BLASTX nr result
ID: Ephedra27_contig00024222
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00024222
(506 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO73525.1| gag-pol polyprotein [Glycine max] 110 7e-30
emb|CAN64335.1| hypothetical protein VITISV_001808 [Vitis vinifera] 112 1e-29
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 110 3e-29
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 110 3e-29
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 110 3e-29
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays] 108 7e-29
gb|AAO73529.1| gag-pol polyprotein [Glycine max] 110 7e-29
gb|AAC49502.1| Pol [Zea mays] 115 7e-29
gb|AEJ07899.1| Opie3 putative pol protein [Zea mays subsp. mexic... 114 7e-29
gb|AAL66759.1|AF464738_10 putative pol protein [Zea mays] 114 1e-28
gb|AEJ07931.1| Opie3 pol protein [Zea mays subsp. mexicana] 114 1e-28
gb|AEJ07927.1| Opie2 pol protein [Zea mays subsp. mexicana] 114 1e-28
gb|ABF67934.1| Opie3 pol polyprotein [Zea mays] 114 1e-28
gb|ABF67947.1| Opie2 pol protein [Zea mays] 114 1e-28
gb|AEJ07944.1| Opie1 putative pol protein [Zea diploperennis] 112 1e-28
gb|AEJ07909.1| Opie1 putative pol protein [Zea luxurians] 113 2e-28
gb|AAN40035.1| putative gag-pol polyprotein [Zea mays] 106 2e-28
gb|AAD20307.1| copia-type pol polyprotein [Zea mays] 106 2e-28
gb|ABF67921.1| Ji1 putative pol protein [Zea mays] 106 2e-28
gb|AAL75488.1|AF466202_14 putative pol protein [Zea mays] 106 2e-28
>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 110 bits (274), Expect(2) = 7e-30
Identities = 50/86 (58%), Positives = 65/86 (75%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR NVI KW+F+NK +E+G R +AR+VA+GY Q+ G+D++ETFAPVARLE
Sbjct: 1097 WELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLE 1156
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+ +A L KLYQMDVK AFL
Sbjct: 1157 SIRLLLGVACILKFKLYQMDVKSAFL 1182
Score = 46.2 bits (108), Expect(2) = 7e-30
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = -2
Query: 505 PEKS-FPRVTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKD 329
P+KS F R+ K IIGDP +G+ TRS+ + + C++S+ I P+ +EAL D
Sbjct: 1022 PDKSPFIRIQKMQPKELIIGDPNRGVTTRSREIEIVSNSCFVSK----IEPKNVKEALTD 1077
Query: 328 DGWKAAMKDEID 293
+ W AM++E++
Sbjct: 1078 EFWINAMQEELE 1089
>emb|CAN64335.1| hypothetical protein VITISV_001808 [Vitis vinifera]
Length = 1885
Score = 112 bits (280), Expect(2) = 1e-29
Identities = 56/86 (65%), Positives = 63/86 (73%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR S +VI KWVFRNK DE G R +AR+VA+GY Q GIDYEETFAPVARLE
Sbjct: 992 WELVPRPSNQSVIGTKWVFRNKMDENGIIVRNKARLVAQGYNQEEGIDYEETFAPVARLE 1051
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
A+R L+A A + LYQMDVK AFL
Sbjct: 1052 AIRMLLAFACFKDFILYQMDVKSAFL 1077
Score = 43.1 bits (100), Expect(2) = 1e-29
Identities = 20/57 (35%), Positives = 35/57 (61%)
Frame = -2
Query: 463 NDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMKDEID 293
+ IIG+P G++TRS + N L ++SQ I P+ ++A+ D+ W AM+ E++
Sbjct: 932 DQIIGNPLSGVRTRSSLRNICNNLAFISQ----IEPKNIKDAIVDENWMIAMQKELN 984
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 110 bits (274), Expect(2) = 3e-29
Identities = 50/86 (58%), Positives = 65/86 (75%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR NVI KW+F+NK +E+G R +AR+VA+GY Q+ G+D++ETFAPVARLE
Sbjct: 1097 WELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLE 1156
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+ +A L KLYQMDVK AFL
Sbjct: 1157 SIRLLLGVACILKFKLYQMDVKSAFL 1182
Score = 44.3 bits (103), Expect(2) = 3e-29
Identities = 24/70 (34%), Positives = 42/70 (60%)
Frame = -2
Query: 502 EKSFPRVTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDG 323
++S R+ K IIGDP +G+ TRS+ + + C++S+ I P+ +EAL D+
Sbjct: 1024 KRSSTRIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSK----IEPKNVKEALTDEF 1079
Query: 322 WKAAMKDEID 293
W AM++E++
Sbjct: 1080 WINAMQEELE 1089
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 110 bits (274), Expect(2) = 3e-29
Identities = 50/86 (58%), Positives = 65/86 (75%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR NVI KW+F+NK +E+G R +AR+VA+GY Q+ G+D++ETFAPVARLE
Sbjct: 1097 WELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLE 1156
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+ +A L KLYQMDVK AFL
Sbjct: 1157 SIRLLLGVACILKFKLYQMDVKSAFL 1182
Score = 44.3 bits (103), Expect(2) = 3e-29
Identities = 24/70 (34%), Positives = 42/70 (60%)
Frame = -2
Query: 502 EKSFPRVTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDG 323
++S R+ K IIGDP +G+ TRS+ + + C++S+ I P+ +EAL D+
Sbjct: 1024 KRSSTRIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSK----IEPKNVKEALTDEF 1079
Query: 322 WKAAMKDEID 293
W AM++E++
Sbjct: 1080 WINAMQEELE 1089
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 110 bits (274), Expect(2) = 3e-29
Identities = 50/86 (58%), Positives = 65/86 (75%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR NVI KW+F+NK +E+G R +AR+VA+GY Q+ G+D++ETFAPVARLE
Sbjct: 1095 WELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLE 1154
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+ +A L KLYQMDVK AFL
Sbjct: 1155 SIRLLLGVACILKFKLYQMDVKSAFL 1180
Score = 44.3 bits (103), Expect(2) = 3e-29
Identities = 24/70 (34%), Positives = 42/70 (60%)
Frame = -2
Query: 502 EKSFPRVTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDG 323
++S R+ K IIGDP +G+ TRS+ + + C++S+ I P+ +EAL D+
Sbjct: 1022 KRSSTRIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSK----IEPKNVKEALTDEF 1077
Query: 322 WKAAMKDEID 293
W AM++E++
Sbjct: 1078 WINAMQEELE 1087
>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
Length = 1892
Score = 108 bits (269), Expect(2) = 7e-29
Identities = 53/86 (61%), Positives = 65/86 (75%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR ++ NV+ KWVFRNK DE G R +AR+VAKGY QV G+D++ET+APVARLE
Sbjct: 1412 WHLVPRPNQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFDETYAPVARLE 1470
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+A A KLYQMDVK AFL
Sbjct: 1471 SIRILLAYATYHGFKLYQMDVKSAFL 1496
Score = 44.7 bits (104), Expect(2) = 7e-29
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = -2
Query: 505 PEKSFPRV----TKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEA 338
P PRV +D + I+GD +KG+ TRS+++ + ++S I P +EA
Sbjct: 1334 PRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVS----SIEPHRVEEA 1389
Query: 337 LKDDGWKAAMKDEID 293
L+D W AM++E++
Sbjct: 1390 LQDSDWVVAMQEELN 1404
>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
Length = 1577
Score = 110 bits (274), Expect(2) = 7e-29
Identities = 50/86 (58%), Positives = 65/86 (75%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR NVI KW+F+NK +E+G R +AR+VA+GY Q+ G+D++ETFAPVARLE
Sbjct: 1098 WELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLE 1157
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+ +A L KLYQMDVK AFL
Sbjct: 1158 SIRLLLGVACILKFKLYQMDVKSAFL 1183
Score = 42.7 bits (99), Expect(2) = 7e-29
Identities = 21/55 (38%), Positives = 36/55 (65%)
Frame = -2
Query: 457 IIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMKDEID 293
IIGDP +G+ TRS+ + + C++S+ I P+ +EAL D+ W AM++E++
Sbjct: 1040 IIGDPNRGVTTRSREIEIVSNSCFVSK----IEPKNVKEALTDEFWINAMQEELE 1090
>gb|AAC49502.1| Pol [Zea mays]
Length = 1068
Score = 115 bits (288), Expect(2) = 7e-29
Identities = 56/86 (65%), Positives = 68/86 (79%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR + NV+ KWVFRNK DE+G R +AR+VAKGY QVAG+D+EETFAPVARLE
Sbjct: 589 WTLVPRPKQ-NVVGTKWVFRNKQDERGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLE 647
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+A AA + +LYQMDVK AFL
Sbjct: 648 SIRILLAYAAHHSFRLYQMDVKSAFL 673
Score = 37.4 bits (85), Expect(2) = 7e-29
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = -2
Query: 484 VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 305
+ +D + I+GD KG+ TRS++ + ++S I P +EAL D W AM+
Sbjct: 522 IQRDHPVDQILGDISKGVTTRSRLVNFCEHNSFVS----SIEPFRVEEALLDPDWVLAMQ 577
Query: 304 DEID 293
+E++
Sbjct: 578 EELN 581
>gb|AEJ07899.1| Opie3 putative pol protein [Zea mays subsp. mexicana]
Length = 1048
Score = 114 bits (286), Expect(2) = 7e-29
Identities = 56/86 (65%), Positives = 67/86 (77%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR + NV+ KWVFRNK DE G R +AR+VAKGY QVAG+D+EETFAPVARLE
Sbjct: 569 WTLVPRPKQ-NVVGTKWVFRNKQDEHGMVTRNKARLVAKGYAQVAGLDFEETFAPVARLE 627
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+A AA + +LYQMDVK AFL
Sbjct: 628 SIRILLAYAAHHSFRLYQMDVKSAFL 653
Score = 38.1 bits (87), Expect(2) = 7e-29
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = -2
Query: 484 VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 305
+ +D + I+GD KG+ TRS++ + ++S I P +EAL D W AM+
Sbjct: 502 IQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVS----SIEPFRVEEALLDPDWVLAMQ 557
Query: 304 DEID 293
+E++
Sbjct: 558 EELN 561
>gb|AAL66759.1|AF464738_10 putative pol protein [Zea mays]
Length = 1657
Score = 114 bits (285), Expect(2) = 1e-28
Identities = 56/86 (65%), Positives = 67/86 (77%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR + NV+ KWVFRNK DE G R +AR+VAKGY QVAG+D+EETFAPVARLE
Sbjct: 1178 WTLVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLE 1236
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+A AA + +LYQMDVK AFL
Sbjct: 1237 SIRILLAYAAHHSFRLYQMDVKSAFL 1262
Score = 38.1 bits (87), Expect(2) = 1e-28
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = -2
Query: 484 VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 305
+ +D + I+GD KG+ TRS++ + ++S I P +EAL D W AM+
Sbjct: 1111 IQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVS----SIEPFRVEEALLDPDWVLAMQ 1166
Query: 304 DEID 293
+E++
Sbjct: 1167 EELN 1170
>gb|AEJ07931.1| Opie3 pol protein [Zea mays subsp. mexicana]
Length = 1048
Score = 114 bits (285), Expect(2) = 1e-28
Identities = 56/86 (65%), Positives = 67/86 (77%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR + NV+ KWVFRNK DE G R +AR+VAKGY QVAG+D+EETFAPVARLE
Sbjct: 569 WTLVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLE 627
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+A AA + +LYQMDVK AFL
Sbjct: 628 SIRILLAYAAHHSFRLYQMDVKSAFL 653
Score = 38.1 bits (87), Expect(2) = 1e-28
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = -2
Query: 484 VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 305
+ +D + I+GD KG+ TRS++ + ++S I P +EAL D W AM+
Sbjct: 502 IQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVS----SIEPFRVEEALLDPDWVLAMQ 557
Query: 304 DEID 293
+E++
Sbjct: 558 EELN 561
>gb|AEJ07927.1| Opie2 pol protein [Zea mays subsp. mexicana]
Length = 1048
Score = 114 bits (285), Expect(2) = 1e-28
Identities = 56/86 (65%), Positives = 67/86 (77%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR + NV+ KWVFRNK DE G R +AR+VAKGY QVAG+D+EETFAPVARLE
Sbjct: 569 WTLVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLE 627
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+A AA + +LYQMDVK AFL
Sbjct: 628 SIRILLAYAAHHSFRLYQMDVKSAFL 653
Score = 38.1 bits (87), Expect(2) = 1e-28
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = -2
Query: 484 VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 305
+ +D + I+GD KG+ TRS++ + ++S I P +EAL D W AM+
Sbjct: 502 IQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVS----SIEPFRVEEALLDPDWVLAMQ 557
Query: 304 DEID 293
+E++
Sbjct: 558 EELN 561
>gb|ABF67934.1| Opie3 pol polyprotein [Zea mays]
Length = 1048
Score = 114 bits (285), Expect(2) = 1e-28
Identities = 56/86 (65%), Positives = 67/86 (77%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR + NV+ KWVFRNK DE G R +AR+VAKGY QVAG+D+EETFAPVARLE
Sbjct: 569 WTLVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLE 627
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+A AA + +LYQMDVK AFL
Sbjct: 628 SIRILLAYAAHHSFRLYQMDVKSAFL 653
Score = 38.1 bits (87), Expect(2) = 1e-28
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = -2
Query: 484 VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 305
+ +D + I+GD KG+ TRS++ + ++S I P +EAL D W AM+
Sbjct: 502 IQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVS----SIEPFRVEEALLDPDWVLAMQ 557
Query: 304 DEID 293
+E++
Sbjct: 558 EELN 561
>gb|ABF67947.1| Opie2 pol protein [Zea mays]
Length = 1048
Score = 114 bits (285), Expect(2) = 1e-28
Identities = 56/86 (65%), Positives = 67/86 (77%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR + NV+ KWVFRNK DE G R +AR+VAKGY QVAG+D+EETFAPVARLE
Sbjct: 569 WTLVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLE 627
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+A AA + +LYQMDVK AFL
Sbjct: 628 SIRILLAYAAHHSFRLYQMDVKSAFL 653
Score = 38.1 bits (87), Expect(2) = 1e-28
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = -2
Query: 484 VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 305
+ +D + I+GD KG+ TRS++ + ++S I P +EAL D W AM+
Sbjct: 502 IQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVS----SIEPFRVEEALLDPDWVLAMQ 557
Query: 304 DEID 293
+E++
Sbjct: 558 EELN 561
>gb|AEJ07944.1| Opie1 putative pol protein [Zea diploperennis]
Length = 1065
Score = 112 bits (281), Expect(2) = 1e-28
Identities = 55/86 (63%), Positives = 67/86 (77%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR + NV+ KWVFRNK DE G R +AR+VAKGY QVAG+D+EETFAPVARLE
Sbjct: 586 WTLVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLE 644
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+A AA + +L+QMDVK AFL
Sbjct: 645 SIRILLAYAAHHSFRLFQMDVKSAFL 670
Score = 39.3 bits (90), Expect(2) = 1e-28
Identities = 20/64 (31%), Positives = 36/64 (56%)
Frame = -2
Query: 484 VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 305
+ +D + I+GD KG+ TRS+++ + ++S I P +EAL D W AM+
Sbjct: 519 IQRDHPVDQILGDISKGVTTRSRLANFCEHYSFVS----SIEPFRVEEALLDPDWVLAMQ 574
Query: 304 DEID 293
+E++
Sbjct: 575 EELN 578
>gb|AEJ07909.1| Opie1 putative pol protein [Zea luxurians]
Length = 830
Score = 113 bits (283), Expect(2) = 2e-28
Identities = 56/86 (65%), Positives = 67/86 (77%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR + NV+ KWVFRNK DE G R +AR+VAKGY QVAG+D+EETFAPVARLE
Sbjct: 569 WTLVPRPKQ-NVVGTKWVFRNKQDEHGVVMRNKARLVAKGYAQVAGLDFEETFAPVARLE 627
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+A AA + +LYQMDVK AFL
Sbjct: 628 SIRILLAYAAHHSFRLYQMDVKSAFL 653
Score = 38.1 bits (87), Expect(2) = 2e-28
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = -2
Query: 484 VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 305
+ +D + I+GD KG+ TRS++ + ++S I P +EAL D W AM+
Sbjct: 502 IQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVS----SIEPFRVEEALLDPDWVLAMQ 557
Query: 304 DEID 293
+E++
Sbjct: 558 EELN 561
>gb|AAN40035.1| putative gag-pol polyprotein [Zea mays]
Length = 1706
Score = 106 bits (265), Expect(2) = 2e-28
Identities = 53/86 (61%), Positives = 64/86 (74%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR ++ NV+ KWVFRNK DE G R +AR+VAKGY QV G+D+ ET+APVARLE
Sbjct: 1430 WHLVPRPNQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLE 1488
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+A A KLYQMDVK AFL
Sbjct: 1489 SIRILLAYATYHGFKLYQMDVKSAFL 1514
Score = 44.7 bits (104), Expect(2) = 2e-28
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = -2
Query: 505 PEKSFPRV----TKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEA 338
P PRV +D + I+GD +KG+ TRS+++ + ++S I P +EA
Sbjct: 1352 PRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVS----SIEPHRVEEA 1407
Query: 337 LKDDGWKAAMKDEID 293
L+D W AM++E++
Sbjct: 1408 LQDSDWVVAMQEELN 1422
>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
Length = 1063
Score = 106 bits (265), Expect(2) = 2e-28
Identities = 53/86 (61%), Positives = 64/86 (74%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR ++ NV+ KWVFRNK DE G R +AR+VAKGY QV G+D+ ET+APVARLE
Sbjct: 583 WHLVPRPNQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLE 641
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+A A KLYQMDVK AFL
Sbjct: 642 SIRILLAYATYHGFKLYQMDVKSAFL 667
Score = 44.7 bits (104), Expect(2) = 2e-28
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = -2
Query: 505 PEKSFPRV----TKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEA 338
P PRV +D + I+GD +KG+ TRS+++ + ++S I P +EA
Sbjct: 505 PRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVS----SIEPHRVEEA 560
Query: 337 LKDDGWKAAMKDEID 293
L+D W AM++E++
Sbjct: 561 LQDSDWVVAMQEELN 575
>gb|ABF67921.1| Ji1 putative pol protein [Zea mays]
Length = 1063
Score = 106 bits (265), Expect(2) = 2e-28
Identities = 53/86 (61%), Positives = 64/86 (74%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR ++ NV+ KWVFRNK DE G R +AR+VAKGY QV G+D+ ET+APVARLE
Sbjct: 583 WHLVPRPNQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLE 641
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+A A KLYQMDVK AFL
Sbjct: 642 SIRILLAYATYHGFKLYQMDVKSAFL 667
Score = 44.7 bits (104), Expect(2) = 2e-28
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = -2
Query: 505 PEKSFPRV----TKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEA 338
P PRV +D + I+GD +KG+ TRS+++ + ++S I P +EA
Sbjct: 505 PRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVS----SIEPHRVEEA 560
Query: 337 LKDDGWKAAMKDEID 293
L+D W AM++E++
Sbjct: 561 LQDSDWVVAMQEELN 575
>gb|AAL75488.1|AF466202_14 putative pol protein [Zea mays]
Length = 800
Score = 106 bits (265), Expect(2) = 2e-28
Identities = 53/86 (61%), Positives = 64/86 (74%)
Frame = -1
Query: 260 WVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLE 81
W LVPR ++ NV+ KWVFRNK DE G R +AR+VAKGY QV G+D+ ET+APVARLE
Sbjct: 362 WHLVPRPNQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLE 420
Query: 80 AVRTLIALAARLNIKLYQMDVKGAFL 3
++R L+A A KLYQMDVK AFL
Sbjct: 421 SIRILLAYATYHGFKLYQMDVKSAFL 446
Score = 44.7 bits (104), Expect(2) = 2e-28
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = -2
Query: 505 PEKSFPRV----TKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEA 338
P PRV +D + I+GD +KG+ TRS+++ + ++S I P +EA
Sbjct: 284 PRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVS----SIEPHRVEEA 339
Query: 337 LKDDGWKAAMKDEID 293
L+D W AM++E++
Sbjct: 340 LQDSDWVVAMQEELN 354