BLASTX nr result

ID: Ephedra27_contig00025547 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00025547
         (585 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ91386.1| predicted protein [Hordeum vulgare subsp. vulgare]     57   3e-06

>dbj|BAJ91386.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 408

 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
 Frame = -2

Query: 497 WKVHFSRYVPRPFALSSFEGNRVSRCKKRS-----GTWXXXXXXXXXXXXXAGNKDCK-- 339
           W+V F+RY   P   +S       RC   +     G+W             + +      
Sbjct: 30  WEVEFARYAAPPLRDTSTPPPPGVRCATSATDCHPGSWLPVATPAAVRVSRSSHPSAAPV 89

Query: 338 ISVNIHGKLYEAHLASRVKFTWTQEHSHADCISLATPILFVSFCQKSAHNVPKSRKFAMR 159
           ++V++ G ++E H  S + F+W Q      C    + ++FVSF  KS     + +KFA+R
Sbjct: 90  LTVSVVGVVFEEHFVSILNFSWPQFTCGGQCPGSGSRVVFVSFVDKS----KQIQKFALR 145

Query: 158 FHSTHDVGAFLSRTQECMAGTSGV 87
           F    DV +FL+  +EC+  T  +
Sbjct: 146 FPQLSDVESFLNCVKECLGDTMDI 169


Top