BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00024132
         (819 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   205   3e-64
gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de...   206   1e-63
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de...   205   1e-63
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   202   4e-63
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola...   202   4e-63
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   202   6e-63
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       201   7e-63
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   201   2e-62
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   193   3e-62
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   199   3e-62
ref|XP_006469266.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   193   3e-62
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   192   8e-62
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   189   1e-61
gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tu...   197   1e-61
emb|CBI26820.3| unnamed protein product [Vitis vinifera]              189   1e-61
gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum de...   197   1e-61
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   196   2e-61
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   188   3e-61
ref|XP_006388173.1| hypothetical protein POPTR_0303s002201g, par...   196   3e-61
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       204   4e-61

>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  205 bits (522), Expect(2) = 3e-64
 Identities = 97/164 (59%), Positives = 132/164 (80%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            E+++E+F NY++NDS+GII+  H VFAD + +MA SD C KLA+LF++AVDFPKTGVPA+
Sbjct: 841  EEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAE 900

Query: 638  IPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRD 459
            IPS L P+EYPDFM+K DK +YIS+RVIGKL+R VKD A Q+ +I++FT++VA ++YD D
Sbjct: 901  IPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDAD 960

Query: 458  LEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            +EV  ++DYID AF  K  YD+ L ++M  YGI+ EAEI+SG I
Sbjct: 961  MEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1004



 Score = 67.4 bits (163), Expect(2) = 3e-64
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
 Frame = -3

Query: 301  ETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 131
            E R+WF    D+ ++       ASAWYH+TYHP YWG Y +      +  H ISFPW VY
Sbjct: 1030 EARAWFKRRNDIDDMLPK----ASAWYHVTYHPTYWGCYNQG----LKRAHFISFPWCVY 1081

Query: 130  DKLLRIKRNKTR 95
            D+L++IK++K R
Sbjct: 1082 DQLIQIKKDKAR 1093


>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1139

 Score =  206 bits (523), Expect(2) = 1e-63
 Identities = 99/164 (60%), Positives = 131/164 (79%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            E+++E+F NY++NDS+GII+  H VFAD + +MA SD C KLA+LF++AVDFPKTGVPA+
Sbjct: 866  EEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAE 925

Query: 638  IPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRD 459
            IPS L P+EYPDFM+K DK TYIS+RVIGKL+R VKD A Q+ +I+ FT++VA ++YD D
Sbjct: 926  IPSQLRPKEYPDFMDKPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDVD 985

Query: 458  LEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            LEV  ++DYID AF  K  YD+ L ++M  YGI+ EAEI+SG I
Sbjct: 986  LEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1029



 Score = 65.1 bits (157), Expect(2) = 1e-63
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
 Frame = -3

Query: 301  ETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 131
            E R+WF    D+ ++       ASAWYH+TYHP YWG Y +      +  H ISFPW VY
Sbjct: 1055 EARTWFKRRNDIDDMLPK----ASAWYHVTYHPTYWGCYNQG----LKRDHFISFPWCVY 1106

Query: 130  DKLLRIKRNK 101
            D+L++IK+ K
Sbjct: 1107 DQLIQIKKEK 1116


>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1180

 Score =  205 bits (522), Expect(2) = 1e-63
 Identities = 98/164 (59%), Positives = 131/164 (79%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            ++++E+F NY++NDS+GII+  H VFAD + +MA SD C KLA+LF++AVDFPKTGVPA+
Sbjct: 907  QEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAE 966

Query: 638  IPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRD 459
            IPS L P+EYPDFM+K DK TYIS+RVIGKL+R VKD A Q+ +I+ FT++VA ++YD D
Sbjct: 967  IPSQLRPKEYPDFMDKPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDAD 1026

Query: 458  LEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            LEV  ++DYID AF  K  YD+ L ++M  YGI+ EAEI+SG I
Sbjct: 1027 LEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1070



 Score = 65.1 bits (157), Expect(2) = 1e-63
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
 Frame = -3

Query: 301  ETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 131
            E R+WF    D+ ++       ASAWYH+TYHP YWG Y +      +  H ISFPW VY
Sbjct: 1096 EARTWFKRRNDIDDMLPK----ASAWYHVTYHPTYWGCYNQG----LKRDHFISFPWCVY 1147

Query: 130  DKLLRIKRNK 101
            D+L++IK+ K
Sbjct: 1148 DQLIQIKKEK 1157


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  202 bits (513), Expect(2) = 4e-63
 Identities = 99/165 (60%), Positives = 131/165 (79%), Gaps = 1/165 (0%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            E+++E+F NY++NDS+GII+  H VFAD + +MA SD C KLA+LF++AVDFPKTGVPA+
Sbjct: 841  EEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAE 900

Query: 638  IPSDLVPREYPDFMEK-EDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDR 462
            IPS L P+EYPDFM+K  DK TYIS+RVIGKL+R VKD A Q+ +I+ FT++VA ++YD 
Sbjct: 901  IPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDA 960

Query: 461  DLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            DLEV  ++DYID AF  K  YD+ L ++M  YGI+ EAEI+SG I
Sbjct: 961  DLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1005



 Score = 67.0 bits (162), Expect(2) = 4e-63
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = -3

Query: 301  ETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 131
            E R+WF    D+ ++       ASAWYH+TYHP YWG Y +      +  H ISFPW VY
Sbjct: 1031 EARTWFKRRNDIDDMLPK----ASAWYHVTYHPTYWGCYNQG----LKRDHFISFPWCVY 1082

Query: 130  DKLLRIKRNKTR 95
            D+L++IK+ K R
Sbjct: 1083 DQLIQIKKEKAR 1094


>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  202 bits (513), Expect(2) = 4e-63
 Identities = 99/165 (60%), Positives = 131/165 (79%), Gaps = 1/165 (0%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            E+++E+F NY++NDS+GII+  H VFAD + +MA SD C KLA+LF++AVDFPKTGVPA+
Sbjct: 689  EEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAE 748

Query: 638  IPSDLVPREYPDFMEK-EDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDR 462
            IPS L P+EYPDFM+K  DK TYIS+RVIGKL+R VKD A Q+ +I+ FT++VA ++YD 
Sbjct: 749  IPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDA 808

Query: 461  DLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            DLEV  ++DYID AF  K  YD+ L ++M  YGI+ EAEI+SG I
Sbjct: 809  DLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 853



 Score = 67.0 bits (162), Expect(2) = 4e-63
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = -3

Query: 301  ETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 131
            E R+WF    D+ ++       ASAWYH+TYHP YWG Y +      +  H ISFPW VY
Sbjct: 879  EARTWFKRRNDIDDMLPK----ASAWYHVTYHPTYWGCYNQG----LKRDHFISFPWCVY 930

Query: 130  DKLLRIKRNKTR 95
            D+L++IK+ K R
Sbjct: 931  DQLIQIKKEKAR 942


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  202 bits (513), Expect(2) = 6e-63
 Identities = 96/164 (58%), Positives = 130/164 (79%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            E+++E+F NY++NDS+GII+  H VFAD + +MA SD C +LAQLF++AVDFPKTGVPA+
Sbjct: 844  EEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAE 903

Query: 638  IPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRD 459
            IPS L P+EYPDFMEK DKPTY S++VIGKL++ VKD   Q+ +I++FT +VA K+YD D
Sbjct: 904  IPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARKSYDGD 963

Query: 458  LEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            + V  ++DYID AF  K+ YD+ L ++M  YGI+ EAEI+SG I
Sbjct: 964  MIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGI 1007



 Score = 66.6 bits (161), Expect(2) = 6e-63
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
 Frame = -3

Query: 301  ETRSWFD--ADVRELEANEYDLASAWYHITYHPYYWGYGENDDSDYRNPHLISFPWTVYD 128
            E R+WF   +D+ ++ A     ASAWYH+TYH  YWG+    +   +  H ISFPW +YD
Sbjct: 1033 EARTWFKRRSDIDDMLAK----ASAWYHVTYHHTYWGF---YNEGLKRDHFISFPWCIYD 1085

Query: 127  KLLRIKRNKTR 95
            +L++IK+ K R
Sbjct: 1086 QLIQIKKAKAR 1096


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  201 bits (512), Expect(2) = 7e-63
 Identities = 95/164 (57%), Positives = 131/164 (79%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            E+++E+F NY++NDS+GII+  H VFAD + +MA SD C +LAQLF++AVDFPKTGVPA+
Sbjct: 843  EEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAE 902

Query: 638  IPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRD 459
            IPS L P+EYPDFMEK DKPTY S++VIGKL++ VK+   Q+ +I++FT++VA K+YD D
Sbjct: 903  IPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVARKSYDSD 962

Query: 458  LEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            + V  ++DYID AF  K+ YD+ L ++M  YGI+ EAEI+SG I
Sbjct: 963  MIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGI 1006



 Score = 66.6 bits (161), Expect(2) = 7e-63
 Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
 Frame = -3

Query: 301  ETRSWFD--ADVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 131
            E R+WF   +D+ ++ A     ASAWYH+TYH  YWG Y E    D    H ISFPW VY
Sbjct: 1032 EARAWFKRRSDIDDMLAK----ASAWYHVTYHHTYWGLYNEGLKRD----HFISFPWCVY 1083

Query: 130  DKLLRIKRNKTR 95
            D+L++IK+ K R
Sbjct: 1084 DQLIQIKKAKAR 1095


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  201 bits (512), Expect(2) = 2e-62
 Identities = 99/165 (60%), Positives = 130/165 (78%), Gaps = 1/165 (0%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            E+++E+F NY++NDS+GII+  H VFAD + +MA SD C KLA+LF++AVDFPKTGVPA+
Sbjct: 841  EEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAE 900

Query: 638  IPSDLVPREYPDFMEK-EDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDR 462
            IPS L P+EYPDFM+K  DK TYIS+RVIGKLYR VKD A Q+ + + FT++VA ++YD 
Sbjct: 901  IPSQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDA 960

Query: 461  DLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            DLEV  ++DYID AF  K  YD+ L ++M  YGI+ EAEI+SG I
Sbjct: 961  DLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1005



 Score = 65.1 bits (157), Expect(2) = 2e-62
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
 Frame = -3

Query: 301  ETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 131
            E R+WF    D+ ++       ASAWYH+TYHP YWG Y +      +  H ISFPW VY
Sbjct: 1031 EARTWFKRRNDIDDMLPK----ASAWYHVTYHPTYWGCYNQG----LKRDHFISFPWCVY 1082

Query: 130  DKLLRIKRNK 101
            D+L++IK+ K
Sbjct: 1083 DQLIQIKKEK 1092


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  193 bits (491), Expect(2) = 3e-62
 Identities = 95/164 (57%), Positives = 125/164 (76%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            ED++E+F NY++NDS+GII+  HTVFAD +   ARS+ CL+LA+ F++AVDFPKTGVPA+
Sbjct: 858  EDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQLAEKFSIAVDFPKTGVPAE 917

Query: 638  IPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRD 459
            IP  L  +EYPDFMEK DKPTY S+ VIGKL+RAVKD A  +  I  FTKEVA ++YD D
Sbjct: 918  IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPD 977

Query: 458  LEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            +EV  ++D+ID A   K  YD  L ++M  YGI+ EAEI++G+I
Sbjct: 978  MEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSI 1021



 Score = 72.8 bits (177), Expect(2) = 3e-62
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
 Frame = -3

Query: 301  ETRSWF-DADVRELEANEYDLASAWYHITYHPYYWG---YGENDDSDYRNPHLISFPWTV 134
            E R+WF +    + E + Y  ASAWYH+TYHP YWG   +G N D      H +SFPW V
Sbjct: 1047 EARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNHGMNRD------HFLSFPWCV 1100

Query: 133  YDKLLRIKRNKT 98
            YD+L+ IK++KT
Sbjct: 1101 YDRLVEIKKDKT 1112


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  199 bits (506), Expect(2) = 3e-62
 Identities = 99/165 (60%), Positives = 129/165 (78%), Gaps = 1/165 (0%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            E+++E+F NY++NDS+GIIS  H VFAD + +MA SD C KLA+L ++AVDFPKTGVPA+
Sbjct: 689  EEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAE 748

Query: 638  IPSDLVPREYPDFMEK-EDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDR 462
            IPS L P+EYPDFM+K  DK TYIS+RVIGKL+R VKD A Q+ + + FT++VA ++YD 
Sbjct: 749  IPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDA 808

Query: 461  DLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            DLEV  ++DYID AF  K  YDS L ++M  YGI+ EAEI+SG I
Sbjct: 809  DLEVDGFEDYIDEAFDYKTEYDSKLGNLMDYYGIKTEAEILSGGI 853



 Score = 67.0 bits (162), Expect(2) = 3e-62
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = -3

Query: 301  ETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 131
            E R+WF    D+ ++       ASAWYH+TYHP YWG Y +      +  H ISFPW VY
Sbjct: 879  EARTWFKRHNDIDDMLPK----ASAWYHVTYHPTYWGCYNQG----LKRDHFISFPWCVY 930

Query: 130  DKLLRIKRNKTR 95
            D+L++IK+ K R
Sbjct: 931  DQLIQIKKEKAR 942


>ref|XP_006469266.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 292

 Score =  193 bits (491), Expect(2) = 3e-62
 Identities = 95/164 (57%), Positives = 125/164 (76%)
 Frame = -2

Query: 818 EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
           ED++E+F NY++NDS+GII+  HTVFAD +   ARS+ CL+LA+ F++AVDFPKTGVPA+
Sbjct: 18  EDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQLAEKFSIAVDFPKTGVPAE 77

Query: 638 IPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRD 459
           IP  L  +EYPDFMEK DKPTY S+ VIGKL+RAVKD A  +  I  FTKEVA ++YD D
Sbjct: 78  IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPD 137

Query: 458 LEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
           +EV  ++D+ID A   K  YD  L ++M  YGI+ EAEI++G+I
Sbjct: 138 MEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSI 181



 Score = 72.8 bits (177), Expect(2) = 3e-62
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
 Frame = -3

Query: 301 ETRSWF-DADVRELEANEYDLASAWYHITYHPYYWG---YGENDDSDYRNPHLISFPWTV 134
           E R+WF +    + E + Y  ASAWYH+TYHP YWG   +G N D      H +SFPW V
Sbjct: 207 EARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNHGMNRD------HFLSFPWCV 260

Query: 133 YDKLLRIKRNKT 98
           YD+L+ IK++KT
Sbjct: 261 YDRLVEIKKDKT 272


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  192 bits (487), Expect(2) = 8e-62
 Identities = 96/164 (58%), Positives = 120/164 (73%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            E+I+E+F NYM+NDS+GII+  HTVFAD +   A S  C+ LA LF++AVDFPKTGVPA 
Sbjct: 926  EEIEEYFTNYMINDSLGIIANAHTVFADKEPMKADSTPCVDLANLFSVAVDFPKTGVPAD 985

Query: 638  IPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRD 459
            IP  L  +EYPDFM+K DKPTY S+RVIGKL+R VKD    +  I+SFTK VA K+YD D
Sbjct: 986  IPQHLYVKEYPDFMDKTDKPTYQSRRVIGKLFREVKDLPPHTSAITSFTKSVALKSYDLD 1045

Query: 458  LEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            +EV  ++ Y+D A   K+ YD  L  +M  YGI+ EAEIVSGNI
Sbjct: 1046 MEVDGFELYLDDAHWYKSEYDFKLAGLMDHYGIKTEAEIVSGNI 1089



 Score = 72.8 bits (177), Expect(2) = 8e-62
 Identities = 36/75 (48%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
 Frame = -3

Query: 301  ETRSWFDADVRELEANEYDL-------ASAWYHITYHPYYWG-YGENDDSDYRNPHLISF 146
            E R WF      ++  +Y L       ASAWYHITYHP YWG Y E D  +    H ISF
Sbjct: 1115 EVRGWFKEKRSVVDEGDYSLDDDVYAKASAWYHITYHPEYWGSYFEEDGRN--RAHFISF 1172

Query: 145  PWTVYDKLLRIKRNK 101
            PW +YDKL+ IKR++
Sbjct: 1173 PWCIYDKLIHIKRHR 1187


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  189 bits (481), Expect(2) = 1e-61
 Identities = 91/164 (55%), Positives = 126/164 (76%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            E+++E+F NY++NDS+GII+  HTVFAD + + A  D C +LA+LF++AVDFPKTGVPA+
Sbjct: 844  EEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAE 903

Query: 638  IPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRD 459
            IP +L  +EYPDFMEK DKPTY S+ VIGKL+R VKD A  +  I SFT++VA ++YD D
Sbjct: 904  IPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPD 963

Query: 458  LEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            +EV  ++DY+  AF  K+ YD  L ++M  YGI+ E+EI+SG+I
Sbjct: 964  MEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSI 1007



 Score = 74.7 bits (182), Expect(2) = 1e-61
 Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
 Frame = -3

Query: 301  ETRSWFDADVRELEANEYDL---ASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTV 134
            E R+WF+    E ++   D+   ASAWYH+TYHP YWG Y E  D D    H +SFPW V
Sbjct: 1033 EARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRD----HFLSFPWCV 1088

Query: 133  YDKLLRIKRNKTRG 92
            YDKL+  KR K  G
Sbjct: 1089 YDKLIHTKRKKMSG 1102


>gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
          Length = 1050

 Score =  197 bits (501), Expect(2) = 1e-61
 Identities = 97/165 (58%), Positives = 129/165 (78%), Gaps = 1/165 (0%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            ++++E+F NY++NDS+GIIS  H VFAD + +MA SD C KLA+L ++AVDFPKTGVPA+
Sbjct: 776  QEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAE 835

Query: 638  IPSDLVPREYPDFMEK-EDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDR 462
            IPS L P+EYPDFM+K  DK TYIS+RVIGKL+R VKD A Q+ + + FT++VA ++YD 
Sbjct: 836  IPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDA 895

Query: 461  DLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            DLEV  ++DYID AF  K  YD+ L ++M  YGI+ EAEI+SG I
Sbjct: 896  DLEVDGFEDYIDEAFDYKTEYDNKLGNLMEYYGIKTEAEILSGGI 940



 Score = 67.0 bits (162), Expect(2) = 1e-61
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = -3

Query: 301  ETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 131
            E R+WF    D+ ++       ASAWYH+TYHP YWG Y +      +  H ISFPW VY
Sbjct: 966  EARTWFKRRNDIDDMLPK----ASAWYHVTYHPTYWGCYNQG----LKRDHFISFPWCVY 1017

Query: 130  DKLLRIKRNKTR 95
            D+L++IK+ K R
Sbjct: 1018 DQLIQIKKEKAR 1029


>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score =  189 bits (481), Expect(2) = 1e-61
 Identities = 91/164 (55%), Positives = 126/164 (76%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            E+++E+F NY++NDS+GII+  HTVFAD + + A  D C +LA+LF++AVDFPKTGVPA+
Sbjct: 642  EEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAE 701

Query: 638  IPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRD 459
            IP +L  +EYPDFMEK DKPTY S+ VIGKL+R VKD A  +  I SFT++VA ++YD D
Sbjct: 702  IPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPD 761

Query: 458  LEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            +EV  ++DY+  AF  K+ YD  L ++M  YGI+ E+EI+SG+I
Sbjct: 762  MEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSI 805



 Score = 74.7 bits (182), Expect(2) = 1e-61
 Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
 Frame = -3

Query: 301  ETRSWFDADVRELEANEYDL---ASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTV 134
            E R+WF+    E ++   D+   ASAWYH+TYHP YWG Y E  D D    H +SFPW V
Sbjct: 831  EARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRD----HFLSFPWCV 886

Query: 133  YDKLLRIKRNKTRG 92
            YDKL+  KR K  G
Sbjct: 887  YDKLIHTKRKKMSG 900


>gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1021

 Score =  197 bits (500), Expect(2) = 1e-61
 Identities = 97/165 (58%), Positives = 129/165 (78%), Gaps = 1/165 (0%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            ++++E+F NY++NDS+GIIS  H VFAD + +MA SD C KLA+L ++AVDFPKTGVPA+
Sbjct: 747  QEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAE 806

Query: 638  IPSDLVPREYPDFMEK-EDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDR 462
            IPS L P+EYPDFM+K  DK TYIS+RVIGKL+R VKD A Q+ + + FT++VA ++YD 
Sbjct: 807  IPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDA 866

Query: 461  DLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            DLEV  ++DYID AF  K  YD+ L ++M  YGI+ EAEI+SG I
Sbjct: 867  DLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 911



 Score = 67.0 bits (162), Expect(2) = 1e-61
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = -3

Query: 301  ETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 131
            E R+WF    D+ ++       ASAWYH+TYHP YWG Y +      +  H ISFPW VY
Sbjct: 937  EARTWFKRRNDIDDMLPK----ASAWYHVTYHPTYWGCYNQG----LKRDHFISFPWCVY 988

Query: 130  DKLLRIKRNKTR 95
            D+L++IK+ K R
Sbjct: 989  DQLIQIKKEKAR 1000


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score =  196 bits (499), Expect(2) = 2e-61
 Identities = 97/165 (58%), Positives = 128/165 (77%), Gaps = 1/165 (0%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            E+++E+F NY++NDS+GII+  H VFAD + +MA SD C KLA+L ++AVDFPKTGVPA+
Sbjct: 841  EEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAE 900

Query: 638  IPSDLVPREYPDFMEK-EDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDR 462
            IP  L P+EYPDFM+K  DK TYIS+RVIGKLYR VKD A Q+ + + FT++VA ++YD 
Sbjct: 901  IPPQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDA 960

Query: 461  DLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            DLEV  ++DYID AF  K  YD+ L ++M  YGI+ EAEI+SG I
Sbjct: 961  DLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1005



 Score = 67.0 bits (162), Expect(2) = 2e-61
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = -3

Query: 301  ETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 131
            E R+WF    D+ ++       ASAWYH+TYHP YWG Y +      +  H ISFPW VY
Sbjct: 1031 EARTWFKRRNDIDDMLPK----ASAWYHVTYHPTYWGCYNQG----LKRDHFISFPWCVY 1082

Query: 130  DKLLRIKRNKTR 95
            D+L++IK+ K R
Sbjct: 1083 DQLIQIKKEKAR 1094


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  188 bits (477), Expect(2) = 3e-61
 Identities = 90/164 (54%), Positives = 126/164 (76%)
 Frame = -2

Query: 818 EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
           ++++E+F NY++NDS+GII+  HTVFAD + + A  D C +LA+LF++AVDFPKTGVPA+
Sbjct: 377 KEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAE 436

Query: 638 IPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRD 459
           IP +L  +EYPDFMEK DKPTY S+ VIGKL+R VKD A  +  I SFT++VA ++YD D
Sbjct: 437 IPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPD 496

Query: 458 LEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
           +EV  ++DY+  AF  K+ YD  L ++M  YGI+ E+EI+SG+I
Sbjct: 497 MEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSI 540



 Score = 74.7 bits (182), Expect(2) = 3e-61
 Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
 Frame = -3

Query: 301 ETRSWFDADVRELEANEYDL---ASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTV 134
           E R+WF+    E ++   D+   ASAWYH+TYHP YWG Y E  D D    H +SFPW V
Sbjct: 566 EARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRD----HFLSFPWCV 621

Query: 133 YDKLLRIKRNKTRG 92
           YDKL+  KR K  G
Sbjct: 622 YDKLIHTKRKKMSG 635


>ref|XP_006388173.1| hypothetical protein POPTR_0303s002201g, partial [Populus
           trichocarpa] gi|550309641|gb|ERP47087.1| hypothetical
           protein POPTR_0303s002201g, partial [Populus
           trichocarpa]
          Length = 642

 Score =  196 bits (498), Expect(2) = 3e-61
 Identities = 99/166 (59%), Positives = 130/166 (78%), Gaps = 2/166 (1%)
 Frame = -2

Query: 818 EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
           E++QE+FA+Y+LNDS+GII   H VFADS+ +MARS+ C++LAQL ++AVDFPKTGVPAK
Sbjct: 368 EEVQEYFADYLLNDSLGIICTAHVVFADSEPDMARSEKCIELAQLSSIAVDFPKTGVPAK 427

Query: 638 IPSDLVPREYPDFMEK-EDK-PTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYD 465
           IP +L  +EYPDFMEK  DK  TY+S+RV+GKL+RAVKD A  +  I SFTKEVA ++YD
Sbjct: 428 IPKELRVKEYPDFMEKPADKCTTYVSQRVLGKLFRAVKDIAPDTSPIKSFTKEVATRSYD 487

Query: 464 RDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            D+EV  +KDYI+ AF  K+ YD+ L ++M  YGI+ EAEI+   I
Sbjct: 488 PDMEVDGFKDYINEAFYYKSEYDNKLGNMMDYYGIKTEAEIIGSCI 533



 Score = 66.6 bits (161), Expect(2) = 3e-61
 Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
 Frame = -3

Query: 301 ETRSWFDADVRELEANE-YDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVYD 128
           + R+WF+    E   ++ Y  ASAWYH+TYHP +WG Y E  D      H +SFPW V+D
Sbjct: 559 QARAWFNESGSEESPDDVYRKASAWYHVTYHPRFWGLYNEGMD----RVHFLSFPWCVHD 614

Query: 127 KLLRIKRNKT 98
           KL  IK+  T
Sbjct: 615 KLFEIKKGTT 624


>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  204 bits (518), Expect(2) = 4e-61
 Identities = 96/164 (58%), Positives = 129/164 (78%)
 Frame = -2

Query: 818  EDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAK 639
            E+++E+F NYM+ND +G+I+  H VFAD +  MA SD C++LAQLF++AVDFPKTGVPA+
Sbjct: 534  EEVEEYFTNYMVNDGLGVIANAHVVFADREPNMAMSDPCIELAQLFSIAVDFPKTGVPAE 593

Query: 638  IPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRD 459
            IPS L P+EYPDFMEK DK TY S++VIGKL+R VKD  TQ+ +I++FT++VA ++YD D
Sbjct: 594  IPSQLRPKEYPDFMEKPDKTTYHSEKVIGKLFREVKDKTTQASSITTFTRDVARRSYDTD 653

Query: 458  LEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 327
            LEV  ++DYID AF  K+ YD  L ++M  YGI+ EAE +SG I
Sbjct: 654  LEVDGFEDYIDEAFDYKSEYDKKLGNLMDYYGIKTEAETLSGGI 697



 Score = 58.5 bits (140), Expect(2) = 4e-61
 Identities = 30/61 (49%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
 Frame = -3

Query: 301 ETRSWFD--ADVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 131
           E R+WF   +D+ +L A     ASAWYH+ YHP YWG Y E      +  H ISFPW VY
Sbjct: 723 EARTWFKRRSDIDDLLAK----ASAWYHVAYHPTYWGCYNEG----LKRDHFISFPWCVY 774

Query: 130 D 128
           D
Sbjct: 775 D 775