BLASTX nr result
ID: Ephedra27_contig00024324
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00024324
(488 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAY78476.1| RNA polymerase IV second largest subunit [Ginkgo ... 254 6e-66
ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV a... 189 4e-46
gb|EEE61785.1| hypothetical protein OsJ_16357 [Oryza sativa Japo... 189 4e-46
gb|EEC78111.1| hypothetical protein OsI_17620 [Oryza sativa Indi... 189 4e-46
ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group] g... 189 4e-46
emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group] 189 4e-46
emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group] 189 4e-46
emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group] 189 4e-46
ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D sub... 187 1e-45
ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D sub... 186 2e-45
ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [S... 185 6e-45
tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subuni... 184 8e-45
gb|ADB19860.1| mutant required to maintain repression 7-3/RNA po... 184 8e-45
gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA p... 184 8e-45
ref|NP_001177299.1| required to maintain repression7 [Zea mays] ... 184 8e-45
ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [S... 184 8e-45
gb|AFW59623.1| putative DNA-directed RNA polymerase subunit fami... 184 1e-44
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me... 184 1e-44
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub... 183 2e-44
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub... 183 2e-44
>gb|AAY78476.1| RNA polymerase IV second largest subunit [Ginkgo biloba]
Length = 651
Score = 254 bits (650), Expect = 6e-66
Identities = 123/163 (75%), Positives = 141/163 (86%), Gaps = 1/163 (0%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSS-RLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGD 310
FRSMH+ F SE ++ +N SS R+++DFGKP NLK+DKLDDDGLPFI + L SGD
Sbjct: 292 FRSMHFHTFISETDHHDNDSKKSSFRVEVDFGKPQTGNLKVDKLDDDGLPFIGASLVSGD 351
Query: 309 VLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSS 130
+LIGKVGPQPSD NFSLKLKHTEKGRVDQV+M+ ND KK+A+V LRE+R PS+GDKFSS
Sbjct: 352 ILIGKVGPQPSDVNFSLKLKHTEKGRVDQVVMSANDDDKKFARVCLREVRSPSLGDKFSS 411
Query: 129 MHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
MHGQKGVVGFIEEQENMPFT++GIVPDLIINPHAFPSRQTPGQ
Sbjct: 412 MHGQKGVVGFIEEQENMPFTQEGIVPDLIINPHAFPSRQTPGQ 454
>ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Oryza brachyantha]
Length = 1250
Score = 189 bits (479), Expect = 4e-46
Identities = 93/166 (56%), Positives = 122/166 (73%), Gaps = 4/166 (2%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDL----DFGKPSGSNLKIDKLDDDGLPFISSDLY 319
FR+ H+R + +E E +++ P + RL + DFGK ++D LDDDGLP++ + L
Sbjct: 886 FRTEHFRNYKAEVE-NKSAPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQ 944
Query: 318 SGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDK 139
SGD++IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDK
Sbjct: 945 SGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDK 1002
Query: 138 FSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
FSSMHGQKGV+GF+E QEN PFT QGIVPD++INPHAFP+RQTPGQ
Sbjct: 1003 FSSMHGQKGVIGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 1048
>gb|EEE61785.1| hypothetical protein OsJ_16357 [Oryza sativa Japonica Group]
Length = 1185
Score = 189 bits (479), Expect = 4e-46
Identities = 94/166 (56%), Positives = 121/166 (72%), Gaps = 4/166 (2%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDL----DFGKPSGSNLKIDKLDDDGLPFISSDLY 319
FR+ H+R + +E E ++ P + RL + DFGK ++D LDDDGLP++ + L
Sbjct: 821 FRTEHFRNYKAEVE-NKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQ 879
Query: 318 SGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDK 139
SGD++IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDK
Sbjct: 880 SGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDK 937
Query: 138 FSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
FSSMHGQKGVVGF+E QEN PFT QGIVPD++INPHAFP+RQTPGQ
Sbjct: 938 FSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 983
>gb|EEC78111.1| hypothetical protein OsI_17620 [Oryza sativa Indica Group]
Length = 1177
Score = 189 bits (479), Expect = 4e-46
Identities = 94/166 (56%), Positives = 121/166 (72%), Gaps = 4/166 (2%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDL----DFGKPSGSNLKIDKLDDDGLPFISSDLY 319
FR+ H+R + +E E ++ P + RL + DFGK ++D LDDDGLP++ + L
Sbjct: 813 FRTEHFRNYKAEVE-NKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQ 871
Query: 318 SGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDK 139
SGD++IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDK
Sbjct: 872 SGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDK 929
Query: 138 FSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
FSSMHGQKGVVGF+E QEN PFT QGIVPD++INPHAFP+RQTPGQ
Sbjct: 930 FSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 975
>ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group]
gi|113565612|dbj|BAF15955.1| Os04g0641000, partial [Oryza
sativa Japonica Group]
Length = 1270
Score = 189 bits (479), Expect = 4e-46
Identities = 94/166 (56%), Positives = 121/166 (72%), Gaps = 4/166 (2%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDL----DFGKPSGSNLKIDKLDDDGLPFISSDLY 319
FR+ H+R + +E E ++ P + RL + DFGK ++D LDDDGLP++ + L
Sbjct: 906 FRTEHFRNYKAEVE-NKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQ 964
Query: 318 SGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDK 139
SGD++IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDK
Sbjct: 965 SGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDK 1022
Query: 138 FSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
FSSMHGQKGVVGF+E QEN PFT QGIVPD++INPHAFP+RQTPGQ
Sbjct: 1023 FSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 1068
>emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group]
Length = 1343
Score = 189 bits (479), Expect = 4e-46
Identities = 94/166 (56%), Positives = 121/166 (72%), Gaps = 4/166 (2%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDL----DFGKPSGSNLKIDKLDDDGLPFISSDLY 319
FR+ H+R + +E E ++ P + RL + DFGK ++D LDDDGLP++ + L
Sbjct: 979 FRTEHFRNYKAEVE-NKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQ 1037
Query: 318 SGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDK 139
SGD++IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDK
Sbjct: 1038 SGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDK 1095
Query: 138 FSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
FSSMHGQKGVVGF+E QEN PFT QGIVPD++INPHAFP+RQTPGQ
Sbjct: 1096 FSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 1141
>emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]
Length = 1316
Score = 189 bits (479), Expect = 4e-46
Identities = 94/166 (56%), Positives = 121/166 (72%), Gaps = 4/166 (2%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDL----DFGKPSGSNLKIDKLDDDGLPFISSDLY 319
FR+ H+R + +E E ++ P + RL + DFGK ++D LDDDGLP++ + L
Sbjct: 952 FRTEHFRNYKAEVE-NKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQ 1010
Query: 318 SGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDK 139
SGD++IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDK
Sbjct: 1011 SGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDK 1068
Query: 138 FSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
FSSMHGQKGVVGF+E QEN PFT QGIVPD++INPHAFP+RQTPGQ
Sbjct: 1069 FSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 1114
>emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]
Length = 1343
Score = 189 bits (479), Expect = 4e-46
Identities = 94/166 (56%), Positives = 121/166 (72%), Gaps = 4/166 (2%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDL----DFGKPSGSNLKIDKLDDDGLPFISSDLY 319
FR+ H+R + +E E ++ P + RL + DFGK ++D LDDDGLP++ + L
Sbjct: 979 FRTEHFRNYKAEVE-NKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQ 1037
Query: 318 SGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDK 139
SGD++IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDK
Sbjct: 1038 SGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDK 1095
Query: 138 FSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
FSSMHGQKGVVGF+E QEN PFT QGIVPD++INPHAFP+RQTPGQ
Sbjct: 1096 FSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 1141
>ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1213
Score = 187 bits (475), Expect = 1e-45
Identities = 91/162 (56%), Positives = 116/162 (71%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDV 307
FR+ H R + +E E E + +DFGK ++D LDDDGLP++ + L SGD+
Sbjct: 852 FRTEHIRSYKAEVETKEPIKRLKLKEKVDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDI 911
Query: 306 LIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSM 127
+IGKV D S+K+KHTEKG V +VL++ ND GK +A V LR++R P VGDKFSSM
Sbjct: 912 VIGKVSESGEDH--SIKMKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCVGDKFSSM 969
Query: 126 HGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
HGQKGV+GF+E QEN PFT QGIVPD++INPHAFP+RQTPGQ
Sbjct: 970 HGQKGVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQ 1011
>ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1213
Score = 186 bits (473), Expect = 2e-45
Identities = 90/162 (55%), Positives = 115/162 (70%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDV 307
FR+ H R + +E E E + +DFGK ++D LDDDGLP++ + L SGD+
Sbjct: 852 FRTEHIRSYKAEVETKEPTKRLKLKEKVDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDI 911
Query: 306 LIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSM 127
+IGKV D S+K+KHTEKG +VL++ ND GK +A V LR++R P VGDKFSSM
Sbjct: 912 VIGKVSESGEDH--SIKMKHTEKGMAQRVLLSANDEGKNFAVVTLRQVRSPCVGDKFSSM 969
Query: 126 HGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
HGQKGV+GF+E QEN PFT QGIVPD++INPHAFP+RQTPGQ
Sbjct: 970 HGQKGVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQ 1011
>ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
gi|241938382|gb|EES11527.1| hypothetical protein
SORBIDRAFT_06g030300 [Sorghum bicolor]
Length = 1239
Score = 185 bits (469), Expect = 6e-45
Identities = 88/162 (54%), Positives = 115/162 (70%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDV 307
FR+ H R + ++ E + + +DFGK ++D LDDDGLP+I + L + D+
Sbjct: 878 FRTEHLRSYKTDVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDI 937
Query: 306 LIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSM 127
+IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDKFSSM
Sbjct: 938 VIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSM 995
Query: 126 HGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
HGQKGVVGF+E QEN PFT +GIVPD++INPHAFP+RQTPGQ
Sbjct: 996 HGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQ 1037
>tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
mays]
Length = 1063
Score = 184 bits (468), Expect = 8e-45
Identities = 87/162 (53%), Positives = 115/162 (70%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDV 307
FR+ H R + ++ E + + +DFGK ++D LDDDGLP++ + L + D+
Sbjct: 868 FRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDI 927
Query: 306 LIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSM 127
+IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDKFSSM
Sbjct: 928 VIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSM 985
Query: 126 HGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
HGQKGVVGF+E QEN PFT +GIVPD++INPHAFP+RQTPGQ
Sbjct: 986 HGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQ 1027
>gb|ADB19860.1| mutant required to maintain repression 7-3/RNA polymerase D second
largest subunit 2-3 [Zea mays]
Length = 1094
Score = 184 bits (468), Expect = 8e-45
Identities = 87/162 (53%), Positives = 115/162 (70%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDV 307
FR+ H R + ++ E + + +DFGK ++D LDDDGLP++ + L + D+
Sbjct: 868 FRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDI 927
Query: 306 LIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSM 127
+IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDKFSSM
Sbjct: 928 VIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSM 985
Query: 126 HGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
HGQKGVVGF+E QEN PFT +GIVPD++INPHAFP+RQTPGQ
Sbjct: 986 HGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQ 1027
>gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
largest subunit 2-2 [Zea mays]
Length = 1229
Score = 184 bits (468), Expect = 8e-45
Identities = 87/162 (53%), Positives = 115/162 (70%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDV 307
FR+ H R + ++ E + + +DFGK ++D LDDDGLP++ + L + D+
Sbjct: 868 FRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDI 927
Query: 306 LIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSM 127
+IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDKFSSM
Sbjct: 928 VIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSM 985
Query: 126 HGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
HGQKGVVGF+E QEN PFT +GIVPD++INPHAFP+RQTPGQ
Sbjct: 986 HGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQ 1027
>ref|NP_001177299.1| required to maintain repression7 [Zea mays]
gi|283443696|gb|ADB19857.1| required to maintain
repression 7/RNA polymerase D second largest subunit [Zea
mays] gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed
RNA polymerase subunit family protein [Zea mays]
Length = 1229
Score = 184 bits (468), Expect = 8e-45
Identities = 87/162 (53%), Positives = 115/162 (70%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDV 307
FR+ H R + ++ E + + +DFGK ++D LDDDGLP++ + L + D+
Sbjct: 868 FRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDI 927
Query: 306 LIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSM 127
+IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDKFSSM
Sbjct: 928 VIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSM 985
Query: 126 HGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
HGQKGVVGF+E QEN PFT +GIVPD++INPHAFP+RQTPGQ
Sbjct: 986 HGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQ 1027
>ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
gi|241922081|gb|EER95225.1| hypothetical protein
SORBIDRAFT_01g042100 [Sorghum bicolor]
Length = 1228
Score = 184 bits (468), Expect = 8e-45
Identities = 88/162 (54%), Positives = 115/162 (70%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDV 307
FR+ H R + ++ E + + +DFGK ++D LDDDGLP+I + L + D+
Sbjct: 867 FRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDI 926
Query: 306 LIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSM 127
+IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDKFSSM
Sbjct: 927 VIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSM 984
Query: 126 HGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
HGQKGVVGF+E QEN PFT +GIVPD++INPHAFP+RQTPGQ
Sbjct: 985 HGQKGVVGFLESQENFPFTHKGIVPDIVINPHAFPTRQTPGQ 1026
>gb|AFW59623.1| putative DNA-directed RNA polymerase subunit family protein [Zea
mays]
Length = 2163
Score = 184 bits (467), Expect = 1e-44
Identities = 88/162 (54%), Positives = 114/162 (70%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDV 307
FR+ H R + ++ E + + +DFGK ++D LDDDGLP+I + L + D+
Sbjct: 1802 FRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDI 1861
Query: 306 LIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSM 127
+IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDKFSSM
Sbjct: 1862 VIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSM 1919
Query: 126 HGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
HGQKGVVGF+E QEN PFT GIVPD++INPHAFP+RQTPGQ
Sbjct: 1920 HGQKGVVGFLESQENFPFTHDGIVPDIVINPHAFPTRQTPGQ 1961
>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1237
Score = 184 bits (467), Expect = 1e-44
Identities = 90/163 (55%), Positives = 119/163 (73%), Gaps = 1/163 (0%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLDL-DFGKPSGSNLKIDKLDDDGLPFISSDLYSGD 310
FRS H R + +E E E+ D+ +FGK ++D LDDDG PF+ ++L SGD
Sbjct: 875 FRSEHIRSYKAEIENKESSEKRKKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQSGD 934
Query: 309 VLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSS 130
++IG+ +D S+KLKHTE+G V +V++++ND GK +A V LR++R P +GDKFSS
Sbjct: 935 IIIGRCADSGTDH--SIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSS 992
Query: 129 MHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
MHGQKGV+GF+E QEN PFTKQGIVPD++INPHAFPSRQTPGQ
Sbjct: 993 MHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ 1035
>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
sativus]
Length = 1031
Score = 183 bits (465), Expect = 2e-44
Identities = 90/163 (55%), Positives = 118/163 (72%), Gaps = 1/163 (0%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLD-LDFGKPSGSNLKIDKLDDDGLPFISSDLYSGD 310
FRS H R + +E + E+ D ++FGK ++D LDDDG P+I ++L SGD
Sbjct: 835 FRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGD 894
Query: 309 VLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSS 130
++IG+ +D S+KLKHTEKG V +V++++ND GK YA V LR++R P +GDKFSS
Sbjct: 895 IVIGRCAESGADH--SIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSS 952
Query: 129 MHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
MHGQKGV+GF+E QEN PFT QGIVPD++INPHAFPSRQTPGQ
Sbjct: 953 MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 995
>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
sativus]
Length = 1197
Score = 183 bits (465), Expect = 2e-44
Identities = 90/163 (55%), Positives = 118/163 (72%), Gaps = 1/163 (0%)
Frame = -3
Query: 486 FRSMHYRLFTSEAEYDENQPLNSSRLD-LDFGKPSGSNLKIDKLDDDGLPFISSDLYSGD 310
FRS H R + +E + E+ D ++FGK ++D LDDDG P+I ++L SGD
Sbjct: 835 FRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGD 894
Query: 309 VLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSS 130
++IG+ +D S+KLKHTEKG V +V++++ND GK YA V LR++R P +GDKFSS
Sbjct: 895 IVIGRCAESGADH--SIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSS 952
Query: 129 MHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQ 1
MHGQKGV+GF+E QEN PFT QGIVPD++INPHAFPSRQTPGQ
Sbjct: 953 MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 995