGLEGQAALDSGSVA 585

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 586  IATQEGRIEYIDAVNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 645

Query: 536  DGSTTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAE 715
            DG+ T+GGEL LGKN+LVAYMPW+GYNFEDAILI+ERL+YE+I+TSFHI RY   I M  
Sbjct: 646  DGAATVGGELSLGKNVLVAYMPWEGYNFEDAILISERLVYEDIYTSFHIVRYRIEICMTS 705

Query: 716  --CEILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLL 889
               E +T+EIP ++A+SLRHLDENG+V +GSWI+ GDVLVGKL P++++E L  PE RLL
Sbjct: 706  QGPERITREIPHLDAHSLRHLDENGLVMLGSWIETGDVLVGKLTPQTTEESLCAPEGRLL 765

Query: 890  QDLFC--TPRTKETCLKA--NGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXX 1057
            Q +F       +E CL+    G+GRVIDV WI                            
Sbjct: 766  QTIFGIEVSTARENCLRTPIGGRGRVIDVRWIN--------------------------- 798

Query: 1058 QTDPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
            + D   +++E VHVYI QKRKIQVGDKVAGRHGNKGIIS VL RQ+MP+LQNG PVDM+L
Sbjct: 799  RVDDSGDNAETVHVYISQKRKIQVGDKVAGRHGNKGIISIVLPRQDMPYLQNGIPVDMVL 858

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECL GLAG  MNK YRI PFDERYE+EASRKLVF EL+KASEQT 
Sbjct: 859  NPLGVPSRMNVGQIFECLPGLAGNSMNKHYRITPFDERYEREASRKLVFPELYKASEQTA 918

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFE +H GK ++ DG+TG++ EQPVT+GKAYM KL HQV DK+HARS+G YAR+TQQ
Sbjct: 919  NPWVFEPDHPGKHRLIDGRTGDVFEQPVTIGKAYMSKLSHQVDDKIHARSSGPYARVTQQ 978

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            P++GKSK GGQR+GEMEV
Sbjct: 979  PLRGKSKRGGQRIGEMEV 996


>ref|YP_008082826.1| RNA polymerase beta subunit (chloroplast) [Picea abies]
            gi|502524860|emb|CCW23110.1| RNA polymerase beta subunit
            (chloroplast) [Picea abies]
          Length = 1076

 Score =  709 bits (1829), Expect = 0.0
 Identities = 362/558 (64%), Positives = 430/558 (77%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 467  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL QPEKCI GTGLEGQ ALDS  +A
Sbjct: 526  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFQPEKCIAGTGLEGQAALDSGSVA 585

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 586  IATQEGRIEYIDAVNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 645

Query: 536  DGSTTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAE 715
            DG+ T+GGEL LGKN+LVAYMPW+GYNFEDAILI+ERL+YE+I+TSFHI RY   I M  
Sbjct: 646  DGAATVGGELSLGKNVLVAYMPWEGYNFEDAILISERLVYEDIYTSFHIVRYRIEICMTS 705

Query: 716  --CEILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLL 889
               E +T+EIP ++A+SLRHLDENG+V +GSWI+ GDVLVGKL P++++E L  PE RLL
Sbjct: 706  QGPERITREIPHLDAHSLRHLDENGLVMLGSWIETGDVLVGKLTPQTTEESLCAPEGRLL 765

Query: 890  QDLFC--TPRTKETCLKA--NGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXX 1057
            Q +F       +E CL+    G+GRVIDV WI                            
Sbjct: 766  QTIFGIEVSTARENCLRTPIGGRGRVIDVRWIN--------------------------- 798

Query: 1058 QTDPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
            + D   +++E VHVYI QKRKIQVGDKVAGRHGNKGIIS VL RQ+MP+LQNG PVDM+L
Sbjct: 799  RVDDSGDNAETVHVYISQKRKIQVGDKVAGRHGNKGIISIVLPRQDMPYLQNGIPVDMVL 858

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECL GLAG  MNK YRI PFDERYE+EASRKLVF EL+KASEQT 
Sbjct: 859  NPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDERYEREASRKLVFPELYKASEQTA 918

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFE +H GK ++ DG+TG++ EQPVT+GKAYM KL HQV DK+HARS+G YAR+TQQ
Sbjct: 919  NPWVFEPDHPGKHRLIDGRTGDVFEQPVTIGKAYMSKLSHQVDDKIHARSSGPYARVTQQ 978

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            P++GKSK GGQR+GEMEV
Sbjct: 979  PLRGKSKRGGQRIGEMEV 996


>ref|NP_817162.1| RNA polymerase beta subunit [Pinus koraiensis]
            gi|41017711|sp|Q85X54.1|RPOB_PINKO RecName:
            Full=DNA-directed RNA polymerase subunit beta; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta; Short=RNA polymerase subunit beta
            gi|29469681|gb|AAO74009.1| RNA polymerase beta subunit
            [Pinus koraiensis] gi|257042642|gb|ACV32912.1| RNA
            polymerase beta subunit [Pinus monticola]
            gi|257042727|gb|ACV32994.1| RNA polymerase beta subunit
            [Pinus monticola] gi|356997033|gb|AET44944.1| RNA
            polymerase beta subunit (chloroplast) [Pinus amamiana]
            gi|356998338|gb|AET46231.1| RNA polymerase beta subunit
            (chloroplast) [Pinus pumila]
          Length = 1075

 Score =  709 bits (1829), Expect = 0.0
 Identities = 361/558 (64%), Positives = 432/558 (77%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 466  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 525  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 585  IATQEGRIEYIDAVNITSSINGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 644

Query: 536  DGSTTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAE 715
            DG+TT+GGEL LGKN+LVAYMPW+GYNFEDAILI+ERL+YE+I+TSFHI RY   I M  
Sbjct: 645  DGATTVGGELSLGKNVLVAYMPWEGYNFEDAILISERLVYEDIYTSFHIVRYRIEICMTS 704

Query: 716  --CEILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLL 889
               E +T+EIP ++A+SLRHLDENG+V +GSWI+ GDVLVGKL P++++E L  PE RLL
Sbjct: 705  QGPERITREIPHLDAHSLRHLDENGLVMLGSWIETGDVLVGKLTPQTTEESLCTPEGRLL 764

Query: 890  QDLFC--TPRTKETCLKA--NGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXX 1057
            Q +F       +E+CL+A   GKGRVIDV WI                            
Sbjct: 765  QTIFGIEVSTARESCLRAPIGGKGRVIDVRWIN--------------------------- 797

Query: 1058 QTDPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
            + D   +++E VHVYI QKRKIQVGDKVAGRHGNKGIIS +L RQ+MP+LQNG PVDM+L
Sbjct: 798  RVDDSGDNAETVHVYISQKRKIQVGDKVAGRHGNKGIISIILPRQDMPYLQNGIPVDMVL 857

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECL GLAG LMNK YRI PFDE+YE+EASRKLVF EL+KASEQT 
Sbjct: 858  NPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKASEQTA 917

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFE +H GK ++ DG+TG + EQPVT+GKAYM KL HQV +K+HARS+G YAR+TQQ
Sbjct: 918  NPWVFEPDHPGKHRLIDGRTGAVFEQPVTIGKAYMSKLSHQVDEKIHARSSGPYARVTQQ 977

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            P++GKSK GGQR+GEMEV
Sbjct: 978  PLRGKSKRGGQRIGEMEV 995


>gb|AET49321.1| RNA polymerase beta subunit (chloroplast) [Pinus dalatensis]
          Length = 1075

 Score =  709 bits (1829), Expect = 0.0
 Identities = 361/558 (64%), Positives = 432/558 (77%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 466  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 525  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 585  IATQEGRIEYIDAVNITSSINGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 644

Query: 536  DGSTTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAE 715
            DG+TT+GGEL LGKN+LVAYMPW+GYNFEDAILI+ERL+YE+I+TSFHI RY   I M  
Sbjct: 645  DGATTVGGELSLGKNVLVAYMPWEGYNFEDAILISERLVYEDIYTSFHIVRYRIEICMTS 704

Query: 716  --CEILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLL 889
               E +T+EIP ++A+SLRHLDENG+V +GSWI+ GDVLVGKL P++++E L  PE RLL
Sbjct: 705  QGPERITREIPHLDAHSLRHLDENGLVMLGSWIETGDVLVGKLTPQTTEESLCTPEGRLL 764

Query: 890  QDLFC--TPRTKETCLKA--NGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXX 1057
            Q +F       +E+CL+A   GKGRVIDV WI                            
Sbjct: 765  QTIFGIEVSTARESCLRAPIGGKGRVIDVRWIN--------------------------- 797

Query: 1058 QTDPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
            + D   +++E VHVYI QKRKIQVGDKVAGRHGNKGIIS +L RQ+MP+LQNG PVDM+L
Sbjct: 798  RVDDSGDNAETVHVYISQKRKIQVGDKVAGRHGNKGIISIILPRQDMPYLQNGIPVDMVL 857

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECL GLAG LMNK YRI PFDE+YE+EASRKLVF EL+KASEQT 
Sbjct: 858  NPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKASEQTA 917

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFE +H GK ++ DG+TG + EQPVT+GKAYM KL HQV +K+HARS+G YAR+TQQ
Sbjct: 918  NPWVFEPDHPGKHRLIDGRTGAVFEQPVTIGKAYMSKLSHQVDEKIHARSSGPYARVTQQ 977

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            P++GKSK GGQR+GEMEV
Sbjct: 978  PLRGKSKRGGQRIGEMEV 995


>gb|AET47233.1| RNA polymerase beta subunit (chloroplast) [Pinus morrisonicola]
          Length = 1075

 Score =  709 bits (1829), Expect = 0.0
 Identities = 361/558 (64%), Positives = 432/558 (77%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 466  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 525  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 585  IATQEGRIEYIDAVNITSSINGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 644

Query: 536  DGSTTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAE 715
            DG+TT+GGEL LGKN+LVAYMPW+GYNFEDAILI+ERL+YE+I+TSFHI RY   I M  
Sbjct: 645  DGATTVGGELSLGKNVLVAYMPWEGYNFEDAILISERLVYEDIYTSFHIVRYRIEICMTS 704

Query: 716  --CEILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLL 889
               E +T+EIP ++A+SLRHLDENG+V +GSWI+ GDVLVGKL P++++E L  PE RLL
Sbjct: 705  QGPERITREIPHLDAHSLRHLDENGLVMLGSWIETGDVLVGKLTPQTTEESLCTPEGRLL 764

Query: 890  QDLFC--TPRTKETCLKA--NGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXX 1057
            Q +F       +E+CL+A   GKGRVIDV WI                            
Sbjct: 765  QTIFGIEVSTARESCLRAPIGGKGRVIDVRWIN--------------------------- 797

Query: 1058 QTDPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
            + D   +++E VHVYI QKRKIQVGDKVAGRHGNKGIIS +L RQ+MP+LQNG PVDM+L
Sbjct: 798  RVDDSGDNAETVHVYISQKRKIQVGDKVAGRHGNKGIISIILPRQDMPYLQNGIPVDMVL 857

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECL GLAG LMNK YRI PFDE+YE+EASRKLVF EL+KASEQT 
Sbjct: 858  NPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKASEQTA 917

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFE +H GK ++ DG+TG + EQPVT+GKAYM KL HQV +K+HARS+G YAR+TQQ
Sbjct: 918  NPWVFEPDHPGKHRLIDGRTGAVFEQPVTIGKAYMSKLSHQVDEKIHARSSGPYARVTQQ 977

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            P++GKSK GGQR+GEMEV
Sbjct: 978  PLRGKSKRGGQRIGEMEV 995


>ref|YP_004276227.1| RNA polymerase beta subunit [Pinus lambertiana]
            gi|323514204|gb|ADX89751.1| RNA polymerase beta subunit
            [Pinus lambertiana]
          Length = 1075

 Score =  709 bits (1829), Expect = 0.0
 Identities = 361/558 (64%), Positives = 432/558 (77%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 466  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 525  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 585  IATQEGRIEYIDAVNITSSINGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 644

Query: 536  DGSTTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAE 715
            DG+TT+GGEL LGKN+LVAYMPW+GYNFEDAILI+ERL+YE+I+TSFHI RY   I M  
Sbjct: 645  DGATTVGGELSLGKNVLVAYMPWEGYNFEDAILISERLVYEDIYTSFHIVRYRIEICMTS 704

Query: 716  --CEILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLL 889
               E +T+EIP ++A+SLRHLDENG+V +GSWI+ GDVLVGKL P++++E L  PE RLL
Sbjct: 705  QGPERITREIPHLDAHSLRHLDENGLVMLGSWIETGDVLVGKLTPQTTEESLCTPEGRLL 764

Query: 890  QDLFC--TPRTKETCLKA--NGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXX 1057
            Q +F       +E+CL+A   GKGRVIDV WI                            
Sbjct: 765  QTIFGIEVSTARESCLRAPIGGKGRVIDVRWIN--------------------------- 797

Query: 1058 QTDPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
            + D   +++E VHVYI QKRKIQVGDKVAGRHGNKGIIS +L RQ+MP+LQNG PVDM+L
Sbjct: 798  RVDDSGDNAETVHVYISQKRKIQVGDKVAGRHGNKGIISIILPRQDMPYLQNGIPVDMVL 857

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECL GLAG LMNK YRI PFDE+YE+EASRKLVF EL+KASEQT 
Sbjct: 858  NPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKASEQTA 917

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFE +H GK ++ DG+TG + EQPVT+GKAYM KL HQV +K+HARS+G YAR+TQQ
Sbjct: 918  NPWVFEPDHPGKHRLIDGRTGAVFEQPVTIGKAYMSKLSHQVDEKIHARSSGPYARVTQQ 977

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            P++GKSK GGQR+GEMEV
Sbjct: 978  PLRGKSKRGGQRIGEMEV 995


>ref|YP_004891424.1| RNA polymerase beta chain (chloroplast) [Pseudotsuga sinensis var.
            wilsoniana] gi|307683479|dbj|BAJ19718.1| RNA polymerase
            beta chain [Pseudotsuga sinensis var. wilsoniana]
            gi|347977642|dbj|BAK86597.1| RNA polymerase beta chain
            [Pseudotsuga sinensis var. wilsoniana]
          Length = 1076

 Score =  709 bits (1829), Expect = 0.0
 Identities = 361/558 (64%), Positives = 431/558 (77%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 467  EEHMV-YLLPGEDEDEYYRIATGNYLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 526  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 585

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 586  IATQEGRIEYIDATNITSSVNGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 645

Query: 536  DGSTTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAE 715
            DG+ T+GGEL LGKN+LVAYMPW+GYNFEDAILI+ERLIYE+I+TSFHI RY   I M  
Sbjct: 646  DGAATVGGELSLGKNVLVAYMPWEGYNFEDAILISERLIYEDIYTSFHIVRYRIEICMTS 705

Query: 716  --CEILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLL 889
               E +T+EIP ++A+SLRHL ENG+V +GSWI+ GDVLVGKL P++++E L  PE RLL
Sbjct: 706  QGPERITREIPHLDAHSLRHLGENGLVMLGSWIETGDVLVGKLTPQTTEESLCAPEGRLL 765

Query: 890  QDLFC--TPRTKETCLKA--NGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXX 1057
            Q +F       +E CL+A   G+GRVIDV WI                            
Sbjct: 766  QTIFGIEVSTARENCLRAPIGGRGRVIDVRWIN--------------------------- 798

Query: 1058 QTDPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
            + D   +++E +HVY+LQKRKIQVGDKVAGRHGNKGIIS VL RQ+MP+LQNG PVDM+L
Sbjct: 799  RVDDSGDNAETIHVYVLQKRKIQVGDKVAGRHGNKGIISIVLPRQDMPYLQNGIPVDMVL 858

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECL GLAG LMNK YRI PFDERYE+EASRKLVF EL+KASEQT 
Sbjct: 859  NPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDERYEREASRKLVFPELYKASEQTA 918

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFE +H GK ++ DG+TG++ EQPVT+GKAYM KL HQV DK+HARS+G YAR+TQQ
Sbjct: 919  NPWVFEPDHPGKHRLIDGRTGDVFEQPVTIGKAYMSKLSHQVDDKIHARSSGPYARVTQQ 978

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            P++GKSK GGQR+GEMEV
Sbjct: 979  PLRGKSKRGGQRVGEMEV 996


>gb|ACV33047.1| RNA polymerase beta subunit [Pinus monticola]
          Length = 1075

 Score =  709 bits (1829), Expect = 0.0
 Identities = 361/558 (64%), Positives = 432/558 (77%), Gaps = 8/558 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 466  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 525  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 585  IATQEGRIEYIDAVNITSSINGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 644

Query: 536  DGSTTIGGELCLGKNILVAYMPWQGYNFEDAILINERLIYEEIFTSFHITRYETMIYMAE 715
            DG+TT+GGEL LGKN+LVAYMPW+GYNFEDAILI+ERL+YE+I+TSFHI RY   I M  
Sbjct: 645  DGATTVGGELSLGKNVLVAYMPWEGYNFEDAILISERLVYEDIYTSFHIVRYRIEICMTS 704

Query: 716  --CEILTKEIPQIEAYSLRHLDENGIVRVGSWIQPGDVLVGKLKPRSSQEVLRFPELRLL 889
               E +T+EIP ++A+SLRHLDENG+V +GSWI+ GDVLVGKL P++++E L  PE RLL
Sbjct: 705  QGPERITREIPHLDAHSLRHLDENGLVMLGSWIETGDVLVGKLTPQTTEESLCTPEGRLL 764

Query: 890  QDLFC--TPRTKETCLKA--NGKGRVIDVNWIKLQTLWQDNLRKSHHXXXXXXXXXXXXX 1057
            Q +F       +E+CL+A   GKGRVIDV WI                            
Sbjct: 765  QTIFGIEVSTARESCLRAPIGGKGRVIDVRWIN--------------------------- 797

Query: 1058 QTDPGENDSEKVHVYILQKRKIQVGDKVAGRHGNKGIISKVLSRQEMPFLQNGKPVDMIL 1237
            + D   +++E VHVYI QKRKIQVGDKVAGRHGNKGIIS +L RQ+MP+LQNG PVDM+L
Sbjct: 798  RVDDSGDNAETVHVYISQKRKIQVGDKVAGRHGNKGIISIILPRQDMPYLQNGIPVDMVL 857

Query: 1238 NPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKASEQTV 1417
            NPLGVPSRMNVGQIFECL GLAG LMNK YRI PFDE+YE+EASRKLVF EL+KASEQT 
Sbjct: 858  NPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKASEQTA 917

Query: 1418 NPWVFELEHLGKTKIFDGKTGEILEQPVTVGKAYMMKLIHQVYDKMHARSTGSYARITQQ 1597
            NPWVFE +H GK ++ DG+TG + EQPVT+GKAYM KL HQV +K+HARS+G YAR+TQQ
Sbjct: 918  NPWVFEPDHPGKHRLIDGRTGAVFEQPVTIGKAYMSKLSHQVDEKIHARSSGPYARVTQQ 977

Query: 1598 PVQGKSKGGGQRLGEMEV 1651
            P++GKSK GGQR+GEMEV
Sbjct: 978  PLRGKSKRGGQRIGEMEV 995