BLASTX nr result
ID: Ephedra27_contig00024919
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00024919
(543 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_227373.1| polymerase [Strawberry latent ringspot virus] 318 4e-85
ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot... 318 4e-85
ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent sphe... 83 5e-14
ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]... 83 5e-14
ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf ... 82 8e-14
ref|YP_081444.1| polyprotein [Cherry rasp leaf virus] gi|8200270... 82 8e-14
ref|NP_734012.1| RNA-dependent RNA polymerase [Squash mosaic virus] 82 1e-13
ref|NP_620657.1| polyprotein [Squash mosaic virus] gi|14971002|d... 82 1e-13
gb|AAW92113.2| polyprotein [Cherry rasp leaf virus] 82 1e-13
gb|AAZ76594.1| polyprotein [Stocky prune virus] 79 5e-13
gb|AAY32935.1| RNA-dependent RNA polymerase [Radish mosaic virus] 78 1e-12
gb|ACE06773.1| polyprotein [Radish mosaic virus] 78 1e-12
ref|YP_001911126.1| polyprotein [Radish mosaic virus] gi|1561192... 77 3e-12
dbj|BAG84602.1| RNA1-polyprotein [Radish mosaic virus] 77 3e-12
gb|ADZ55760.1| polyprotein [Radish mosaic virus] 76 5e-12
gb|ABZ89551.1| polyprotein 1 [Squash mosaic virus] 76 5e-12
ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523... 74 2e-11
sp|Q02941.1|POL1_APMV RecName: Full=RNA1 polyprotein; AltName: F... 72 1e-10
ref|NP_734057.1| RNA-dependent RNA polymerase [Cowpea mosaic virus] 71 1e-10
ref|NP_613283.1| polyprotein [Cowpea mosaic virus] gi|138362|sp|... 71 1e-10
>ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]
Length = 675
Score = 318 bits (816), Expect = 4e-85
Identities = 149/180 (82%), Positives = 164/180 (91%)
Frame = +1
Query: 1 VGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCF 180
VGDDNLVSVK++AA +FNLKKLS+FLA FGFTLKDGSDK+KEILPEFNPPEKCDFLKRCF
Sbjct: 380 VGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCF 439
Query: 181 KARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRD 360
KARGDRYLAP HWVRETNM+NA ATQNNVEGFLRELFHYGDKELYCKWRRD
Sbjct: 440 KARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGFLRELFHYGDKELYCKWRRD 499
Query: 361 LIDLCSKNRVPHPTTYSFEELERSWLSGKSVASIFEKEESEVIVIRDSASDVAPGVHIVP 540
LI LC++NRVPHPT+YSFEELERSWLSGK+VASIFEKEE E++V++D+ASDVAP VHIVP
Sbjct: 500 LISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPEIVVLKDAASDVAPNVHIVP 559
>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
gi|58040997|gb|AAW63128.1| 250 kDa polyprotein
[Strawberry latent ringspot virus]
Length = 2227
Score = 318 bits (816), Expect = 4e-85
Identities = 149/180 (82%), Positives = 164/180 (91%)
Frame = +1
Query: 1 VGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCF 180
VGDDNLVSVK++AA +FNLKKLS+FLA FGFTLKDGSDK+KEILPEFNPPEKCDFLKRCF
Sbjct: 1932 VGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCF 1991
Query: 181 KARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRD 360
KARGDRYLAP HWVRETNM+NA ATQNNVEGFLRELFHYGDKELYCKWRRD
Sbjct: 1992 KARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGFLRELFHYGDKELYCKWRRD 2051
Query: 361 LIDLCSKNRVPHPTTYSFEELERSWLSGKSVASIFEKEESEVIVIRDSASDVAPGVHIVP 540
LI LC++NRVPHPT+YSFEELERSWLSGK+VASIFEKEE E++V++D+ASDVAP VHIVP
Sbjct: 2052 LISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPEIVVLKDAASDVAPNVHIVP 2111
>ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent spherical virus]
Length = 709
Score = 82.8 bits (203), Expect = 5e-14
Identities = 55/155 (35%), Positives = 78/155 (50%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNL+SV + FNL +S+ L + G TLK+G+DK++EIL F P EK DFLKR F
Sbjct: 398 GDDNLISVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFT 457
Query: 184 ARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDL 363
+AP HWVR+ + +A AT N + L E +G ELY R
Sbjct: 458 TLQGHIVAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHG--ELYYNDLRGK 514
Query: 364 IDLCSKNRVPHPTTYSFEELERSWLSGKSVASIFE 468
I+ K + +++ +L+G S A +
Sbjct: 515 IEKACKVKGLPLIVPDYQDALSLFLTGGSYAKAIQ 549
>ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]
gi|7007468|dbj|BAA90870.1| 235K polyprotein [Apple latent
spherical virus]
Length = 2079
Score = 82.8 bits (203), Expect = 5e-14
Identities = 55/155 (35%), Positives = 78/155 (50%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNL+SV + FNL +S+ L + G TLK+G+DK++EIL F P EK DFLKR F
Sbjct: 1768 GDDNLISVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFT 1827
Query: 184 ARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDL 363
+AP HWVR+ + +A AT N + L E +G ELY R
Sbjct: 1828 TLQGHIVAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHG--ELYYNDLRGK 1884
Query: 364 IDLCSKNRVPHPTTYSFEELERSWLSGKSVASIFE 468
I+ K + +++ +L+G S A +
Sbjct: 1885 IEKACKVKGLPLIVPDYQDALSLFLTGGSYAKAIQ 1919
>ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf virus]
Length = 707
Score = 82.0 bits (201), Expect = 8e-14
Identities = 47/107 (43%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNLVSV ++ +FNL K++ LA+ G TLK+G+DK++EIL F P EK DFLKR F
Sbjct: 398 GDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFV 457
Query: 184 ARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRE-LFH 321
+AP HW+R+ + A AT N E LFH
Sbjct: 458 HYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 503
>ref|YP_081444.1| polyprotein [Cherry rasp leaf virus]
gi|82002707|sp|Q6EWG9.1|POL1_CRLVP RecName: Full=RNA1
polyprotein; AltName: Full=Genome polyprotein B; AltName:
Full=P1; Contains: RecName: Full=Protease cofactor;
Contains: RecName: Full=Putative helicase; AltName:
Full=Membrane-binding protein; AltName: Full=NTP-binding
protein; Short=NTB; Contains: RecName: Full=Viral
genome-linked protein; AltName: Full=VPg; Contains:
RecName: Full=Picornain 3C-like protease; Short=3C-like
protease; Contains: RecName: Full=RNA-directed RNA
polymerase gi|50399319|emb|CAF21713.1| polyprotein
[Cherry rasp leaf virus]
Length = 2250
Score = 82.0 bits (201), Expect = 8e-14
Identities = 47/107 (43%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNLVSV ++ +FNL K++ LA+ G TLK+G+DK++EIL F P EK DFLKR F
Sbjct: 1941 GDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFV 2000
Query: 184 ARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRE-LFH 321
+AP HW+R+ + A AT N E LFH
Sbjct: 2001 HYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2046
>ref|NP_734012.1| RNA-dependent RNA polymerase [Squash mosaic virus]
Length = 711
Score = 81.6 bits (200), Expect = 1e-13
Identities = 47/120 (39%), Positives = 63/120 (52%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNL+SV + AS FN + L + +A FG T+ DG DK+ L EF CDFLKR FK
Sbjct: 390 GDDNLISVSHVVASVFNGRTLKAEMAQFGVTITDGIDKTSPTL-EFRKLSNCDFLKRGFK 448
Query: 184 ARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDL 363
G Y +P H+V TN+ A N+ L+EL+ Y +E+ R+ L
Sbjct: 449 LNGLIYDSPEEKSSLWAQLHYVNTTNLDKQEAYLVNLNNVLKELYMYSPEEMNMLRRKAL 508
>ref|NP_620657.1| polyprotein [Squash mosaic virus] gi|14971002|dbj|BAB62139.1|
polyprotein [Squash mosaic virus]
Length = 1858
Score = 81.6 bits (200), Expect = 1e-13
Identities = 47/120 (39%), Positives = 63/120 (52%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNL+SV + AS FN + L + +A FG T+ DG DK+ L EF CDFLKR FK
Sbjct: 1537 GDDNLISVSHVVASVFNGRTLKAEMAQFGVTITDGIDKTSPTL-EFRKLSNCDFLKRGFK 1595
Query: 184 ARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDL 363
G Y +P H+V TN+ A N+ L+EL+ Y +E+ R+ L
Sbjct: 1596 LNGLIYDSPEEKSSLWAQLHYVNTTNLDKQEAYLVNLNNVLKELYMYSPEEMNMLRRKAL 1655
>gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]
Length = 2235
Score = 81.6 bits (200), Expect = 1e-13
Identities = 47/107 (43%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNLVSV ++ FNL K++ LA+ G TLK+G+DK++EIL F P EK DFLKR F
Sbjct: 1926 GDDNLVSVNDVITERFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFV 1985
Query: 184 ARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRE-LFH 321
+AP HW+R+ + A AT N E LFH
Sbjct: 1986 HYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2031
>gb|AAZ76594.1| polyprotein [Stocky prune virus]
Length = 795
Score = 79.3 bits (194), Expect = 5e-13
Identities = 52/125 (41%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNP-PEKCDFLKRCF 180
GDDNLVSV + +S +NL +SSFL + G LK+G K +E P F+P P CDFLKR F
Sbjct: 493 GDDNLVSVSDKYSSLYNLVSISSFLRERGVVLKNGQCKDEEDFPPFSPSPSTCDFLKRRF 552
Query: 181 -KARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRE--LFHYGDKELYCKW 351
R LAP HWVR++ Q NV+G LRE F E +
Sbjct: 553 VLGSSGRVLAPLDKSSLLGCAHWVRKSQDPGEAIVQ-NVQGILRECVAFEENSYEFFHDM 611
Query: 352 RRDLI 366
RR L+
Sbjct: 612 RRKLL 616
>gb|AAY32935.1| RNA-dependent RNA polymerase [Radish mosaic virus]
Length = 709
Score = 78.2 bits (191), Expect = 1e-12
Identities = 46/111 (41%), Positives = 59/111 (53%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNL+SV E+ F+ K+L FLA T+ DG DK+ L +F E CDFLKR FK
Sbjct: 392 GDDNLLSVSEVIKPYFDGKRLKEFLATLRITITDGKDKTSPFL-QFRCLEDCDFLKRGFK 450
Query: 184 ARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKE 336
RG + AP H+V N+ A + N+ LRELF + KE
Sbjct: 451 NRGLYWDAPEEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMWDKKE 501
>gb|ACE06773.1| polyprotein [Radish mosaic virus]
Length = 1853
Score = 78.2 bits (191), Expect = 1e-12
Identities = 46/111 (41%), Positives = 59/111 (53%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNL+SV E+ F+ K+L FLA T+ DG DK+ L +F E CDFLKR FK
Sbjct: 1536 GDDNLLSVSEVIKPYFDGKRLKEFLATLRITITDGKDKTSPFL-QFRCLEDCDFLKRGFK 1594
Query: 184 ARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKE 336
RG + AP H+V N+ A + N+ LRELF + KE
Sbjct: 1595 NRGLYWDAPEEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMWDKKE 1645
>ref|YP_001911126.1| polyprotein [Radish mosaic virus] gi|156119266|dbj|BAF75830.1|
polyprotein [Radish mosaic virus]
Length = 1853
Score = 77.0 bits (188), Expect = 3e-12
Identities = 47/120 (39%), Positives = 61/120 (50%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNL+SV E+ F+ K+L FLA T+ DG DK+ L +F E CDFLKR FK
Sbjct: 1536 GDDNLLSVSEVIKPYFDGKRLKDFLATLHITITDGKDKTSPFL-QFRRLEDCDFLKRGFK 1594
Query: 184 ARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDL 363
RG + AP H+V N+ A + N+ LRELF + E R+ L
Sbjct: 1595 NRGLYWDAPEDKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMWDKNECAALRRKAL 1654
>dbj|BAG84602.1| RNA1-polyprotein [Radish mosaic virus]
Length = 1853
Score = 76.6 bits (187), Expect = 3e-12
Identities = 49/125 (39%), Positives = 64/125 (51%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNL+SV E+ F+ K+L FLA T+ DG DK+ L +F E CDFLKR FK
Sbjct: 1536 GDDNLLSVNEVIKPYFDGKRLKEFLATLHITITDGKDKTSPFL-QFRCLEDCDFLKRGFK 1594
Query: 184 ARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDL 363
RG + AP H+V N+ A + N+ LRELF + DK + RR
Sbjct: 1595 NRGLYWDAPEEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMW-DKNECAELRRKA 1653
Query: 364 IDLCS 378
+ S
Sbjct: 1654 LQRIS 1658
>gb|ADZ55760.1| polyprotein [Radish mosaic virus]
Length = 1853
Score = 76.3 bits (186), Expect = 5e-12
Identities = 49/125 (39%), Positives = 64/125 (51%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNL+SV E+ F+ K+L FLA T+ DG DK+ L +F E CDFLKR FK
Sbjct: 1536 GDDNLLSVSEVIKPYFDGKRLKEFLATLHITITDGKDKTSPFL-QFRCLEDCDFLKRGFK 1594
Query: 184 ARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDL 363
RG AP H+V ++ AT+ N+ LRELF + DK + RR
Sbjct: 1595 NRGLYLDAPERKKSLWAQLHYVNANHLEKHEATRTNLVTVLRELFMW-DKNECAELRRKA 1653
Query: 364 IDLCS 378
+ S
Sbjct: 1654 LQRIS 1658
>gb|ABZ89551.1| polyprotein 1 [Squash mosaic virus]
Length = 1858
Score = 76.3 bits (186), Expect = 5e-12
Identities = 42/112 (37%), Positives = 60/112 (53%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNL+SV + A+ FN + L + +A FG T+ DG DK+ L EF CDFLKR FK
Sbjct: 1537 GDDNLISVSHVVANVFNGRTLKAEMAQFGVTITDGIDKTSPTL-EFRKLSNCDFLKRGFK 1595
Query: 184 ARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKEL 339
G Y +P H+V T++ A N+ L+EL+ + +E+
Sbjct: 1596 LNGLVYDSPEEKSSLWAQLHYVNTTSLDKQEAYLVNLNNVLKELYMHSPEEM 1647
>ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523|gb|AFI74271.1|
polyprotein [Arracacha virus B]
Length = 2314
Score = 73.9 bits (180), Expect = 2e-11
Identities = 49/130 (37%), Positives = 64/130 (49%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNLVSV E + +NLK ++ FL FG TLK+G++K +EIL F P E DFLKR F
Sbjct: 1860 GDDNLVSVSESIKNVYNLKTIAHFLTQFGVTLKNGANKDEEILSSFYPIEGVDFLKRTFV 1919
Query: 184 ARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDL 363
L HWVR+ A +N L E +G E Y R L
Sbjct: 1920 PFRGVMLDRLNKENTLERLHWVRK-GTDEIDAILDNCGSCLLECIAHG-PEFYEDIRSKL 1977
Query: 364 IDLCSKNRVP 393
+ + K ++P
Sbjct: 1978 VRVLGKRKLP 1987
>sp|Q02941.1|POL1_APMV RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B;
AltName: Full=P1; Contains: RecName: Full=Picornain
3C-like protease; Short=3C-like protease; AltName:
Full=24 kDa protein; Contains: RecName:
Full=RNA-directed RNA polymerase; AltName: Full=87 kDa
protein gi|209741|gb|AAA42422.1| RNA polymerase, partial
[Andean potato mottle virus]
Length = 729
Score = 71.6 bits (174), Expect = 1e-10
Identities = 48/124 (38%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNL+SV + +FN K L +A FG T+ DG DK+ L EF P E CDFLKR F
Sbjct: 414 GDDNLISVSPVIHDKFNGKLLKECMARFGVTITDGKDKTLPTL-EFRPLEDCDFLKRGFI 472
Query: 184 ARGDR-YLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRD 360
R + + AP H+V S A N+ +REL+ + KE R+
Sbjct: 473 QRSELVWDAPEERSSLYTQLHYVSTKMQSLEDAYTGNLVNVIRELYMHSPKEASDLRRKA 532
Query: 361 LIDL 372
L DL
Sbjct: 533 LRDL 536
>ref|NP_734057.1| RNA-dependent RNA polymerase [Cowpea mosaic virus]
Length = 711
Score = 71.2 bits (173), Expect = 1e-10
Identities = 45/112 (40%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNL+SV + F+ KKL LA G T+ DG DK+ LP F E+CDFLKR F
Sbjct: 389 GDDNLISVNAVVTPYFDGKKLKQSLAQGGVTITDGKDKTSLELP-FRRLEECDFLKRTFV 447
Query: 184 ARGDR-YLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKE 336
R + AP H+V N VA NV LREL+ + +E
Sbjct: 448 QRSSTIWDAPEDKASLWSQLHYVNCNNCEKEVAYLTNVVNVLRELYMHSPRE 499
>ref|NP_613283.1| polyprotein [Cowpea mosaic virus] gi|138362|sp|P03600.1|POL1_CPMVS
RecName: Full=RNA1 polyprotein; AltName: Full=Genome
polyprotein B; AltName: Full=P1; Contains: RecName:
Full=Protease cofactor; AltName: Full=32 kDa protein;
Contains: RecName: Full=Putative helicase; AltName:
Full=58 kDa protein; AltName: Full=Membrane-binding
protein; AltName: Full=NTP-binding protein; Short=NTB;
Contains: RecName: Full=Viral genome-linked protein;
AltName: Full=VPg; Contains: RecName: Full=Picornain
3C-like protease; Short=3C-like protease; AltName:
Full=24 kDa protein; Contains: RecName: Full=RNA-directed
RNA polymerase; AltName: Full=87 kDa protein
gi|58909|emb|CAA25029.1| unnamed protein product [Cowpea
mosaic virus]
Length = 1866
Score = 71.2 bits (173), Expect = 1e-10
Identities = 45/112 (40%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Frame = +1
Query: 4 GDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFK 183
GDDNL+SV + F+ KKL LA G T+ DG DK+ LP F E+CDFLKR F
Sbjct: 1544 GDDNLISVNAVVTPYFDGKKLKQSLAQGGVTITDGKDKTSLELP-FRRLEECDFLKRTFV 1602
Query: 184 ARGDR-YLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKE 336
R + AP H+V N VA NV LREL+ + +E
Sbjct: 1603 QRSSTIWDAPEDKASLWSQLHYVNCNNCEKEVAYLTNVVNVLRELYMHSPRE 1654