BLASTX nr result
ID: Ephedra27_contig00024175
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00024175
(759 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI37296.3| unnamed protein product [Vitis vinifera] 75 7e-24
ref|XP_002064813.1| GK15001 [Drosophila willistoni] gi|194160898... 72 2e-21
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera] 81 4e-21
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera] 75 6e-20
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera] 64 1e-19
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera] 63 2e-19
emb|CAB75932.1| putative protein [Arabidopsis thaliana] 64 2e-19
gb|EFA05312.1| hypothetical protein TcasGA2_TC015470 [Tribolium ... 70 2e-19
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera] 65 2e-19
pir||B84500 probable retroelement pol polyprotein [imported] - A... 68 2e-19
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] 64 5e-19
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 62 1e-18
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi... 62 1e-18
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ... 66 2e-18
pir||S00954 pol polyprotein - fruit fly (Drosophila melanogaster... 62 2e-18
ref|XP_003376808.1| retrovirus-related Pol polyprotein from tran... 64 2e-18
ref|XP_003376336.1| retrovirus-related Pol polyprotein from tran... 63 4e-18
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 62 5e-18
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc... 62 1e-17
gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsi... 67 2e-17
>emb|CBI37296.3| unnamed protein product [Vitis vinifera]
Length = 3048
Score = 75.1 bits (183), Expect(2) = 7e-24
Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 10/186 (5%)
Frame = -1
Query: 759 VKTAGQETLPVKGYGDITLNFGTSKIILKDALYVEGLRKNLISLYKLLTQKYNMFAFLRE 580
VK ++ V G G++ L I+ YV L+ NL+S+ +L + + L +
Sbjct: 348 VKLGNNTSMSVLGKGNVRLKVNEMTQIITGVFYVPELKNNLLSIGQLQEKGLTI---LFQ 404
Query: 579 NGETCCRIYYNQKIIAEGT**--NGLFVM----EPMKAECYLT-NEEIFNLWHNRLGHIS 421
+G+ C+++++QK + T N +F++ +P+ + C+ T E+I LWH R GH+S
Sbjct: 405 HGK--CKVFHSQKGLIMDTKMSSNRMFMLYALSQPISSTCFNTVTEDILQLWHCRYGHLS 462
Query: 420 NVYLDKMEAT--VSHGPKNLTPTKKCNNYLVAKLHRKPFKNRTKI-TNQCLEIVHLDLCE 250
L ++ V+ P+ P+K C + LV K HR ++ + L++VH D+C
Sbjct: 463 FQGLKTLQQRKMVNGLPQFQPPSKLCKDCLVGKQHRSSIPKKSNWRAAEILQLVHADICG 522
Query: 249 PITPIT 232
PI PI+
Sbjct: 523 PINPIS 528
Score = 62.4 bits (150), Expect(2) = 7e-24
Identities = 30/74 (40%), Positives = 45/74 (60%)
Frame = -3
Query: 223 ERYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXX 44
+RY+LTF+DD+S+ TW + L +KSE F F F+ V+ + +S + CLRTD G
Sbjct: 532 KRYLLTFTDDFSRKTWVYFLVEKSEAFAVFKSFKTYVEKETSSFLRCLRTDRGGEFTSQE 591
Query: 43 XXXFYEKKGIKREL 2
F + GI+R+L
Sbjct: 592 FAIFCDVHGIRRQL 605
>ref|XP_002064813.1| GK15001 [Drosophila willistoni] gi|194160898|gb|EDW75799.1| GK15001
[Drosophila willistoni]
Length = 1249
Score = 71.6 bits (174), Expect(2) = 2e-21
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 4/167 (2%)
Frame = -1
Query: 735 LPVKGYGDITLNFGTSKIILKDALYVEGLRKNLISLYKLLTQKYNMFAFLRENGETCCRI 556
L +G G +T+ G K+ + + LYV GL N +S+ +++ +YN ++ +I
Sbjct: 304 LRAEGKGKVTIRTGICKLTMNNVLYVPGLAGNFMSVARVI--EYNSVVHFEKH---MAKI 358
Query: 555 YYNQKIIAEGT**NGLFVMEPMKAECYLTNEEIFNLWHNRLGHISNVYLDKMEA---TVS 385
N + I + LFV E + E +LWH R GH++ L ++ +
Sbjct: 359 IQNGECILKAKKIGNLFVFEAESENLFAAVGEDVSLWHKRFGHLNYKSLTQIASKGLVRG 418
Query: 384 HGPKNLTPTKKCNNYLVAKLHRKPFKNRTKI-TNQCLEIVHLDLCEP 247
N P C +V+K+H +PF T+ +++ L++VH D+C P
Sbjct: 419 LSVTNFAPNTPCKTCMVSKIHVQPFPKMTESRSSELLQLVHSDVCGP 465
Score = 57.4 bits (137), Expect(2) = 2e-21
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = -3
Query: 220 RYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXXX 41
RY LTF DD S+ + + LK K EVF F+ F+ V+ + K+ C+R+DNG
Sbjct: 475 RYFLTFIDDKSRRIFVYFLKGKDEVFGKFLEFKSLVERQTGKKLKCIRSDNGREYVNNAF 534
Query: 40 XXFYEKKGIKREL 2
+ +K GI R+L
Sbjct: 535 DDYLKKNGILRQL 547
>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
Length = 1285
Score = 80.9 bits (198), Expect(2) = 4e-21
Identities = 58/186 (31%), Positives = 93/186 (50%), Gaps = 23/186 (12%)
Frame = -1
Query: 729 VKGYGDITLNFGTSKII-LKDALYVEGLRKNLISLYKLLTQKYNMFAFLRENGETCCRIY 553
V G+I LNF ++I+ LK+ LYV +R+NLIS+ L Y++ E + I
Sbjct: 301 VLAVGNIALNFKNNRILSLKNVLYVPSIRRNLISVSSLSKNGYSVC--FNEFYDDSVVIK 358
Query: 552 YNQKIIAEGT**NGLFVMEPMKAECYLTNEEIFN-------------------LWHNRLG 430
+ ++II G+ +GL++++ + E LTN E+ N LWH RLG
Sbjct: 359 FREQIICSGSLIDGLYILK-VTPELQLTNSEVNNFDIVAPLKRKCPIELSYTYLWHLRLG 417
Query: 429 HISNVYLDKMEATVSHGPKNLTPTKK---CNNYLVAKLHRKPFKNRTKITNQCLEIVHLD 259
HI+ LD++ V GP + + C + L K+ +PF + N LE++H D
Sbjct: 418 HIN---LDRISLLVKDGPLSSLKVEALPTCESCLEGKMTNRPFPLKGNRANDVLELIHSD 474
Query: 258 LCEPIT 241
LC P++
Sbjct: 475 LCGPMS 480
Score = 47.4 bits (111), Expect(2) = 4e-21
Identities = 24/72 (33%), Positives = 39/72 (54%)
Frame = -3
Query: 217 YILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXXXX 38
Y +TF+ DYS+ + +LL++KSE FE F F+ + + I LR+D+G
Sbjct: 489 YFVTFTYDYSRYGYIYLLRRKSECFEKFKAFKAETEKRHGKYIKTLRSDHGGEYISREFI 548
Query: 37 XFYEKKGIKREL 2
F ++GI +L
Sbjct: 549 TFLSEQGITSQL 560
>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 75.1 bits (183), Expect(2) = 6e-20
Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 23/186 (12%)
Frame = -1
Query: 729 VKGYGDITLNFGTSK-IILKDALYVEGLRKNLISLYKLLTQKYNMFAFLRENGETCCRIY 553
V G+I LNF ++ + LK+ LYV +R+NLI + L Y++ E + I
Sbjct: 653 VLAVGNIALNFKNNRTLFLKNVLYVPSIRRNLIPISSLSKNGYSVC--FNEFYDDSVVIK 710
Query: 552 YNQKIIAEGT**NGLFVMEPMKAECYLTNEEIFN-------------------LWHNRLG 430
+ +++I G+ + L++++ + E LTN E+ N LWH RLG
Sbjct: 711 FREQMICSGSLIDSLYILK-VTPELQLTNSEVNNFDIVAPLKRKRPIELSYTYLWHLRLG 769
Query: 429 HISNVYLDKMEATVSHGPKNLTPTKK---CNNYLVAKLHRKPFKNRTKITNQCLEIVHLD 259
HI+ LD++ V GP + + C + L K+ ++PF + N LE++H D
Sbjct: 770 HIN---LDRISLLVKDGPLSSLKVEALPTCESCLEGKMTKRPFPLKGNRANDVLELIHSD 826
Query: 258 LCEPIT 241
LC P++
Sbjct: 827 LCGPMS 832
Score = 49.3 bits (116), Expect(2) = 6e-20
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = -3
Query: 217 YILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXXXX 38
Y +TF+DDYS+ + +LL +KSE FE F F+ ++ + I LR+D+G
Sbjct: 841 YFVTFTDDYSRYGYIYLLCRKSECFEKFKAFKAEMEQRHGKYIKTLRSDHGGEYISREFI 900
Query: 37 XFYEKKGIKREL 2
F ++GI +L
Sbjct: 901 TFLSEQGITSQL 912
>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
Length = 1274
Score = 63.9 bits (154), Expect(2) = 1e-19
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 15/187 (8%)
Frame = -1
Query: 759 VKTAGQETLPVKGYGDITLNFGTSKI-ILKDALYVEGLRKNLISLYKLLTQKYNMFAFLR 583
VK + + V+G G + +N G + +L + ++ L +NL+S+ +L+ Y++
Sbjct: 334 VKLGDDKQVXVEGKGIMAVNNGHGNVKLLYNVYFIPSLTQNLLSVGQLMVSGYSILF--- 390
Query: 582 ENGETCC-------RIYYNQKIIAEGT**NGLFVMEPMKAECYL-----TNEEIFNLWHN 439
+G TC +I N ++ A N LF +E E + T+E NLWH
Sbjct: 391 -DGATCVIKDKKSDQIIVNVRMAA-----NKLFPLEVSSIEKHALVVKETSES--NLWHL 442
Query: 438 RLGHISNVYLDKM-EATVSHGPKNLTPTKKCNNYLVAKLHRKPF-KNRTKITNQCLEIVH 265
R GH++ L + + + G + C + K +KPF K R++ + CLEI+H
Sbjct: 443 RYGHLNVKGLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASSCLEIIH 502
Query: 264 LDLCEPI 244
DLC P+
Sbjct: 503 ADLCGPM 509
Score = 59.3 bits (142), Expect(2) = 1e-19
Identities = 29/73 (39%), Positives = 43/73 (58%)
Frame = -3
Query: 220 RYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXXX 41
RY L F+DD+S+M+W + L+ K+E FE+F F+ V+ + I LRTD G
Sbjct: 518 RYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDF 577
Query: 40 XXFYEKKGIKREL 2
F E++G+ REL
Sbjct: 578 KVFCEEEGLHREL 590
>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
Length = 1472
Score = 63.2 bits (152), Expect(2) = 2e-19
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Frame = -1
Query: 759 VKTAGQETLPVKGYGDITLNFGTSKI-ILKDALYVEGLRKNLISLYKLLTQKYNMFAFLR 583
VK + + V+G G +N G + +L + ++ L +NL+S+ +L+ Y++
Sbjct: 319 VKLGDDKQVQVEGKGTXAVNNGHGNVKLLYNVYFIPSLTQNLLSVGQLMVSGYSILF--- 375
Query: 582 ENGETCC-------RIYYNQKIIAEGT**NGLFVMEPMKAECYL-----TNEEIFNLWHN 439
+G TC +I + ++ A N LF +E E + T+E NLWH
Sbjct: 376 -DGATCVIKDKKSDQIIVBVRMAA-----NKLFPLEVSSIEKHALVVKETSES--NLWHL 427
Query: 438 RLGHISNVYLDKM-EATVSHGPKNLTPTKKCNNYLVAKLHRKPF-KNRTKITNQCLEIVH 265
R GH++ L + + + G + C + K +KPF K R++ + CLEI+H
Sbjct: 428 RYGHLNVKGLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASSCLEIIH 487
Query: 264 LDLCEPI 244
DLC P+
Sbjct: 488 ADLCGPM 494
Score = 59.7 bits (143), Expect(2) = 2e-19
Identities = 29/73 (39%), Positives = 43/73 (58%)
Frame = -3
Query: 220 RYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXXX 41
RY L F+DD+S+M+W + L+ K+E FE+F F+ V+ + I LRTD G
Sbjct: 503 RYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDF 562
Query: 40 XXFYEKKGIKREL 2
F E++G+ REL
Sbjct: 563 KVFXEEEGLHREL 575
>emb|CAB75932.1| putative protein [Arabidopsis thaliana]
Length = 1339
Score = 63.9 bits (154), Expect(2) = 2e-19
Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 12/188 (6%)
Frame = -1
Query: 759 VKTAGQETLPVKGYGDITLNFGTSKIILKDALYVEGLRKNLISLYKLLTQKYNMFAFLRE 580
VK + V G G + + ++ + YV LR NL+SL +L Q+ + +R+
Sbjct: 328 VKLGNDTRMSVVGKGSVKVKVNGVTQVIPEVYYVPELRNNLLSLGQL--QERGLAILIRD 385
Query: 579 NGETCCRIYYNQKIIAEGT**NG-----LFVMEPMKAECYLTNEEIFN----LWHNRLGH 427
C++Y+ K T +G L +P K L EE+ + LWH R GH
Sbjct: 386 G---TCKVYHPSKGAIMETNMSGNRMFFLLASKPQKNSLCLQTEEVMDKENHLWHCRFGH 442
Query: 426 ISNVYLDKM-EATVSHGPKNLTPTKK-CNNYLVAKLHRKPFKNRTKITNQC-LEIVHLDL 256
++ L + + G L TK+ C L K HR+ +T + L++VH D+
Sbjct: 443 LNQEGLKLLAHKKMVIGLPILKATKEICAICLTGKQHRESMSKKTSWKSSTQLQLVHSDI 502
Query: 255 CEPITPIT 232
C PITPI+
Sbjct: 503 CGPITPIS 510
Score = 58.9 bits (141), Expect(2) = 2e-19
Identities = 28/74 (37%), Positives = 43/74 (58%)
Frame = -3
Query: 223 ERYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXX 44
+RYIL+F DD+++ TW + L +KSE F +F +F+ V+ + + + CLRTD G
Sbjct: 514 KRYILSFIDDFTRKTWVYFLHEKSEAFATFKIFKASVEKEIGAFLTCLRTDRGGEFTSNE 573
Query: 43 XXXFYEKKGIKREL 2
F GI R+L
Sbjct: 574 FGEFCRSHGISRQL 587
>gb|EFA05312.1| hypothetical protein TcasGA2_TC015470 [Tribolium castaneum]
Length = 2375
Score = 70.5 bits (171), Expect(2) = 2e-19
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 13/177 (7%)
Frame = -1
Query: 711 ITLNFGTSKIILKDALYVEGLRKNLISLYKLLTQKYNMFAFLRENGETCCRIYYNQKIIA 532
+ +N ++ +K+ LYV+ L+ NL+S+ K+ N+ E+G+ I N K++A
Sbjct: 318 LRVNNTVTRATIKNVLYVKNLKHNLLSVQKIELASLNVSF---EHGKVV--IKRNSKVLA 372
Query: 531 EGT**NGLF-VMEPMKAECYLTNEEI------FNLWHNRLGHISNVYL-----DKMEATV 388
EG + L+ + ++ +C + + LWH RLGH+SN L + M + +
Sbjct: 373 EGKRIDNLYEICFEVENKCKVVCSNVCEVSASLKLWHRRLGHLSNKNLVTLSKNNMVSGL 432
Query: 387 SHGPKNLTPTKKCNNYLVAKLHRKPFKNRT-KITNQCLEIVHLDLCEPITPITCD*K 220
+ N ++ C + +K+ + PF R+ T + LE++H DLC PITP T D K
Sbjct: 433 NIRNSNCNESQICEVCVKSKITKLPFGKRSDNKTTRVLELIHSDLCGPITPETHDGK 489
Score = 52.0 bits (123), Expect(2) = 2e-19
Identities = 30/70 (42%), Positives = 36/70 (51%)
Frame = -3
Query: 223 ERYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXX 44
+RY LTF DDY+ +LLK KSEVFE F F V +KI L+ DNG
Sbjct: 489 KRYFLTFLDDYTHFCVVYLLKSKSEVFEYFKCFESMVSAMFGTKIATLKCDNGREYLPND 548
Query: 43 XXXFYEKKGI 14
F + KGI
Sbjct: 549 LVSFCKGKGI 558
>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
Length = 1183
Score = 65.1 bits (157), Expect(2) = 2e-19
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 15/187 (8%)
Frame = -1
Query: 759 VKTAGQETLPVKGYGDITLNFGTSKI-ILKDALYVEGLRKNLISLYKLLTQKYNMFAFLR 583
VK + + V+G G + +N G + +L + ++ L +NL+S+ +L+ Y++
Sbjct: 268 VKLGDDKQVQVEGKGTVAVNNGHGNVKLLYNVYFIPSLTQNLLSVGQLMVSGYSILF--- 324
Query: 582 ENGETCC-------RIYYNQKIIAEGT**NGLFVMEPMKAECYL-----TNEEIFNLWHN 439
+G TC +I ++ ++ A N LF +E E + T+E NLWH
Sbjct: 325 -DGATCVIKDKKSDQIIFDVRMAA-----NKLFPLEVSSIEKHALVVKETSES--NLWHL 376
Query: 438 RLGHISNVYLDKM-EATVSHGPKNLTPTKKCNNYLVAKLHRKPF-KNRTKITNQCLEIVH 265
R GH++ L + + + G + C + K +KPF K R++ + CLEI+H
Sbjct: 377 RYGHLNVKGLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASSCLEIIH 436
Query: 264 LDLCEPI 244
DLC P+
Sbjct: 437 ADLCGPM 443
Score = 57.4 bits (137), Expect(2) = 2e-19
Identities = 28/73 (38%), Positives = 43/73 (58%)
Frame = -3
Query: 220 RYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXXX 41
RY L F++D+S+M+W + L+ K+E FE+F F+ V+ + I LRTD G
Sbjct: 452 RYFLLFTNDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDF 511
Query: 40 XXFYEKKGIKREL 2
F E++G+ REL
Sbjct: 512 KVFCEEEGLHREL 524
>pir||B84500 probable retroelement pol polyprotein [imported] - Arabidopsis
thaliana
Length = 616
Score = 67.8 bits (164), Expect(2) = 2e-19
Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 7/179 (3%)
Frame = -1
Query: 759 VKTAGQETLPVKGYGDITLNFGTSKIILKDALYVEGLRKNLISLYKLLTQKYNMFAFLRE 580
+K +E + + G GDIT+ K ++++ V GL KNL+S+ ++++ Y++ L E
Sbjct: 141 IKVGNREVVMIAGKGDITVCTSFRKKVIRNVFLVSGLEKNLLSVPQIISVGYSV---LFE 197
Query: 579 NGETCCRIYYNQKIIAEGT**NGLFVM---EPMKAECYLTNEEIFNLWHNRLGHISNVYL 409
N + C + K I E N F + ++E + EE LWH RLGH+ N +
Sbjct: 198 N-KCCTNLDRTGKKIMEIQRVNKSFPIRWNSSQESELVTSEEEGMELWHRRLGHVGNSRM 256
Query: 408 DKM--EATVSHGPKNLTPTKKCNNYLVAKLHRK--PFKNRTKITNQCLEIVHLDLCEPI 244
++M + V P + C + K R+ P +++TK T + LEIVH ++C P+
Sbjct: 257 EQMHNKKMVDGFPNFHVNKEICGVCKLGKQVREAFPTESQTK-TKEKLEIVHTNVCGPM 314
Score = 54.7 bits (130), Expect(2) = 2e-19
Identities = 28/72 (38%), Positives = 40/72 (55%)
Frame = -3
Query: 217 YILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXXXX 38
Y L DDY+ M W + LKQKSEVF F + V+T+ KI LR+D G
Sbjct: 324 YFLLLVDDYTHMAWIYFLKQKSEVFSVFKKSKALVETQSGKKIKRLRSDGGGEFTSSGFN 383
Query: 37 XFYEKKGIKREL 2
F +++GI+R++
Sbjct: 384 EFCDQEGIERQV 395
>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 63.5 bits (153), Expect(2) = 5e-19
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 6/177 (3%)
Frame = -1
Query: 759 VKTAGQETLPVKGYGDITLN-FGTSKIILKDALYVEGLRKNLISLYKLLTQKY-NMFAFL 586
VK V G GD+ L K++L+D +V +R NLIS+ KL + Y N F
Sbjct: 320 VKMGNANFSTVVGKGDVCLETMNGMKLLLRDVRHVPDMRLNLISVDKLDEEGYCNTF--- 376
Query: 585 RENGETCCRIYYNQKIIAEGT**NGLFVMEPMKAECYLT---NEEIFNLWHNRLGHISNV 415
NG+ ++ ++A GT + L+V + ++ + N+ LWH RLGH+S
Sbjct: 377 -HNGQW--KLTKGSLMVARGTKQSKLYVTQASISQQVINVAENDSNIKLWHRRLGHMSEK 433
Query: 414 YLDKMEATVSHGPKNLTPTKKCNNYLVAKLHRKPFKNRTKITNQ-CLEIVHLDLCEP 247
+ ++ + N KKC + L K +R FK Q L++VH D+C P
Sbjct: 434 SMARLVKKNALPGLNQIQLKKCADCLAGKQNRVSFKRFPPSRRQNVLDLVHSDVCGP 490
Score = 57.8 bits (138), Expect(2) = 5e-19
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = -3
Query: 220 RYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNG 65
RY +TF DD+S+ TW + LK K +VF+ F F V+ + K+ C+RTDNG
Sbjct: 499 RYFVTFIDDHSRKTWVYTLKTKDQVFQVFKQFLTLVERETGKKLKCIRTDNG 550
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 62.4 bits (150), Expect(2) = 1e-18
Identities = 30/73 (41%), Positives = 41/73 (56%)
Frame = -3
Query: 220 RYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXXX 41
RY LTF DD+S+MTW + LK KSEV F +F+ V+ + S+I LRTD G
Sbjct: 536 RYFLTFIDDFSRMTWVYFLKNKSEVITKFKIFKPYVENQSESRIKRLRTDGGGEFLSREF 595
Query: 40 XXFYEKKGIKREL 2
++ GI E+
Sbjct: 596 IKLCQESGIHHEI 608
Score = 57.8 bits (138), Expect(2) = 1e-18
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 7/168 (4%)
Frame = -1
Query: 726 KGYGDITLNFGTSKIILKDALYVEGLRKNLISLYKLLTQKYNMFAFLRENGETCCRIYYN 547
+G GDI ++ ++KD LYV L +NL+S+ ++++ Y + + E+ + +
Sbjct: 363 EGKGDIRVSTNKGDHVIKDVLYVPELARNLLSVSQMISNGYRV---IFEDNKCVIQDLKG 419
Query: 546 QKIIAEGT**NGL-FVMEPMKAECYLT---NEEIFNLWHNRLGHISNVYLDKMEA--TVS 385
+KI+ + + + E Y+ EE +LWH R GH++ ++ M+ V
Sbjct: 420 RKILDIKMKDRSFPIIWKKSREETYMAFEEKEEQTDLWHKRFGHVNYDKIETMQTLKIVE 479
Query: 384 HGPKNLTPTKKCNNYLVAKLHRKPFKNRTKI-TNQCLEIVHLDLCEPI 244
PK C + K R+ F +++ TN+ LE++H D+C P+
Sbjct: 480 KLPKFEVIKGICAACEMGKQSRRSFPKKSQSNTNKTLELIHSDVCGPM 527
>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 822
Score = 62.0 bits (149), Expect(2) = 1e-18
Identities = 32/73 (43%), Positives = 42/73 (57%)
Frame = -3
Query: 220 RYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXXX 41
RYILTF DD ++M W + LK KSEVF++F F+ V+ N +I LR D G
Sbjct: 239 RYILTFIDDATRMVWVYFLKAKSEVFQTFKKFKNLVENNANCRIKKLRIDRGTEYLSKEF 298
Query: 40 XXFYEKKGIKREL 2
F E GI+R+L
Sbjct: 299 SEFLEGNGIERQL 311
Score = 57.8 bits (138), Expect(2) = 1e-18
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 6/167 (3%)
Frame = -1
Query: 726 KGYGDITLNFGTSKIILKDALYVEGLRKNLISLYKLLTQKYNMFAFLRENGETCCRIYYN 547
+G GDI + K ++D L V L KNL+S+ +++ Y + L+ N C I+ +
Sbjct: 69 EGKGDIEVMTRKDKRGIRDVLLVPKLGKNLLSVPQMIINGYQV--TLKNN---YCTIHDS 123
Query: 546 -QKIIAEGT**NGLFVMEPMKAE--CYLTNEEIFNLWHNRLGHI--SNVYLDKMEATVSH 382
+K I E N F + + E + +E LWH RLGH SN+ + + + V+
Sbjct: 124 ARKKIGEVEMVNKSFHLRWLSNEETAMVAKDEATELWHKRLGHTGHSNLKILQSKEMVTG 183
Query: 381 GPKNLTPTKKCNNYLVAKLHRKPFKNRTKI-TNQCLEIVHLDLCEPI 244
PK KC + +++K R PF ++ LE++H D+C P+
Sbjct: 184 LPKFNVEEGKCESCILSKHSRDPFPKESETRAKHKLELIHSDVCGPM 230
>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1333
Score = 66.2 bits (160), Expect(2) = 2e-18
Identities = 33/73 (45%), Positives = 44/73 (60%)
Frame = -3
Query: 220 RYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXXX 41
RY L F+DDYS+ +W + LK KSE FE+F F+ V+ + +KI LRTD G
Sbjct: 523 RYFLMFTDDYSRFSWVYFLKFKSETFETFKKFKAFVENQSGNKIKSLRTDRGGEFLSNDF 582
Query: 40 XXFYEKKGIKREL 2
F E+ GI+REL
Sbjct: 583 NLFCEENGIRREL 595
Score = 53.1 bits (126), Expect(2) = 2e-18
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 10/182 (5%)
Frame = -1
Query: 759 VKTAGQETLPVKGYGDITLNFGTSKI-ILKDALYVEGLRKNLISLYKLLTQKYNMFAFL- 586
V+ + + ++G G + + + L D YV L NL+S+ +L+T Y++ +
Sbjct: 339 VRLGDDKQVHIEGKGTVEIKTVQGNVKFLYDVQYVPTLAHNLLSVGQLMTSGYSVVFYDN 398
Query: 585 ------RENGETCCRIYYNQKIIAEGT**NGLFVMEPMKAECYLTNEEIFNLWHNRLGHI 424
+E+G T R+ Q + L + + + + NLWH R GH+
Sbjct: 399 ACDIKDKESGRTIARVPMTQNKMFP------LDISNVGNSALVVKEKNETNLWHLRYGHL 452
Query: 423 SNVYLDKM-EATVSHGPKNLTPTKKCNNYLVAKLHRKPFK-NRTKITNQCLEIVHLDLCE 250
+ +L + + + G N+ C + K RK F ++ CLE+VH DLC
Sbjct: 453 NVNWLKLLVQKDMVIGLPNIKELDLCEGCIYGKQTRKSFPVGKSWRATTCLELVHADLCG 512
Query: 249 PI 244
P+
Sbjct: 513 PM 514
>pir||S00954 pol polyprotein - fruit fly (Drosophila melanogaster) transposon
1731 gi|8702|emb|CAA30503.1| unnamed protein product
[Drosophila melanogaster]
Length = 982
Score = 61.6 bits (148), Expect(2) = 2e-18
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 9/182 (4%)
Frame = -1
Query: 759 VKTAGQETLPVKGYGDITLNFGTSKIILKDALYVEGLRKNLISL-----YKLLTQKYNMF 595
+ AG L KG G + L ++L + L+V L N +S+ YK +
Sbjct: 40 ISLAGNGFLLAKGIGTVKLKTDLCTLVLNNVLFVPDLNGNFMSVSRAAQYKCFVNFGPHY 99
Query: 594 AFLRENGETCCRIYYNQKIIAEGT**NGLFVMEPMKAECYLTNEEIFNLWHNRLGHISNV 415
A + + GE R+ L++ + C+ + +LWH R GH++
Sbjct: 100 ADVIQEGERILRVMRA----------GNLYMFQGKHNSCFAAVDADGSLWHKRNGHLNTS 149
Query: 414 YLDKM-EATVSHGPKNLT--PTKKCNNYLVAKLHRKPFKNRTKI-TNQCLEIVHLDLCEP 247
L +M + +G + + P C ++AK+H +PF T+ + L+++H DLC P
Sbjct: 150 SLQEMVRKKMVYGVEKVVFKPDAVCKTCMLAKIHVQPFPKTTRSRAEELLDMIHSDLCGP 209
Query: 246 IT 241
+
Sbjct: 210 FS 211
Score = 57.8 bits (138), Expect(2) = 2e-18
Identities = 28/73 (38%), Positives = 42/73 (57%)
Frame = -3
Query: 220 RYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXXX 41
+Y LTF DD S+ + + L++K EVF FV F+K V+ + KI C+R+DNG
Sbjct: 219 KYFLTFIDDKSRRIFVYFLRKKDEVFTKFVEFKKLVERQTGRKIKCIRSDNGGEFVNNVF 278
Query: 40 XXFYEKKGIKREL 2
+ + GI R+L
Sbjct: 279 DDYLKAHGIARQL 291
>ref|XP_003376808.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trichinella spiralis] gi|316974460|gb|EFV57947.1|
retrovirus-related Pol polyprotein from transposon TNT
1-94 [Trichinella spiralis]
Length = 1324
Score = 63.9 bits (154), Expect(2) = 2e-18
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 9/181 (4%)
Frame = -1
Query: 759 VKTAGQETLPVKGYGDITLNFGTSK-IILKDALYVEGLRKNLISLYKLLTQKYNMFAFLR 583
V A + KG G + + T K ++ D + L NL+S+ ++ QK +
Sbjct: 319 VAIANGTNITTKGCGVVKIPLATKKTMVAHDVRHAPELALNLLSVSRIAAQKKTLI--FD 376
Query: 582 ENGETCCRIYY------NQKIIAEGT**NGLFVMEPMKAECYLTNEEIFNLWHNRLGHIS 421
ENG CRI Q I+ T NGL+ + + +T ++ +LWH RLGH+S
Sbjct: 377 ENG---CRIVDLAIEVPRQHILGTATQYNGLYRLNRCD-QWAMTVHDVPDLWHRRLGHLS 432
Query: 420 NVYLDKMEATVSHG-PKNLTPTKKCNNYLVAKLHRKPF-KNRTKITNQCLEIVHLDLCEP 247
+ ++ + G P + C L K R PF K+ TK + + LE+VH D+C P
Sbjct: 433 RGSMKLLQDGQATGIPSDAITKTDCVTCLKGKQCRLPFPKSATKRSKEVLELVHSDICGP 492
Query: 246 I 244
+
Sbjct: 493 M 493
Score = 55.1 bits (131), Expect(2) = 2e-18
Identities = 27/72 (37%), Positives = 41/72 (56%)
Frame = -3
Query: 220 RYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXXX 41
RY L+F DD+S+ ++ + LK K+EV F F V+ + + ++ CLRTDNG
Sbjct: 502 RYFLSFIDDFSRKSFVYFLKHKNEVLPKFKDFIAMVERQTSKRVKCLRTDNGREYVNNMF 561
Query: 40 XXFYEKKGIKRE 5
F +KGI+ E
Sbjct: 562 AEFLVRKGIRHE 573
>ref|XP_003376336.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trichinella spiralis] gi|316974954|gb|EFV58419.1|
retrovirus-related Pol polyprotein from transposon TNT
1-94 [Trichinella spiralis]
Length = 1003
Score = 62.8 bits (151), Expect(2) = 4e-18
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 9/181 (4%)
Frame = -1
Query: 759 VKTAGQETLPVKGYGDITLNFGTSK-IILKDALYVEGLRKNLISLYKLLTQKYNMFAFLR 583
V A + KG G + + T K ++ D + L NL+S+ ++ QK +
Sbjct: 12 VAIANGTNITTKGIGVVKIPLATEKTMVAHDVRHAPELALNLLSVSRIAAQKKTLI--FD 69
Query: 582 ENGETCCRIYY------NQKIIAEGT**NGLFVMEPMKAECYLTNEEIFNLWHNRLGHIS 421
ENG CRI Q I+ T NGL+ + + +T ++ +LWH +LGH+S
Sbjct: 70 ENG---CRIVDLAIEVPRQHILGTATQYNGLYRLNRCD-QWAMTVHDVPDLWHRQLGHLS 125
Query: 420 NVYLDKMEATVSHG-PKNLTPTKKCNNYLVAKLHRKPF-KNRTKITNQCLEIVHLDLCEP 247
+ ++ + G P + C L K R PF K+ TK + + LE+VH D+C P
Sbjct: 126 RGSMKLLQDGQATGIPSDAITKTDCVTCLKGKQCRLPFPKSATKRSKEVLELVHSDICGP 185
Query: 246 I 244
+
Sbjct: 186 M 186
Score = 55.5 bits (132), Expect(2) = 4e-18
Identities = 27/72 (37%), Positives = 41/72 (56%)
Frame = -3
Query: 220 RYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNGXXXXXXXX 41
RY L+F DD+S+ ++ + LK K+EV F F V+ + + ++ CLRTDNG
Sbjct: 195 RYFLSFIDDFSRKSFVYFLKHKNEVLSKFKDFIAMVERQTSKRVKCLRTDNGREYVNNMF 254
Query: 40 XXFYEKKGIKRE 5
F +KGI+ E
Sbjct: 255 AEFLVRKGIRHE 266
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 62.0 bits (149), Expect(2) = 5e-18
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 4/172 (2%)
Frame = -1
Query: 759 VKTAGQETLPVKGYGDITLNFGTSKIILKDALYVEGLRKNLISLYKLLTQKYNMFAFLRE 580
V++ GQ T+ + +G GT KI L++ YV LR+NLIS T + + E
Sbjct: 344 VESQGQGTIRIDTHG------GTIKI-LENVKYVPHLRRNLIS-----TGTLDKLGYRHE 391
Query: 579 NGETCCRIYYNQKIIAEGT**NGLFVMEPMKAECYLTNEEIFN----LWHNRLGHISNVY 412
GE R + N K G+ NGL+V++ L N E LWH+RLGH+S
Sbjct: 392 GGEGKVRYFKNNKTALRGSLSNGLYVLDGSTVMSELCNAETDKVKTALWHSRLGHMSMNN 451
Query: 411 LDKMEATVSHGPKNLTPTKKCNNYLVAKLHRKPFKNRTKITNQCLEIVHLDL 256
L + K + + C + ++ K + F + L VH DL
Sbjct: 452 LKVLAGKGLIDRKEINELEFCEHCVMGKSKKVSFNVGKHTSEDALSYVHADL 503
Score = 55.8 bits (133), Expect(2) = 5e-18
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = -3
Query: 247 NYTHNM*LERYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDN 68
N T ++ ++Y L+ DD ++ W + LK K E F+ F ++ V+ + N K+ CLRTDN
Sbjct: 508 NVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDN 567
Query: 67 GXXXXXXXXXXFYEKKGIKR 8
G + ++ GI+R
Sbjct: 568 GLEFCNSRFDSYCKEHGIER 587
>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1202
Score = 61.6 bits (148), Expect(2) = 1e-17
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 6/177 (3%)
Frame = -1
Query: 759 VKTAGQETLPVKGYGDITLNFGTSKIILKDALYVEGLRKNLISLYKLLTQKYNMFAFLRE 580
+ TA E + +K G + + + LK+ L+V KNL+S++KL+ Y AFL
Sbjct: 351 IHTASGEGMSIKHVGHAIVPTPSRPLHLKNVLHVPEAAKNLVSVHKLVADNY---AFLEI 407
Query: 579 NGET-CCRIYYNQKIIAEGT**NGLFVMEPMKAECYLTNEEI----FNLWHNRLGHISN- 418
+G+ + ++ I EG GL+ P+ A L + F WH RLGH S
Sbjct: 408 HGKYFLIKDKATRRTILEGPCRRGLY---PLPARSSLRQAFVATPSFVRWHGRLGHPSKP 464
Query: 417 VYLDKMEATVSHGPKNLTPTKKCNNYLVAKLHRKPFKNRTKITNQCLEIVHLDLCEP 247
+ L + N C+ AK H+ PF T ++N LE++H D+ P
Sbjct: 465 IVLRILSQNKLPCLSNSVNESVCDACQQAKCHQLPFPRSTSVSNNPLELIHSDVWGP 521
Score = 54.7 bits (130), Expect(2) = 1e-17
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = -3
Query: 223 ERYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLRTDNG 65
++Y ++F DDYSK W + LK KSEVF+ F F+K V+ + + KI+ ++TD G
Sbjct: 529 KKYYVSFIDDYSKFVWIYFLKHKSEVFQKFHEFQKLVEWQFDRKILSMQTDWG 581
>gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1347
Score = 67.0 bits (162), Expect(2) = 2e-17
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 6/178 (3%)
Frame = -1
Query: 759 VKTAGQETLPVKGYGDITLNFGTSKIILKDALYVEGLRKNLISLYKLLTQKYNMFAFLRE 580
++ + + G GDIT+ K I+K+ V GL KNL+S+ ++++ Y ++R
Sbjct: 354 IRVRNGDIVMTAGKGDITVMTRHGKRIIKNVFLVPGLEKNLLSVPQIISSGY----WVRF 409
Query: 579 NGETCCRIYYNQKII--AEGT**NGLFVMEPMKAECYLTNEEIFNLWHNRLGHISNVYLD 406
+ C N K I E T + + ++ E N + WH RLGH+SN L
Sbjct: 410 QDKRCIIQDANGKEIMNIEMTDKSFKIKLSSVEEEAMTANVQTEETWHKRLGHVSNKRLQ 469
Query: 405 KME--ATVSHGPKNLTPTKKCNNYLVAKLHRKPF--KNRTKITNQCLEIVHLDLCEPI 244
+M+ V+ P+ + C + K RK F +++TK T + LEIVH D+C P+
Sbjct: 470 QMQDKELVNGLPRFKVTKETCKACNLGKQSRKSFPKESQTK-TREKLEIVHTDVCGPM 526
Score = 48.9 bits (115), Expect(2) = 2e-17
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = -3
Query: 220 RYILTFSDDYSKMTWCFLLKQKSEVFESFVMFRKRVQTKKNSKIMCLR 77
RY + F DDY+ M W + LKQKSE F +F F+ V+ + N I LR
Sbjct: 535 RYYVLFLDDYTHMCWVYFLKQKSETFATFKKFKALVEKQSNCSIKTLR 582