BLASTX nr result
ID: Ephedra27_contig00025041
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra27_contig00025041 (1304 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 395 e-107 ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 391 e-106 gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe... 388 e-105 emb|CBI28010.3| unnamed protein product [Vitis vinifera] 368 3e-99 ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 368 3e-99 ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 365 3e-98 ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 364 5e-98 ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 361 3e-97 ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 361 3e-97 ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 359 2e-96 ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 358 2e-96 ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 357 6e-96 ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 355 2e-95 ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 355 2e-95 ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Caps... 351 4e-94 ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme... 351 4e-94 ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 350 7e-94 ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 348 4e-93 ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 347 6e-93 ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Ar... 346 1e-92 >ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda] gi|548857326|gb|ERN15132.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda] Length = 988 Score = 395 bits (1015), Expect = e-107 Identities = 217/462 (46%), Positives = 292/462 (63%), Gaps = 33/462 (7%) Frame = -2 Query: 1297 NLEKEK--FHWLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSF 1124 NL + K F +A++GI +G R+Y FFV+K+ K EK+ + N T KCYFVC+ S Sbjct: 253 NLSRSKNIFRRIAKDGILVGLRRYHFFVFKDGGKEEKRKNAN----TTGVKCYFVCMKSD 308 Query: 1123 SIANKNMSRGMSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRF 944 + ++ + +S +QEAR FM +H V L KYMARFSLILSKT L+ DL V + Sbjct: 309 AESDMHTPYILSNKTIQEARSMFMDVHTVPNLAKYMARFSLILSKTIKLEVDLGSVNIER 368 Query: 943 EKDIECIDENGNAARDINGEVMIHTDGTGFISEDLAEK----------IQRSKNPSC--- 803 D C+D + D NG+ +IHTDGTGFISEDL K +++ K +C Sbjct: 369 INDKPCLDNHNEIVYDQNGQCLIHTDGTGFISEDLMSKFSKNIFKERYLKQKKVETCLNG 428 Query: 802 -----------EV------LPLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVE 674 E+ L LL Q RLFY G A+KGT+L+NK LP NTI +R SMVKVE Sbjct: 429 MELNAKSVLDEEIKYVSGDLHLLIQFRLFYDGCAVKGTVLVNKLLPPNTIQVRPSMVKVE 488 Query: 673 RDENYVCSPAVDSLEICNIGQKHK-AYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIK 497 RD ++ P+ +S E+ + + A LS+ LI LL++GGVP S F L AL+D+ Sbjct: 489 RDTDFSRLPSFNSFEMVGTSNRPRGAALSRYLITLLSHGGVPKSCFMFLIQAALDDVQNV 548 Query: 496 CRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVCL 317 ++ A + Q + D+ V RM+ G+P+ EP+LQ RL + + K +++GKV L Sbjct: 549 RYSKKLALTAAVKYQEISDNLLVARMIFCGLPLEEPYLQHRLSILMKEERKGLKEGKVLL 608 Query: 316 DNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEE 137 NSYY+MGTADP+G+LK NEVCIILDHGQ+SG VLVYR+PG HFGD+H++ ATY++++ E Sbjct: 609 PNSYYLMGTADPTGKLKGNEVCIILDHGQISGKVLVYRHPGLHFGDIHVFTATYIEDLVE 668 Query: 136 IVGDAKFGIFFSTQGERSGADEIAGGDFDGDLYWVCINKTVL 11 IVG+AKF IFFSTQG RS ADEIA GDFDGD+YW+ N +L Sbjct: 669 IVGNAKFAIFFSTQGPRSAADEIANGDFDGDMYWISTNPELL 710 >ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum tuberosum] Length = 911 Score = 391 bits (1005), Expect = e-106 Identities = 217/451 (48%), Positives = 281/451 (62%), Gaps = 28/451 (6%) Frame = -2 Query: 1270 LAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGM 1091 + + GI +G R+Y FFVYK+ DK +KK + T S KCYFV S N S Sbjct: 287 IVEEGILVGLRRYRFFVYKD-DKEKKKSPAMMKKKTASLKCYFVRFESIETCNDGGSYVF 345 Query: 1090 SRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENG 911 S + +ARCQFMH+H V+ + KY AR SLILSKT L +L+ VT+ +DI C DENG Sbjct: 346 STKRISQARCQFMHVHMVSNMAKYAARLSLILSKTIKLQVNLASVTIERIEDILCRDENG 405 Query: 910 NAARDINGEVMIHTDGTGFISEDLAE-------KIQRSKNPSCEVL-------------- 794 +D +GE IHTDGTGFISEDLA K + K+ + E Sbjct: 406 CIIKDEDGEPRIHTDGTGFISEDLAMHCPKDFVKAEYIKDENYENFVDIVDLDAERRESV 465 Query: 793 ------PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSL 632 PLL Q RLF+ G A+KGT L+N+K+ I IR SMVKVE D P DSL Sbjct: 466 SWNREPPLLMQCRLFFNGCAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPAISSIPTFDSL 525 Query: 631 EICNIGQK-HKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQN 455 EI I + +KAYLS+ LI+LL+YGGV +F L ALE+ + A K++ Sbjct: 526 EIVAISHRPNKAYLSKNLISLLSYGGVQKEYFMELLGSALEETKQVYLRKRAALKVVINY 585 Query: 454 QGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTADPSG 275 + +DDD RM+S+GIP+NEP L+ RL + +R GK+ + +S+Y+MGTADP+G Sbjct: 586 REMDDDCLTARMISSGIPLNEPHLRARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTG 645 Query: 274 RLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQ 95 L+ NEVC+ILD+GQ+SG VLVYRNPG HFGDVH+ KA YV+E+ ++VGDAK+GIFFST+ Sbjct: 646 VLESNEVCVILDNGQISGRVLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTK 705 Query: 94 GERSGADEIAGGDFDGDLYWVCINKTVLKDY 2 G RS A EIA GDFDGD+YWV IN+ V+ Y Sbjct: 706 GPRSAATEIANGDFDGDMYWVSINRKVVDSY 736 >gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica] Length = 798 Score = 388 bits (997), Expect = e-105 Identities = 211/428 (49%), Positives = 281/428 (65%), Gaps = 7/428 (1%) Frame = -2 Query: 1270 LAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVS-TKCYFVCITSFSIANKNMSRG 1094 +A+ GI +G R+Y FFV+K+ +EKK +NPT S KCYF+C+ S + +++ Sbjct: 96 VAREGILVGLRRYQFFVFKDGGNKEKK-----KNPTSSPVKCYFICVGSNAAIDRSEDYK 150 Query: 1093 MSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDEN 914 S + E RC FMH H V+++ YMARFSLILSKT L+ D S V V D C+DE+ Sbjct: 151 FSNRKIHETRCIFMHAHTVSSVSNYMARFSLILSKTESLEVDWSLVKVEDIDDEYCLDES 210 Query: 913 GNAARDINGEVMIHTDGTGFISEDLA-----EKIQRSKNPSCEVLPLLSQIRLFYKGFAI 749 GN D +G+ +IHTDGTGFISEDLA + ++R + PLL Q RLFYKG A+ Sbjct: 211 GNRI-DRDGKPLIHTDGTGFISEDLALLCPKDLLKRDYISKEYIEPLLLQFRLFYKGRAV 269 Query: 748 KGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIGQKHK-AYLSQTLIAL 572 KGT L+NK LP TI IR SMVKVE D V+SLEI + + H+ + S+ LIAL Sbjct: 270 KGTFLINKTLPPKTIQIRPSMVKVETDPMISDDQTVNSLEIVTVSKSHRNTFFSRHLIAL 329 Query: 571 LNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNE 392 L +GGVP +F+ L + LED A+K+ + +DDDY ++M+ +GIP+ E Sbjct: 330 LCHGGVPKEYFRELLMKDLEDTRGVFCSRRAAFKVAYNHGEIDDDYNSVKMILSGIPLEE 389 Query: 391 PFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVL 212 +LQ RL + K+++KGK+C SY +MGTADP+G L+ +EVCIILD GQ+SG VL Sbjct: 390 SYLQYRLSILKKEENKSLQKGKICSPQSYMLMGTADPTGILERDEVCIILDSGQMSGQVL 449 Query: 211 VYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLYWV 32 VYR+PG HFGD+HL KA YVKE+E +VG+AK+ IFFS +G RS ADE+ GGDFDGDLYWV Sbjct: 450 VYRHPGLHFGDIHLLKARYVKELEYVVGNAKYAIFFSCKGPRSVADEMGGGDFDGDLYWV 509 Query: 31 CINKTVLK 8 N +L+ Sbjct: 510 SRNPQLLE 517 >emb|CBI28010.3| unnamed protein product [Vitis vinifera] Length = 929 Score = 368 bits (945), Expect = 3e-99 Identities = 210/433 (48%), Positives = 279/433 (64%), Gaps = 9/433 (2%) Frame = -2 Query: 1279 FHWLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMS 1100 ++ +A+ GI++G R+Y FFV+K+ K EKK +NPT S KCYFV + S +++ K Sbjct: 235 YNKIAREGIFVGLRQYRFFVFKDGGKEEKK-----KNPTSSVKCYFVFMESSALSGKT-- 287 Query: 1099 RGMSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECID 920 V EARC FMH H V+++ KYMARFSLILSKT LD DLS V ++ D D Sbjct: 288 -------VHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRD 340 Query: 919 ENGNAARDINGEVMIHTDGTGFISEDLAEKIQRSKNPSCEVL--------PLLSQIRLFY 764 E+G+ D + + +I TDGTGFISEDLA R N C PLL Q RLF Sbjct: 341 EDGHVVYDEDWKPLILTDGTGFISEDLA---LRCPNNLCRGKYMNNGNSDPLLIQCRLFN 397 Query: 763 KGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG-QKHKAYLSQ 587 G A+KGTLLLN+KLP TI IR SM+KVE D + V+S+EI Q ++YLS+ Sbjct: 398 NGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSK 457 Query: 586 TLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAG 407 LIALL+YGGVP+ +F L ALED + ++A + G DD V RM+ +G Sbjct: 458 YLIALLSYGGVPNEYFMNLLKDALEDAP-SVQSSKRAALRVSLRFGEMDDSIVTRMILSG 516 Query: 406 IPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTADPSGRLKPNEVCIILDHGQV 227 IP++EPFL L + + K +R GK+ +++ +Y+MGTADP+G LK +EVCIILDHGQV Sbjct: 517 IPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQV 576 Query: 226 SGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDG 47 G VLVY++PG HFGD+H+ ATYV+ +EE VG+AK+ IFF +G RS ADE+A DFDG Sbjct: 577 QGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDG 636 Query: 46 DLYWVCINKTVLK 8 D+YWV N+ +L+ Sbjct: 637 DMYWVSRNQQLLQ 649 >ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis vinifera] Length = 943 Score = 368 bits (945), Expect = 3e-99 Identities = 209/436 (47%), Positives = 282/436 (64%), Gaps = 12/436 (2%) Frame = -2 Query: 1279 FHWLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMS 1100 ++ +A+ GI++G R+Y FFV+K+ K EKK +NPT S KCYFV + S +++ K Sbjct: 243 YNKIAREGIFVGLRQYRFFVFKDGGKEEKK-----KNPTSSVKCYFVFMESSALSGKT-- 295 Query: 1099 RGMSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECID 920 V EARC FMH H V+++ KYMARFSLILSKT LD DLS V ++ D D Sbjct: 296 -------VHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRD 348 Query: 919 ENGNAARDINGEVMIHTDGTGFISEDLAEKIQRS-------KNPSCEVL----PLLSQIR 773 E+G+ D + + +I TDGTGFISEDLA + + N + +V PLL Q R Sbjct: 349 EDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSDVCDSRYPLLIQCR 408 Query: 772 LFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG-QKHKAY 596 LF G A+KGTLLLN+KLP TI IR SM+KVE D + V+S+EI Q ++Y Sbjct: 409 LFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSY 468 Query: 595 LSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRML 416 LS+ LIALL+YGGVP+ +F L ALED + ++A + G DD V RM+ Sbjct: 469 LSKYLIALLSYGGVPNEYFMNLLKDALEDAP-SVQSSKRAALRVSLRFGEMDDSIVTRMI 527 Query: 415 SAGIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTADPSGRLKPNEVCIILDH 236 +GIP++EPFL L + + K +R GK+ +++ +Y+MGTADP+G LK +EVCIILDH Sbjct: 528 LSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDH 587 Query: 235 GQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGD 56 GQV G VLVY++PG HFGD+H+ ATYV+ +EE VG+AK+ IFF +G RS ADE+A D Sbjct: 588 GQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSD 647 Query: 55 FDGDLYWVCINKTVLK 8 FDGD+YWV N+ +L+ Sbjct: 648 FDGDMYWVSRNQQLLQ 663 >ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum] gi|557110064|gb|ESQ50361.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum] Length = 988 Score = 365 bits (936), Expect = 3e-98 Identities = 204/447 (45%), Positives = 278/447 (62%), Gaps = 14/447 (3%) Frame = -2 Query: 1300 SNLEKEKFHWLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFS 1121 SN + +A+NGI +G R+Y FFV+K++ K EKK K T KCYF+ S + Sbjct: 272 SNDRYSAYKRIAKNGIMVGLRRYQFFVFKDVGKAEKK----KDFSTNGVKCYFIRTDSTA 327 Query: 1120 IANKNMSRGMSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFE 941 + + S + EAR FMH+H + +L KYMARFSLILSKT L+ D++ +T + Sbjct: 328 ANDMGKAYIFSGKTINEARMHFMHVHTLPSLAKYMARFSLILSKTKKLEVDMTGITYQEI 387 Query: 940 KDIECIDENGNAARDINGEVMIHTDGTGFISEDLAE---------KIQRSKN--PSC-EV 797 K+I C D+N N D N E +H+DGTG+ISEDLA K KN SC + Sbjct: 388 KEIHCHDQNNNVVLDKNKEPRMHSDGTGYISEDLARMCPVNIFKGKCLSKKNIQESCGQD 447 Query: 796 LPLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNI 617 PLL Q R+FY G A+KGT LLNKKLPD T+ +R SM+KV +D +SLE+ Sbjct: 448 PPLLIQFRMFYDGNAVKGTFLLNKKLPDRTVQVRPSMIKVSKDRALSNFSTFNSLEVVTT 507 Query: 616 GQKHK-AYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDD 440 K LS+ L+ALL+YGGVP+ FF L +E+ ++ A K N G D Sbjct: 508 SNPPKRTKLSRNLVALLSYGGVPNEFFLDLLLNTMEETKTIFNNKRAALKAAL-NHGDMD 566 Query: 439 DYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKN-IRKGKVCLDNSYYVMGTADPSGRLKP 263 D +M+ GIP++EP L+ RL L+N KN ++ G++ + SYY+MGT DP+G LK Sbjct: 567 DQNAAQMILVGIPLDEPHLKDRL-SILSNIEKNDLKAGRLPVTESYYLMGTVDPTGELKE 625 Query: 262 NEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERS 83 +EVC+IL+ GQ+SGDVLVYRNPG HFGD+H+ KATYVK +EE VG++K+ +FF +G RS Sbjct: 626 DEVCVILESGQISGDVLVYRNPGVHFGDIHVLKATYVKALEEYVGNSKYAVFFPQKGPRS 685 Query: 82 GADEIAGGDFDGDLYWVCINKTVLKDY 2 DEIAGGDFDGD+Y++ N +L+ + Sbjct: 686 LGDEIAGGDFDGDMYFISRNPELLEQF 712 >ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum lycopersicum] Length = 1011 Score = 364 bits (934), Expect = 5e-98 Identities = 205/433 (47%), Positives = 264/433 (60%), Gaps = 26/433 (6%) Frame = -2 Query: 1222 VYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGMSRNPVQEARCQFMHIH 1043 VYK+ DK KK + T S KCYFV S N S S + +ARC+FMH+H Sbjct: 303 VYKD-DKERKKSPAMMKTKTASLKCYFVRFESIGTCNDGESYVFSTKTISQARCKFMHVH 361 Query: 1042 NVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGNAARDINGEVMIHTDG 863 V+ + KY AR SLILSKT L DL VT+ +DI C DENG +D +GE IHTDG Sbjct: 362 MVSNMAKYAARLSLILSKTIKLQTDLDSVTIERIEDILCRDENGCIIQDEDGEPRIHTDG 421 Query: 862 TGFISEDLA-------EKIQRSKNPSCEVLPLLSQI------------------RLFYKG 758 TGFISEDLA K + K+ + E + + RLF+ G Sbjct: 422 TGFISEDLAMHCPKDFSKAEYIKDENYENFVDIVDLDDVNVERRVSVSRNRKPCRLFFNG 481 Query: 757 FAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIGQK-HKAYLSQTL 581 A+KGT L+N+K+ I IR SMVKVE D P DSLEI I + +KAYLS+ L Sbjct: 482 CAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPTISSIPTFDSLEIVAISHRPNKAYLSKNL 541 Query: 580 IALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIP 401 I+LL+YGGV +F L ALE+ + A K+ + +DD+ RM+S+GIP Sbjct: 542 ISLLSYGGVHKEYFMELLGSALEETKQVYLRKRAALKVAINYREMDDECLTARMISSGIP 601 Query: 400 VNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSG 221 +NEP L RL + +R GK+ + +S+Y+MGTADP+G L+ NEVC+ILD+GQVSG Sbjct: 602 LNEPHLHARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTGVLESNEVCVILDNGQVSG 661 Query: 220 DVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDL 41 VLVYRNPG HFGDVH+ KA YV+E+ ++VGDAK+GIFFST+G RS A EIA GDFDGD+ Sbjct: 662 RVLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGPRSAATEIANGDFDGDM 721 Query: 40 YWVCINKTVLKDY 2 YWV IN+ ++ Y Sbjct: 722 YWVSINRKLVDSY 734 >ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina] gi|568843311|ref|XP_006475557.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like isoform X2 [Citrus sinensis] gi|557554498|gb|ESR64512.1| hypothetical protein CICLE_v10007331mg [Citrus clementina] Length = 1013 Score = 361 bits (927), Expect = 3e-97 Identities = 210/461 (45%), Positives = 283/461 (61%), Gaps = 34/461 (7%) Frame = -2 Query: 1282 KFHWLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVS-TKCYFVCITSFSIANKN 1106 K++ +A+ GI +G R Y FFV+K+ K EKK ++P+ S KCYFV + S + + Sbjct: 281 KYNEIAREGILVGLRCYHFFVFKDGGKEEKK-----KDPSTSPVKCYFVRMESSAFIDMG 335 Query: 1105 MSRGMSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIEC 926 +S V EAR FMH+ V+++ YM+R SLILSKT L+ D S + + +D C Sbjct: 336 YQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPC 395 Query: 925 IDENGNAARDINGEVMIHTDGTGFISEDLAEK---------------------------- 830 D++GN +GE +IHTDGTGFISEDLA K Sbjct: 396 RDKDGNVVYK-DGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEAN 454 Query: 829 ---IQRSKNPSCEVLPLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENY 659 + R+++ E PLL Q+RLFY G A+KGTLLLNKKLP TI IR SM+KV+ D + Sbjct: 455 FSDVARTESHYGEP-PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDL 513 Query: 658 VCSPAVDSLEICNIG-QKHKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEE 482 +SLE+ Q K YLS+ LIALL+YGGVP+ FF + AL+D ++ Sbjct: 514 SDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKR 573 Query: 481 KAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYY 302 A K+ G+D D+T RM+ +GI ++EP+LQ RL + + K+++ GK+ + SYY Sbjct: 574 NALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYY 633 Query: 301 VMGTADPSGRLKPNEVCIILDHGQVSGD-VLVYRNPGRHFGDVHLYKATYVKEIEEIVGD 125 +MGT DP+G LK NEVCIIL GQVS + VLVYRNPG HFGD+H+ KATYVKE+E+ VG Sbjct: 634 LMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGT 693 Query: 124 AKFGIFFSTQGERSGADEIAGGDFDGDLYWVCINKTVLKDY 2 +K+ IFF G RS ADEIAGGDFDGD+Y+V N +LK + Sbjct: 694 SKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 734 >ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina] gi|568843309|ref|XP_006475556.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like isoform X1 [Citrus sinensis] gi|557554497|gb|ESR64511.1| hypothetical protein CICLE_v10007331mg [Citrus clementina] Length = 1015 Score = 361 bits (927), Expect = 3e-97 Identities = 210/461 (45%), Positives = 283/461 (61%), Gaps = 34/461 (7%) Frame = -2 Query: 1282 KFHWLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVS-TKCYFVCITSFSIANKN 1106 K++ +A+ GI +G R Y FFV+K+ K EKK ++P+ S KCYFV + S + + Sbjct: 283 KYNEIAREGILVGLRCYHFFVFKDGGKEEKK-----KDPSTSPVKCYFVRMESSAFIDMG 337 Query: 1105 MSRGMSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIEC 926 +S V EAR FMH+ V+++ YM+R SLILSKT L+ D S + + +D C Sbjct: 338 YQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPC 397 Query: 925 IDENGNAARDINGEVMIHTDGTGFISEDLAEK---------------------------- 830 D++GN +GE +IHTDGTGFISEDLA K Sbjct: 398 RDKDGNVVYK-DGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEAN 456 Query: 829 ---IQRSKNPSCEVLPLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENY 659 + R+++ E PLL Q+RLFY G A+KGTLLLNKKLP TI IR SM+KV+ D + Sbjct: 457 FSDVARTESHYGEP-PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDL 515 Query: 658 VCSPAVDSLEICNIG-QKHKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEE 482 +SLE+ Q K YLS+ LIALL+YGGVP+ FF + AL+D ++ Sbjct: 516 SDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKR 575 Query: 481 KAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYY 302 A K+ G+D D+T RM+ +GI ++EP+LQ RL + + K+++ GK+ + SYY Sbjct: 576 NALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYY 635 Query: 301 VMGTADPSGRLKPNEVCIILDHGQVSGD-VLVYRNPGRHFGDVHLYKATYVKEIEEIVGD 125 +MGT DP+G LK NEVCIIL GQVS + VLVYRNPG HFGD+H+ KATYVKE+E+ VG Sbjct: 636 LMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGT 695 Query: 124 AKFGIFFSTQGERSGADEIAGGDFDGDLYWVCINKTVLKDY 2 +K+ IFF G RS ADEIAGGDFDGD+Y+V N +LK + Sbjct: 696 SKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736 >ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa] gi|550336519|gb|ERP59562.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa] Length = 866 Score = 359 bits (921), Expect = 2e-96 Identities = 205/454 (45%), Positives = 285/454 (62%), Gaps = 27/454 (5%) Frame = -2 Query: 1282 KFHWLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVS-TKCYFVCITSFSIANKN 1106 K++ + + GI++G R Y FFV+K+ K EKK ++PT S KC+FVC+ S + + N Sbjct: 152 KYNKVLREGIHVGLRCYRFFVFKDGGKEEKK-----KDPTTSPVKCFFVCMESVASVD-N 205 Query: 1105 MSRGMSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIEC 926 + +++AR FMH+ N+++L YMARFSLILSKT L+ DLS V ++ D C Sbjct: 206 QDNILCGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSFVDIKPIADEPC 265 Query: 925 IDENGNAARDINGEVMIHTDGTGFISEDLAEKIQRSK----------------------- 815 D++GNA +G+ +IHTDGTGFIS DLA K +++ Sbjct: 266 RDKDGNAVYGTDGKPLIHTDGTGFISHDLALKCPKNQVKGTCLQASNIERLRVHNEVMEQ 325 Query: 814 NPSC--EVLPLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAV 641 NP C PLL Q RLF G A+KGT L+NKKL T+ +R SM+KVE D + + Sbjct: 326 NPECLHGDPPLLIQFRLFNNGRAVKGTFLVNKKLNHRTLHVRPSMIKVETDPKLSNTFSK 385 Query: 640 DSLEICNIG-QKHKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLL 464 +SLEI + K +LS+ LIALL+YGGVP+ FF + ALED +KA + Sbjct: 386 NSLEIVGTSCRPKKTFLSKNLIALLSYGGVPEEFFMGILNNALEDAH-GILSNKKAALRV 444 Query: 463 KQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTAD 284 N G DD V M+ GIP+ EP+LQ L + K+++ GK+ + SYY+MGTAD Sbjct: 445 ALNYGDMDDNIVATMIGCGIPLEEPYLQHHLSILKKEEKKSLKGGKIPVPESYYLMGTAD 504 Query: 283 PSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFF 104 P+G L+ +EVCIILD GQVSG+VLVYRNPG HFGD+H+ KATYV+E+E+ VG+AK+ IFF Sbjct: 505 PTGLLESDEVCIILDCGQVSGEVLVYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFF 564 Query: 103 STQGERSGADEIAGGDFDGDLYWVCINKTVLKDY 2 +G RS ADE++GGDFDGD+++V N +L+++ Sbjct: 565 PCKGPRSLADEMSGGDFDGDMFFVSRNPRLLENF 598 >ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana] gi|322967566|sp|O82190.2|RDR3_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase 3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana] Length = 992 Score = 358 bits (920), Expect = 2e-96 Identities = 199/445 (44%), Positives = 269/445 (60%), Gaps = 22/445 (4%) Frame = -2 Query: 1270 LAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGM 1091 +A+NGI +G R+Y FFV+K+ K EKK K T KCYF+ S + + Sbjct: 274 IAKNGIMVGLRRYRFFVFKDGGKEEKK----KDVSTKGVKCYFIRTDSTASIDMQNPYIF 329 Query: 1090 SRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENG 911 + + EAR FMH++ +++LP YM+RFSLILSKT L+ D++ +T DI C D++ Sbjct: 330 AGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDD 389 Query: 910 NAARDINGEVMIHTDGTGFISEDLAE---------KIQRSKN------------PSCEVL 794 D NG+ IH+DGTG+ISEDLA K RS N P + Sbjct: 390 KDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPCGQEP 449 Query: 793 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG 614 PLL Q R+FY G+A+KGT L NKKLP T+ +R SM+KV D +SLE+ Sbjct: 450 PLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTS 509 Query: 613 QK-HKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDD 437 KA LS+ L+ALL+YGGVP+ FF + LE+ E A+K N G DD Sbjct: 510 NPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAI-NYG-DDQ 567 Query: 436 YTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTADPSGRLKPNE 257 YT M+ GIP++EP+L+ RL L + ++ G+ +D SYY+MGT DP+G LK NE Sbjct: 568 YTA-DMILVGIPLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENE 626 Query: 256 VCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGA 77 +C+IL GQ+SGDVLVYRNPG HFGD+H+ KATYVK +E+ VG+AKF +FF +G RS Sbjct: 627 ICVILHSGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLG 686 Query: 76 DEIAGGDFDGDLYWVCINKTVLKDY 2 DEIAGGDFDGD+Y++ N +L+ + Sbjct: 687 DEIAGGDFDGDMYFISRNPKLLEHF 711 >ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum tuberosum] Length = 1110 Score = 357 bits (916), Expect = 6e-96 Identities = 206/451 (45%), Positives = 273/451 (60%), Gaps = 30/451 (6%) Frame = -2 Query: 1270 LAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGM 1091 + QNGI +G R+Y FFVYK D +K+ SK+K S KCYFV + S + K + + Sbjct: 370 IVQNGILVGLRRYRFFVYK--DDGKKRSSKDKEEKIDSVKCYFVRMESLNPYEKE-TYIL 426 Query: 1090 SRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENG 911 V EARC FMH+H V+++ KYMARFSL LS T L DL+ V + +DI C D++G Sbjct: 427 RDKMVHEARCNFMHVHMVSSMAKYMARFSLTLSTTVKLQVDLNSVNIDRIEDICCHDKSG 486 Query: 910 NAARDINGEVMIHTDGTGFISEDLAEK--------------IQRSKNP------SCEV-- 797 D +G+ +IHTDGTG+ISEDLA K ++R N S E+ Sbjct: 487 RIIYDEDGKPLIHTDGTGYISEDLARKCPQDFFNVKHRCANLERYTNGVKLGENSSELGE 546 Query: 796 -------LPLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVD 638 PLL Q RLFY G A+KGTLL+N+KLP TI IR SM+KVE D + + Sbjct: 547 AEFQSGEPPLLMQCRLFYNGLAVKGTLLVNRKLPRRTIQIRPSMIKVEADPRLSRAQMFN 606 Query: 637 SLEICNIGQKHK-AYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLK 461 SLEI K + YLS+TLIALL YGGVP +F + LE+ DE A K+ Sbjct: 607 SLEINTPSLKPRNTYLSRTLIALLTYGGVPVEYFYDILNNTLEETQRLYSDEVTALKVAV 666 Query: 460 QNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTADP 281 ++ DD T M+ AG+P+ EP+L L + ++ G++ + +++Y+MGTADP Sbjct: 667 NHRDRDDASTATSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPIADTFYLMGTADP 726 Query: 280 SGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFS 101 + L P+EVC+IL+HGQ+ G+VLVYRNPG HFGD+H A VK + +IVG+AK+GIFFS Sbjct: 727 TDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGDIHRLLAVPVKNLGDIVGNAKYGIFFS 786 Query: 100 TQGERSGADEIAGGDFDGDLYWVCINKTVLK 8 T+G RS A EIA GDFDGD YWV N +LK Sbjct: 787 TKGPRSAATEIANGDFDGDKYWVSQNPQLLK 817 >ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa] gi|550334280|gb|ERP58267.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa] Length = 877 Score = 355 bits (912), Expect = 2e-95 Identities = 203/454 (44%), Positives = 286/454 (62%), Gaps = 27/454 (5%) Frame = -2 Query: 1282 KFHWLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVS-TKCYFVCITSFSIANKN 1106 K++ + GI++G R Y FFV+K+ K EKK ++PT S KC+FV + S + + N Sbjct: 152 KYNKVLGEGIHVGLRCYRFFVFKDGGKEEKK-----KDPTTSPVKCFFVRMESVASID-N 205 Query: 1105 MSRGMSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIEC 926 +S +++AR FMH+ N+++L YMARFSLILSKT L+ DLS V ++ D C Sbjct: 206 QDNILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEPC 265 Query: 925 IDENGNAARDINGEVMIHTDGTGFISEDLAEKIQRSK--------------NPSCEVL-- 794 D++GN +G+ +IHTDGTGFIS DLA K +++ N EV+ Sbjct: 266 RDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQFKGTCLRASNIERLNVHNEVMEQ 325 Query: 793 ---------PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAV 641 PLL Q RLF G A+KGT L+NKKL T+ IR SM+KVE D + + Sbjct: 326 YPECRNGDPPLLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTFSK 385 Query: 640 DSLEICNIGQK-HKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLL 464 +SLEI + K +LS+ LIALL+YGGVP+ FF + ALED ++ A ++ Sbjct: 386 NSLEIVGTSSRPKKTFLSKNLIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVA 445 Query: 463 KQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTAD 284 N G DD V M+ GIP+ EP+LQ RL + + K+++ GK+ + SYY+MGTAD Sbjct: 446 L-NYGDMDDNIVATMIGCGIPLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTAD 504 Query: 283 PSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFF 104 P+G L+ +EVCIILD GQ+SG+VL+YRNPG HFGD+H+ KATYV+E+E+ VG+AK+ IFF Sbjct: 505 PTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFF 564 Query: 103 STQGERSGADEIAGGDFDGDLYWVCINKTVLKDY 2 +G RS ADE++GGDFDGD+++V N +L+ + Sbjct: 565 PCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETF 598 >ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa] gi|550334279|gb|ERP58266.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa] Length = 899 Score = 355 bits (912), Expect = 2e-95 Identities = 203/454 (44%), Positives = 286/454 (62%), Gaps = 27/454 (5%) Frame = -2 Query: 1282 KFHWLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVS-TKCYFVCITSFSIANKN 1106 K++ + GI++G R Y FFV+K+ K EKK ++PT S KC+FV + S + + N Sbjct: 174 KYNKVLGEGIHVGLRCYRFFVFKDGGKEEKK-----KDPTTSPVKCFFVRMESVASID-N 227 Query: 1105 MSRGMSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIEC 926 +S +++AR FMH+ N+++L YMARFSLILSKT L+ DLS V ++ D C Sbjct: 228 QDNILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEPC 287 Query: 925 IDENGNAARDINGEVMIHTDGTGFISEDLAEKIQRSK--------------NPSCEVL-- 794 D++GN +G+ +IHTDGTGFIS DLA K +++ N EV+ Sbjct: 288 RDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQFKGTCLRASNIERLNVHNEVMEQ 347 Query: 793 ---------PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAV 641 PLL Q RLF G A+KGT L+NKKL T+ IR SM+KVE D + + Sbjct: 348 YPECRNGDPPLLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTFSK 407 Query: 640 DSLEICNIGQK-HKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLL 464 +SLEI + K +LS+ LIALL+YGGVP+ FF + ALED ++ A ++ Sbjct: 408 NSLEIVGTSSRPKKTFLSKNLIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVA 467 Query: 463 KQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTAD 284 N G DD V M+ GIP+ EP+LQ RL + + K+++ GK+ + SYY+MGTAD Sbjct: 468 L-NYGDMDDNIVATMIGCGIPLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTAD 526 Query: 283 PSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFF 104 P+G L+ +EVCIILD GQ+SG+VL+YRNPG HFGD+H+ KATYV+E+E+ VG+AK+ IFF Sbjct: 527 PTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFF 586 Query: 103 STQGERSGADEIAGGDFDGDLYWVCINKTVLKDY 2 +G RS ADE++GGDFDGD+++V N +L+ + Sbjct: 587 PCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETF 620 >ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Capsella rubella] gi|482565607|gb|EOA29796.1| hypothetical protein CARUB_v10012890mg [Capsella rubella] Length = 998 Score = 351 bits (900), Expect = 4e-94 Identities = 193/439 (43%), Positives = 273/439 (62%), Gaps = 13/439 (2%) Frame = -2 Query: 1279 FHWLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMS 1100 + +A+NGI +G R+Y FFV+K+ K KK +++ KCYF+ S ++++ Sbjct: 284 YEGIAKNGIMVGLRRYQFFVFKDGGKEGKKKDFSRQG----VKCYFIRTGSTALSDMENP 339 Query: 1099 RGMSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECID 920 + + EAR FMH++N+ + YMARFSLILSKT L+ D++ +T DI C D Sbjct: 340 YILDGMSIHEARMHFMHVYNLPSPANYMARFSLILSKTKKLEMDMTGITFEKIDDIHCHD 399 Query: 919 ENGNAARDINGEVMIHTDGTGFISEDLAE---------KIQRSKN--PSC-EVLPLLSQI 776 ++ + D NG+ IH+DGTG+ISEDLA K RS N +C E PLL Q Sbjct: 400 QDNHDVLDKNGKPCIHSDGTGYISEDLARMCPINIFKGKSIRSNNIKGTCGEDPPLLIQF 459 Query: 775 RLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIGQKHK-A 599 R+FYKG+A+KGT L NKKLP T+ +R SM+KV D+ + +SLE+ N K Sbjct: 460 RMFYKGYAVKGTFLSNKKLPPQTVQVRPSMIKVYEDQALLNFSTFNSLEVVNTSNPPKMT 519 Query: 598 YLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRM 419 LS+ LIALL+YGGVP+ FF + + LE+ E A K N G DD M Sbjct: 520 RLSRNLIALLSYGGVPNDFFLNILRKTLEESKTIFYSERAAIKAAI-NYGDMDDQNTAEM 578 Query: 418 LSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTADPSGRLKPNEVCIILD 239 + IP++EP L+ RL L + +++G++ + SYY+MGT DP+G LK NEVC+IL+ Sbjct: 579 ILVDIPLDEPHLKDRLSILLKTEKNALKEGRLPIGESYYLMGTVDPTGELKENEVCVILE 638 Query: 238 HGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGG 59 GQ+SG+VLVYRNPG HFGD+H+ KATYVK +E+ VG++K+ +FF +G RS DEIAGG Sbjct: 639 TGQISGNVLVYRNPGLHFGDIHVLKATYVKALEDYVGNSKYAVFFPQKGPRSLGDEIAGG 698 Query: 58 DFDGDLYWVCINKTVLKDY 2 DFDGD+Y++ N +L+ + Sbjct: 699 DFDGDMYFISRNPQLLEHF 717 >ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum lycopersicum] Length = 759 Score = 351 bits (900), Expect = 4e-94 Identities = 198/446 (44%), Positives = 268/446 (60%), Gaps = 30/446 (6%) Frame = -2 Query: 1270 LAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGM 1091 + QNGI +G R+Y FFVYK D +K+ K+K S KCYFV + S + +N + + Sbjct: 314 IVQNGILVGLRRYRFFVYK--DDGKKRRLKDKEEKIDSVKCYFVRMESLN-PYENETYIL 370 Query: 1090 SRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENG 911 V EARC FMH+H V+++ KYMARFSLILS T L DL+ V + +DI C D++G Sbjct: 371 HDKMVHEARCNFMHVHMVSSMAKYMARFSLILSTTVKLQVDLNSVNIDRIEDIYCHDKSG 430 Query: 910 NAARDINGEVMIHTDGTGFISEDLAEKIQRS----KNPSCEVL----------------- 794 D +G+ +IHTDGTG+ISEDLA K + K+ ++ Sbjct: 431 RIIYDEDGKPLIHTDGTGYISEDLARKCPQDFFNVKHKCANLVRYANGVKLGENSSELGE 490 Query: 793 --------PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVD 638 PLL Q RLFY G A+KGTLL+N+KLP TI IR SM+KVE D + + Sbjct: 491 AEFQSGEPPLLMQCRLFYNGLAVKGTLLVNRKLPQRTIQIRPSMIKVEADPRLSRAHMFN 550 Query: 637 SLEICNIGQKHK-AYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLK 461 SLEI K + YLS+TLIALL YGGVP +F + LE+ DE A K+ Sbjct: 551 SLEINTPSLKPRNTYLSRTLIALLTYGGVPVEYFYDILNNTLEETQRLYSDEVTALKVAV 610 Query: 460 QNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTADP 281 ++ DD T M+ AG+P+ EP+L L + ++ G++ + +++Y+MGTADP Sbjct: 611 NHRDRDDASTATSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPIADTFYLMGTADP 670 Query: 280 SGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFS 101 + L +EVC+IL+HGQ+ G+VL+YRNPG HFGD+H A VK + +IVG+AK+GIFFS Sbjct: 671 TDTLNRHEVCVILEHGQIFGEVLIYRNPGLHFGDIHRLLAVPVKNLGDIVGNAKYGIFFS 730 Query: 100 TQGERSGADEIAGGDFDGDLYWVCIN 23 T+G RS A EIA GDFDGD YW+ N Sbjct: 731 TKGPRSAATEIANGDFDGDKYWISQN 756 >ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella] gi|482565615|gb|EOA29804.1| hypothetical protein CARUB_v10012898mg [Capsella rubella] Length = 982 Score = 350 bits (898), Expect = 7e-94 Identities = 192/436 (44%), Positives = 268/436 (61%), Gaps = 13/436 (2%) Frame = -2 Query: 1270 LAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGM 1091 +A+NGI +G R+Y FFV+K+ K +K NK T KCYF+ S + + Sbjct: 278 IAKNGIMVGLRRYKFFVFKDGGKDDK----NKDVSTKRAKCYFIRTDSTASIDMEKPYIF 333 Query: 1090 SRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENG 911 S + EAR FMH+H + +L YMARFSLILSKT L+ DL+ V KDI C D++G Sbjct: 334 SGKSIHEARMHFMHVHTLPSLANYMARFSLILSKTKKLEVDLTGVNFEIIKDIPCHDQDG 393 Query: 910 NAARDINGEVMIHTDGTGFISEDLAE------------KIQRSKNPSCEVLPLLSQIRLF 767 D N + IH+DGTG+ISEDLA+ + + K + PLL Q R+F Sbjct: 394 KDVLDKNKKPRIHSDGTGYISEDLAQMCPVNIYKGKCLRSDKIKEACGQEPPLLIQFRMF 453 Query: 766 YKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIGQKHK-AYLS 590 Y G+AIKGT LLNKK+P T+ +R SM+KV D S ++LE+ N K LS Sbjct: 454 YNGYAIKGTFLLNKKIPSRTVQVRPSMIKVLPDSLPNIS-TFNTLEVVNTSFPPKRTKLS 512 Query: 589 QTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSA 410 + L+ALL+YGG+PD FF + LE+ ++ A + G DD +M+ A Sbjct: 513 RNLVALLSYGGIPDEFFLDILHNTLEESKAIFYNKRAALNAAL-SYGEMDDQNAAQMILA 571 Query: 409 GIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTADPSGRLKPNEVCIILDHGQ 230 GIP++EP L+ L +L + +++ G++ + SYY+MGT DP+G LK +EVC+IL+ GQ Sbjct: 572 GIPLDEPHLKTCLSSFLKREKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQ 631 Query: 229 VSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFD 50 +SG+VLVYRNPG HFGD+H+ KATYVK +EE VG++KF +FF +G RS DEIAGGDFD Sbjct: 632 ISGEVLVYRNPGLHFGDIHVLKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFD 691 Query: 49 GDLYWVCINKTVLKDY 2 GD+Y++ N +L+ + Sbjct: 692 GDIYFISRNPELLEHF 707 >ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana] gi|322967572|sp|O82188.2|RDR5_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 5; Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase 5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana] Length = 977 Score = 348 bits (892), Expect = 4e-93 Identities = 193/436 (44%), Positives = 270/436 (61%), Gaps = 13/436 (2%) Frame = -2 Query: 1270 LAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGM 1091 +A+NGI IG R+Y FFV+K+ K EKK K T KCYF+ S + + + Sbjct: 270 IAKNGIMIGLRRYQFFVFKDGGKEEKK----KDLSTKKVKCYFIRTDSTAFYDMQNPYIL 325 Query: 1090 SRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENG 911 + + EAR FMH+H TL YMARFSLILSKT L+ D++ +T DI C D++G Sbjct: 326 TGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDG 385 Query: 910 NAARDINGEVMIHTDGTGFISEDLAE---------KIQRSKN--PSC-EVLPLLSQIRLF 767 D N + IH+DGTG+ISEDLA K RS++ +C + PLL Q R+F Sbjct: 386 KDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMF 445 Query: 766 YKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIGQKHK-AYLS 590 Y G+A+KGT LLNKKL T+ +R SM+KV +D + ++LE+ K LS Sbjct: 446 YDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLS 505 Query: 589 QTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSA 410 + L+ALL+YGG+P+ FF + LE+ S ++A N G DD +M+ Sbjct: 506 KNLVALLSYGGIPNEFFLDILLNTLEE-SKSIFYNKRAALNAALNYGEMDDQNAAQMILV 564 Query: 409 GIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTADPSGRLKPNEVCIILDHGQ 230 GIP++EP L+ L L + +++ GK+ + SYY+MGT DP+G LK +EVC+IL+ GQ Sbjct: 565 GIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQ 624 Query: 229 VSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFD 50 +SG+VLVYRNPG HFGD+H+ KATYVK +EE VG++KF +FF +G RS DEIAGGDFD Sbjct: 625 ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFD 684 Query: 49 GDLYWVCINKTVLKDY 2 GD+Y++ N +L+++ Sbjct: 685 GDMYFISRNPELLENF 700 >ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata subsp. lyrata] Length = 981 Score = 347 bits (890), Expect = 6e-93 Identities = 190/436 (43%), Positives = 268/436 (61%), Gaps = 13/436 (2%) Frame = -2 Query: 1270 LAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGM 1091 +A+NGI IG R+Y FFV+K+ K EKK K T KCYF+ S + + Sbjct: 274 IAKNGIMIGLRRYQFFVFKDGGKEEKK----KDLSTKKVKCYFIRTDSTASCDMENPYIF 329 Query: 1090 SRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENG 911 + + EAR FMH+H TL YMARFSLILSKT L+ D++ +T DI C D++G Sbjct: 330 TGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDPIDDIHCHDQDG 389 Query: 910 NAARDINGEVMIHTDGTGFISEDLAE---------KIQRSKN--PSC-EVLPLLSQIRLF 767 D N + IH+DGTG+ISEDLA K RS+N +C + PLL Q R+F Sbjct: 390 KDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSENIQEACNQDPPLLIQFRMF 449 Query: 766 YKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIGQK-HKAYLS 590 Y G+A+KGT LLNKKL T+ +R SM+KV +D + ++LE+ + LS Sbjct: 450 YDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPRRTKLS 509 Query: 589 QTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSA 410 + L+ALL+YGG+P+ FF + LE+ ++ A + N G DD +M+ Sbjct: 510 KNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKHAALNVAL-NYGEMDDQNAAQMILV 568 Query: 409 GIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTADPSGRLKPNEVCIILDHGQ 230 GIP++EP L+ L L + +++ G++ + SYY+MGT DP+G LK +EVC+IL+ GQ Sbjct: 569 GIPLDEPHLKNHLSILLKTEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQ 628 Query: 229 VSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFD 50 +SG+VLVYRNPG HFGD+H+ KATYVK +EE VG++K+ +FF +G RS DEIAGGDFD Sbjct: 629 ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFD 688 Query: 49 GDLYWVCINKTVLKDY 2 GD+Y++ N +L+ + Sbjct: 689 GDMYFISRNPELLEHF 704 >ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana] gi|322967571|sp|O82189.2|RDR4_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 4; Short=AtRDRP4; AltName: Full=RNA-directed RNA polymerase 4 gi|330251849|gb|AEC06943.1| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana] Length = 927 Score = 346 bits (888), Expect = 1e-92 Identities = 198/443 (44%), Positives = 272/443 (61%), Gaps = 16/443 (3%) Frame = -2 Query: 1282 KFHWLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNM 1103 K+ +A+NGI +G R+Y FFV+K+ K EKK KRN T KCYF+ S + ++ Sbjct: 270 KYKEIAKNGIMVGLRRYQFFVFKDGGKAEKK----KRNSTKQVKCYFIRTGSTASSDMEN 325 Query: 1102 SRGMSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECI 923 +S + EAR FMH+H + + YMARFSLILSKT L+ D++++TV DI C Sbjct: 326 PYILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQIDDIHCH 385 Query: 922 DENGNAARDINGEVMIHTDGTGFISEDLAE---------KIQRSKN---PSCEVLPLLSQ 779 D++ N D NG+ IH+DGTG+ISEDLA K RS N + PLL Q Sbjct: 386 DQSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQ 445 Query: 778 IRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIGQKHK- 602 IR+F G A+KG LLNK LP T+ +R SM+KV +D+N +SLE+ K Sbjct: 446 IRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKR 505 Query: 601 AYLSQTLIALLNYGGVPDSFFKALTWRALE---DLSIKCRDEEKAWKLLKQNQGLDDDYT 431 A LS+ L+ALL+YGGVP+ FF + LE + K R KA + G DD Sbjct: 506 AKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKA----ALHYGNMDDKN 561 Query: 430 VLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVCLDNSYYVMGTADPSGRLKPNEVC 251 L+M+ AGIP++EP+L+ L + L + +++ GK+ +D SYY+MGT DP+G LK +EV Sbjct: 562 ALQMIMAGIPLDEPYLKHYLSKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEVS 621 Query: 250 IILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADE 71 + S DVLVYRNPG HFGD+H+ KATYVK +E+ VG++K+G+FF +G RS DE Sbjct: 622 GLAK----SQDVLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDE 677 Query: 70 IAGGDFDGDLYWVCINKTVLKDY 2 IAGGDFDGD+Y++ N +L+ Y Sbjct: 678 IAGGDFDGDMYFISRNPKLLEHY 700