BLASTX nr result
ID: Ephedra27_contig00023982
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00023982
(905 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006848498.1| hypothetical protein AMTR_s00013p00258230 [A... 293 5e-77
ref|XP_004166115.1| PREDICTED: DNA repair protein RAD50-like, pa... 259 7e-67
ref|XP_004133980.1| PREDICTED: DNA repair protein RAD50-like [Cu... 259 7e-67
ref|XP_006601884.1| PREDICTED: DNA repair protein RAD50-like iso... 254 4e-65
ref|XP_003552170.1| PREDICTED: DNA repair protein RAD50-like iso... 254 4e-65
ref|XP_002266665.2| PREDICTED: LOW QUALITY PROTEIN: DNA repair p... 249 1e-63
ref|XP_002522807.1| DNA repair protein RAD50, putative [Ricinus ... 248 2e-63
ref|XP_006492538.1| PREDICTED: DNA repair protein RAD50-like [Ci... 248 2e-63
ref|XP_006421020.1| hypothetical protein CICLE_v10004166mg [Citr... 248 2e-63
ref|XP_002300148.1| DNA repair-recombination family protein [Pop... 248 2e-63
ref|XP_004239850.1| PREDICTED: DNA repair protein RAD50-like [So... 245 1e-62
ref|XP_006365465.1| PREDICTED: DNA repair protein RAD50-like [So... 245 2e-62
gb|ESW35810.1| hypothetical protein PHAVU_001G266800g [Phaseolus... 243 7e-62
ref|XP_004952522.1| PREDICTED: DNA repair protein RAD50-like [Se... 237 5e-60
ref|NP_565733.1| DNA repair protein RAD50 [Arabidopsis thaliana]... 237 5e-60
gb|EOY05148.1| DNA repair-recombination protein (RAD50) isoform ... 236 7e-60
gb|EOY05147.1| DNA repair-recombination protein (RAD50) isoform ... 236 7e-60
gb|EOY05146.1| DNA repair-recombination protein (RAD50) isoform ... 236 7e-60
ref|XP_006647285.1| PREDICTED: DNA repair protein RAD50-like [Or... 236 1e-59
ref|XP_006295998.1| hypothetical protein CARUB_v10025142mg [Caps... 235 2e-59
>ref|XP_006848498.1| hypothetical protein AMTR_s00013p00258230 [Amborella trichopoda]
gi|548851804|gb|ERN10079.1| hypothetical protein
AMTR_s00013p00258230 [Amborella trichopoda]
Length = 1367
Score = 293 bits (751), Expect = 5e-77
Identities = 148/300 (49%), Positives = 208/300 (69%)
Frame = +1
Query: 4 VAKKESYDMEIKSIRGHLDSVTEKHVRLDALTNGMKGNKERIFSNIREVEGKLRRFSQXX 183
+ KKES D+++ ++ ++ T + ++ KE I I+ +E +L
Sbjct: 413 IDKKESNDLKLNALWKSFETATARCSEIEGQKLAKVQKKEDISKRIQTIEEELGTLQLSE 472
Query: 184 XXXXXXXXXXTKLEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISE 363
LE +V+++T+E+ +RNF I +I E+ ++D++IKS EKD M S+
Sbjct: 473 VDMARIDEKEKLLESEVQRRTSELAQRNFESNIHRIKTEMFSIDQKIKSLYREKDVMASD 532
Query: 364 SEDRIKLDLKKSESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKE 543
+EDR+KL+LKK E G ++K KI++E KE+++ ALKGRLP KDLK+EISSA ++KE
Sbjct: 533 AEDRVKLNLKKEELEGHKRKHAKIMEECKEKIRSALKGRLPAAKDLKREISSALGSLRKE 592
Query: 544 YEDYNAKSLEAQKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSF 723
Y+D + KS EA+KE LV+ K+ E N L+K QR+ EAK+RF +S+LQSL L ++DS+
Sbjct: 593 YDDLSLKSNEAEKEVKLVEMKIQETNASLSKLQRDMEAKKRFFDSRLQSLIHLSCDLDSY 652
Query: 724 PGVLQDAVEKRNMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
P VLQ+A+EKR++RKSQHDIADGMRRMFEPFERVARANHVCPCCERPF+ EEEDEFV+KQ
Sbjct: 653 PVVLQEAMEKRDVRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFSPEEEDEFVRKQ 712
>ref|XP_004166115.1| PREDICTED: DNA repair protein RAD50-like, partial [Cucumis sativus]
Length = 1088
Score = 259 bits (663), Expect = 7e-67
Identities = 134/300 (44%), Positives = 198/300 (66%), Gaps = 2/300 (0%)
Frame = +1
Query: 10 KKESYDMEIKSIRGHLDSVTEKHVRLDALTNGMKGNKERIFSNIREVEGKLRRFSQXXXX 189
K+ S D+E+K+ ++ +DA + K I I E E + F
Sbjct: 187 KRLSNDVELKTAWDCYMDANDRWKNIDAQKHAKADIKRGIMKRIEEKESERDSFELQISH 246
Query: 190 XXXXXXXXTK--LEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISE 363
+ ++ +V +KT ++ ER F TI Q ++ ++++IK+ EKD M +
Sbjct: 247 VDLSHIDEREKNMQIEVERKTNQLAEREFESTIRQKQSDLYGIEQKIKAVNREKDIMAGD 306
Query: 364 SEDRIKLDLKKSESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKE 543
SEDR+KL LKK+E +KK KIIDE K++++G LKGR P EKDLKKEI+ A + E
Sbjct: 307 SEDRVKLALKKAELDNHKKKHRKIIDEYKDKIRGVLKGRFPPEKDLKKEITQALRAVGME 366
Query: 544 YEDYNAKSLEAQKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSF 723
Y+D N+KS EA+K+ +++ K+ EVN++L++YQ+E E+++RF+ESKLQSL L ++D +
Sbjct: 367 YDDLNSKSREAEKDVNMLQMKIQEVNHNLSRYQKEMESRKRFVESKLQSLDPLSFSVDLY 426
Query: 724 PGVLQDAVEKRNMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
L+ A EK++++KS+++IADGMR+MF+PFERVARA+HVCPCCERPFTAEEEDEFVKKQ
Sbjct: 427 LKALEGAKEKKDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFTAEEEDEFVKKQ 486
>ref|XP_004133980.1| PREDICTED: DNA repair protein RAD50-like [Cucumis sativus]
Length = 1316
Score = 259 bits (663), Expect = 7e-67
Identities = 134/300 (44%), Positives = 198/300 (66%), Gaps = 2/300 (0%)
Frame = +1
Query: 10 KKESYDMEIKSIRGHLDSVTEKHVRLDALTNGMKGNKERIFSNIREVEGKLRRFSQXXXX 189
K+ S D+E+K+ ++ +DA + K I I E E + F
Sbjct: 415 KRLSNDVELKTAWDCYMDANDRWKNIDAQKHAKADIKRGIMKRIEEKESERDSFELQISH 474
Query: 190 XXXXXXXXTK--LEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISE 363
+ ++ +V +KT ++ ER F TI Q ++ ++++IK+ EKD M +
Sbjct: 475 VDLSHIDEREKNMQIEVERKTNQLAEREFESTIRQKQSDLYGIEQKIKAVNREKDIMAGD 534
Query: 364 SEDRIKLDLKKSESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKE 543
SEDR+KL LKK+E +KK KIIDE K++++G LKGR P EKDLKKEI+ A + E
Sbjct: 535 SEDRVKLALKKAELDNHKKKHRKIIDEYKDKIRGVLKGRFPPEKDLKKEITQALRAVGME 594
Query: 544 YEDYNAKSLEAQKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSF 723
Y+D N+KS EA+K+ +++ K+ EVN++L++YQ+E E+++RF+ESKLQSL L ++D +
Sbjct: 595 YDDLNSKSREAEKDVNMLQMKIQEVNHNLSRYQKEMESRKRFVESKLQSLDPLSFSVDLY 654
Query: 724 PGVLQDAVEKRNMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
L+ A EK++++KS+++IADGMR+MF+PFERVARA+HVCPCCERPFTAEEEDEFVKKQ
Sbjct: 655 LKALEGAKEKKDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFTAEEEDEFVKKQ 714
>ref|XP_006601884.1| PREDICTED: DNA repair protein RAD50-like isoform X2 [Glycine max]
Length = 1339
Score = 254 bits (648), Expect = 4e-65
Identities = 134/307 (43%), Positives = 200/307 (65%), Gaps = 9/307 (2%)
Frame = +1
Query: 10 KKESYDMEIKSIRGHLDSVTEKHVRLDALTNGMKGNKERIFSNIREVEGKL--------- 162
KK++ D EIK + ++ +A M G+K I I E + +L
Sbjct: 438 KKKANDNEIKMAFDCYMNANDRLKHTEAKIKAMTGSKSGISKRIEEKKNELDSLELQISD 497
Query: 163 RRFSQXXXXXXXXXXXXTKLEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHE 342
FSQ LE +V++K ++++ER F ++ EI ++D++IK+ E
Sbjct: 498 ENFSQLDERER-------NLENEVKRKASQLDERQFEPNKCEVEKEIYSVDQKIKAVSRE 550
Query: 343 KDSMISESEDRIKLDLKKSESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSA 522
KD M+S+S+DR+KL KK E +KK KIIDE K++++ LKGR+PL+KD+KKEI A
Sbjct: 551 KDIMVSDSQDRVKLSYKKGELESQKKKHKKIIDEQKDKIRKVLKGRVPLDKDVKKEIMQA 610
Query: 523 FNVIKKEYEDYNAKSLEAQKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQL 702
+ E++D NAK EA+KE +++ K+ EVN++L+K+ ++ E+++R++ESKLQSL Q
Sbjct: 611 LRAVGAEFDDLNAKYREAEKEVNVLQVKIQEVNSNLSKHHKDLESRKRYIESKLQSLDQQ 670
Query: 703 HVNIDSFPGVLQDAVEKRNMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEE 882
IDS+ VL+ A EKR++++S+++IADGMR+MF+PFERVARANHVCPCCERPF+ EEE
Sbjct: 671 CSGIDSYLKVLESAKEKRDVQRSKYNIADGMRQMFDPFERVARANHVCPCCERPFSPEEE 730
Query: 883 DEFVKKQ 903
D FVKKQ
Sbjct: 731 DSFVKKQ 737
>ref|XP_003552170.1| PREDICTED: DNA repair protein RAD50-like isoform X1 [Glycine max]
Length = 1316
Score = 254 bits (648), Expect = 4e-65
Identities = 134/307 (43%), Positives = 200/307 (65%), Gaps = 9/307 (2%)
Frame = +1
Query: 10 KKESYDMEIKSIRGHLDSVTEKHVRLDALTNGMKGNKERIFSNIREVEGKL--------- 162
KK++ D EIK + ++ +A M G+K I I E + +L
Sbjct: 415 KKKANDNEIKMAFDCYMNANDRLKHTEAKIKAMTGSKSGISKRIEEKKNELDSLELQISD 474
Query: 163 RRFSQXXXXXXXXXXXXTKLEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHE 342
FSQ LE +V++K ++++ER F ++ EI ++D++IK+ E
Sbjct: 475 ENFSQLDERER-------NLENEVKRKASQLDERQFEPNKCEVEKEIYSVDQKIKAVSRE 527
Query: 343 KDSMISESEDRIKLDLKKSESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSA 522
KD M+S+S+DR+KL KK E +KK KIIDE K++++ LKGR+PL+KD+KKEI A
Sbjct: 528 KDIMVSDSQDRVKLSYKKGELESQKKKHKKIIDEQKDKIRKVLKGRVPLDKDVKKEIMQA 587
Query: 523 FNVIKKEYEDYNAKSLEAQKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQL 702
+ E++D NAK EA+KE +++ K+ EVN++L+K+ ++ E+++R++ESKLQSL Q
Sbjct: 588 LRAVGAEFDDLNAKYREAEKEVNVLQVKIQEVNSNLSKHHKDLESRKRYIESKLQSLDQQ 647
Query: 703 HVNIDSFPGVLQDAVEKRNMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEE 882
IDS+ VL+ A EKR++++S+++IADGMR+MF+PFERVARANHVCPCCERPF+ EEE
Sbjct: 648 CSGIDSYLKVLESAKEKRDVQRSKYNIADGMRQMFDPFERVARANHVCPCCERPFSPEEE 707
Query: 883 DEFVKKQ 903
D FVKKQ
Sbjct: 708 DSFVKKQ 714
>ref|XP_002266665.2| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD50-like [Vitis
vinifera]
Length = 1316
Score = 249 bits (636), Expect = 1e-63
Identities = 132/300 (44%), Positives = 192/300 (64%), Gaps = 2/300 (0%)
Frame = +1
Query: 10 KKESYDMEIKSIRGHLDSVTEKHVRLDALTNGMKGNKERIFSNIREVEGKLRRFSQXXXX 189
KK+S +ME+K + ++A K I I E E + F
Sbjct: 415 KKKSIEMELKVAWDRYMDANDHWKDIEAQKQAKVEIKSGILKRIEEKENERDSFELQISN 474
Query: 190 XXXXXXXXTK--LEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISE 363
+ L +V +KT ++ ER F I Q E+ +++++IK+ EKD M +
Sbjct: 475 VSLSHIDEREKNLRIEVERKTNQLAEREFESNIRQKQSELYSIEQKIKALNREKDIMAVD 534
Query: 364 SEDRIKLDLKKSESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKE 543
SEDR+KL LKK E +KK KI+DE K+R++G LKGRLP +KDLKKEI+ A + E
Sbjct: 535 SEDRVKLSLKKGELENHKKKHQKIMDEYKDRIRGVLKGRLPPDKDLKKEITQALRALGIE 594
Query: 544 YEDYNAKSLEAQKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSF 723
++D N+KS EA+KE +++ K+ EVNN+L+K ++ ++++RF+ESKLQSL Q +I+S+
Sbjct: 595 FDDMNSKSREAEKEVNMLQMKIEEVNNNLSKLNKDMDSRKRFIESKLQSLDQQSFSIESY 654
Query: 724 PGVLQDAVEKRNMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
A EKR+++KS+++IADGM++MF+PFERVARA+HVCPCCERPF+AEEEDEFVKKQ
Sbjct: 655 MKAFDLAKEKRDVQKSKYNIADGMKQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQ 714
>ref|XP_002522807.1| DNA repair protein RAD50, putative [Ricinus communis]
gi|223538045|gb|EEF39658.1| DNA repair protein RAD50,
putative [Ricinus communis]
Length = 1256
Score = 248 bits (634), Expect = 2e-63
Identities = 129/300 (43%), Positives = 194/300 (64%), Gaps = 2/300 (0%)
Frame = +1
Query: 10 KKESYDMEIKSIRGHLDSVTEKHVRLDALTNGMKGNKERIFSNIREVEGKLRRFSQXXXX 189
KK S D E+K+ V ++ +DA + K I I + E F +
Sbjct: 415 KKTSNDTEVKTAEDCYLDVNDRWKHIDAQKQAKREIKNGILDRITKKEHDRASFEEEISH 474
Query: 190 XXXXXXXXTK--LEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISE 363
+ + +V +KT ++ ER F I Q E+ +++ IK+ EKD +
Sbjct: 475 VNLSHIDEREKNMRIEVERKTNQLAERAFESNIRQKQTELYGIEQEIKALDGEKDILAIY 534
Query: 364 SEDRIKLDLKKSESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKE 543
SEDR+KL LKK++ +KK KIIDE+K+R++G LKGR+P +KD+KKEI+ A + E
Sbjct: 535 SEDRVKLSLKKADLENHKKKHKKIIDEHKDRIRGVLKGRVPSDKDMKKEITQALRALAVE 594
Query: 544 YEDYNAKSLEAQKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSF 723
++D N+KS EA+KE +++ K+ EVNN+L+K +++ ++++RF+ESKL SL Q + +D +
Sbjct: 595 FDDLNSKSHEAEKEVNVLQMKIQEVNNNLSKLRKDMDSRKRFIESKLHSLDQQSLTVDCY 654
Query: 724 PGVLQDAVEKRNMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
VL A +KR+++KS+++IADGMR+MF+PFERVARA+HVCPCCERPF+AEEEDEFVKKQ
Sbjct: 655 LKVLGSAKDKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQ 714
>ref|XP_006492538.1| PREDICTED: DNA repair protein RAD50-like [Citrus sinensis]
Length = 1316
Score = 248 bits (633), Expect = 2e-63
Identities = 129/300 (43%), Positives = 196/300 (65%), Gaps = 2/300 (0%)
Frame = +1
Query: 10 KKESYDMEIKSIRGHLDSVTEKHVRLDALTNGMKGNKERIFSNIREVEGKLRRFSQXXXX 189
KK+S ++ +K ++ ++A K I +I+E E + F
Sbjct: 415 KKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQISN 474
Query: 190 XXXXXXXX--TKLEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISE 363
K+ +V +KT ++ ER F I Q E+ +D++IK+ EKD + +
Sbjct: 475 LNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAIDQKIKALNREKDVLAGD 534
Query: 364 SEDRIKLDLKKSESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKE 543
SEDR+KL LKK+E +KK KIIDE K++++ LKGRLPL++DLKKEI+ A + E
Sbjct: 535 SEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQALRALLTE 594
Query: 544 YEDYNAKSLEAQKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSF 723
++D ++KS EA KE +++ K+ EV ++L+K++++ ++K+RF+ESKL+SL Q +ID++
Sbjct: 595 FDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQIFSIDTY 654
Query: 724 PGVLQDAVEKRNMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
VL A EKR+++KS+++IADGMR+MF+PFERVARA+HVCPCCERPF+AEEEDEFVKKQ
Sbjct: 655 QKVLDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQ 714
>ref|XP_006421020.1| hypothetical protein CICLE_v10004166mg [Citrus clementina]
gi|557522893|gb|ESR34260.1| hypothetical protein
CICLE_v10004166mg [Citrus clementina]
Length = 1316
Score = 248 bits (633), Expect = 2e-63
Identities = 129/300 (43%), Positives = 196/300 (65%), Gaps = 2/300 (0%)
Frame = +1
Query: 10 KKESYDMEIKSIRGHLDSVTEKHVRLDALTNGMKGNKERIFSNIREVEGKLRRFSQXXXX 189
KK+S ++ +K ++ ++A K I +I+E E + F
Sbjct: 415 KKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQISN 474
Query: 190 XXXXXXXX--TKLEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISE 363
K+ +V +KT ++ ER F I Q E+ +D++IK+ EKD + +
Sbjct: 475 LNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLAGD 534
Query: 364 SEDRIKLDLKKSESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKE 543
SEDR+KL LKK+E +KK KIIDE K++++ LKGRLPL++DLKKEI+ A + E
Sbjct: 535 SEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQALRALLTE 594
Query: 544 YEDYNAKSLEAQKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSF 723
++D ++KS EA KE +++ K+ EV ++L+K++++ ++K+RF+ESKL+SL Q +ID++
Sbjct: 595 FDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQIFSIDTY 654
Query: 724 PGVLQDAVEKRNMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
VL A EKR+++KS+++IADGMR+MF+PFERVARA+HVCPCCERPF+AEEEDEFVKKQ
Sbjct: 655 QKVLDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQ 714
>ref|XP_002300148.1| DNA repair-recombination family protein [Populus trichocarpa]
gi|222847406|gb|EEE84953.1| DNA repair-recombination
family protein [Populus trichocarpa]
Length = 1316
Score = 248 bits (633), Expect = 2e-63
Identities = 131/300 (43%), Positives = 191/300 (63%), Gaps = 2/300 (0%)
Frame = +1
Query: 10 KKESYDMEIKSIRGHLDSVTEKHVRLDALTNGMKGNKERIFSNIREVEGKLRRFSQXXXX 189
KK S D E+K E+ +A K I + I E E + F +
Sbjct: 415 KKTSNDTEVKRAENCYWDANERWKNTEAQKQAKVEIKNSILNRITEKEREHSSFEEQISH 474
Query: 190 XXXXXXXXTK--LEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISE 363
+ + +V +KT ++ ER F I Q E+ ++++IK EKD + +
Sbjct: 475 VNLSHIDEKEKNMRIEVERKTNQLAEREFESHIRQKQSELYGIEQQIKVLNREKDILAGD 534
Query: 364 SEDRIKLDLKKSESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKE 543
SEDR+KL LKK E +KK KIIDE K++++G LKGRLP +KDLKKEI+ + E
Sbjct: 535 SEDRVKLSLKKVELENHKKKHRKIIDECKDKIRGVLKGRLPPDKDLKKEITQTLRALGLE 594
Query: 544 YEDYNAKSLEAQKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSF 723
++D N KS EA+KE +++ K+ EVNN+L+K +++ ++++RF+ESKLQSL QL ++D +
Sbjct: 595 FDDLNMKSREAEKEVNVLQMKIQEVNNNLSKQRKDMDSRKRFIESKLQSLDQLSFSVDLY 654
Query: 724 PGVLQDAVEKRNMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
L+ + EKR+++KS+++IADGMR+MF+PFERVARA+HVCPCCERPF+AEEEDEFVKKQ
Sbjct: 655 LKALESSKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQ 714
>ref|XP_004239850.1| PREDICTED: DNA repair protein RAD50-like [Solanum lycopersicum]
Length = 1316
Score = 245 bits (626), Expect = 1e-62
Identities = 132/303 (43%), Positives = 195/303 (64%), Gaps = 5/303 (1%)
Frame = +1
Query: 10 KKESYDMEIKSIRGHLDSV-----TEKHVRLDALTNGMKGNKERIFSNIREVEGKLRRFS 174
KK+S + EI + HL + +EK + A + G +RI E + R+ S
Sbjct: 415 KKKSNEAEIAAA-WHLYDIANREWSEKEAQKQAKADIKNGISKRIKEKEDERDVLERQIS 473
Query: 175 QXXXXXXXXXXXXTKLEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSM 354
++E + +K+ ++ ER F I Q E+ T+D+++K + EKD M
Sbjct: 474 DVNVAHLDEREKKMQIESE--RKSKQLAEREFDLNIRQKQTEMYTVDQKLKDLRDEKDHM 531
Query: 355 ISESEDRIKLDLKKSESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVI 534
+ESEDRIKL LKK+E + K KIID+NK+++KG LKGRLP +KDLK EI+ A +
Sbjct: 532 AAESEDRIKLSLKKAELGSLEKNHKKIIDDNKDKIKGVLKGRLPSDKDLKNEITQAQRAL 591
Query: 535 KKEYEDYNAKSLEAQKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNI 714
++E +D + KS EA+KE +++ K+ EVN +L KY ++ ++++RFLESKLQ + Q I
Sbjct: 592 QREVDDLSVKSREAEKEVNMLQMKIEEVNQNLTKYHKDMDSRKRFLESKLQLMDQEFAGI 651
Query: 715 DSFPGVLQDAVEKRNMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFV 894
+S+P ++ EKR+++K +IADGMR+MF+PFERVARA+H+CPCCERPF+AEEEDEFV
Sbjct: 652 ESYPKIMDSVKEKRDVQKRLFNIADGMRQMFDPFERVARAHHICPCCERPFSAEEEDEFV 711
Query: 895 KKQ 903
KKQ
Sbjct: 712 KKQ 714
>ref|XP_006365465.1| PREDICTED: DNA repair protein RAD50-like [Solanum tuberosum]
Length = 1316
Score = 245 bits (625), Expect = 2e-62
Identities = 127/300 (42%), Positives = 192/300 (64%), Gaps = 2/300 (0%)
Frame = +1
Query: 10 KKESYDMEIKSIRGHLDSVTEKHVRLDALTNGMKGNKERIFSNIREVEGK--LRRFSQXX 183
KK+S + EI + D + +A K I I+E E + +
Sbjct: 415 KKKSNEAEIAAAWHRYDIANREWSEKEAQKQAKADIKNGILKRIKEKEDERDVLESQISD 474
Query: 184 XXXXXXXXXXTKLEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISE 363
K++ + +K+ ++ ER F I Q E+ T+D+++K + EKD M +E
Sbjct: 475 VNVAHLDEREKKMQIESERKSKQLAEREFDLNIRQKQTEMYTVDQKLKDLRDEKDHMAAE 534
Query: 364 SEDRIKLDLKKSESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKE 543
SEDRIKL LKK+E + K KI+D+NK+++KG LKGRLP +KDLK EI+ A +++E
Sbjct: 535 SEDRIKLSLKKAELGILEKNHKKIMDDNKDKIKGVLKGRLPSDKDLKNEITQAQRALQRE 594
Query: 544 YEDYNAKSLEAQKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSF 723
+D + KS EA+KE +++ K+ EVN++L KY ++ ++++RFLESKLQ + Q I+S+
Sbjct: 595 VDDLSVKSREAEKEVNMLQMKIEEVNHNLTKYHKDMDSRKRFLESKLQLMDQEFAGIESY 654
Query: 724 PGVLQDAVEKRNMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
P ++ EK++++KS+ +IADGMR+MF+PFERVARA+H+CPCCERPF+AEEEDEFVKKQ
Sbjct: 655 PKIMDSVKEKKDVQKSKFNIADGMRQMFDPFERVARAHHICPCCERPFSAEEEDEFVKKQ 714
>gb|ESW35810.1| hypothetical protein PHAVU_001G266800g [Phaseolus vulgaris]
Length = 1316
Score = 243 bits (620), Expect = 7e-62
Identities = 123/300 (41%), Positives = 195/300 (65%), Gaps = 2/300 (0%)
Frame = +1
Query: 10 KKESYDMEIKSIRGHLDSVTEKHVRLDALTNGMKGNKERIFSNIREVEGKL--RRFSQXX 183
KK++ D E++ + ++ +A M+G K+ I I E + +L
Sbjct: 415 KKKANDNELEMGWDCYMNANDRWKDTEAKIKAMQGIKDGILKRIEEKKNELDSSEHQMTN 474
Query: 184 XXXXXXXXXXTKLEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISE 363
L ++ +K +++++R F I Q+ EI ++D++I++ EKD M S+
Sbjct: 475 VNFSHIDERERNLRNEIERKESQLSQRQFEPNIRQLQNEIYSVDQKIRAVNREKDIMTSD 534
Query: 364 SEDRIKLDLKKSESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKE 543
SEDR+ L KK+E +KK KI DE K++++ LKGR+PL+KD+KKEI+ A + E
Sbjct: 535 SEDRVMLSHKKAELENRKKKHKKIFDEQKDKIRKVLKGRVPLDKDVKKEITQALRAVGAE 594
Query: 544 YEDYNAKSLEAQKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSF 723
++D NAK +A+KE +++ K+ EVN +L+K+ ++ E+++RF+ESKLQSL Q +DS+
Sbjct: 595 FDDLNAKYRDAEKEVNMLQMKIQEVNGNLSKHHKDLESRKRFIESKLQSLDQQCSGLDSY 654
Query: 724 PGVLQDAVEKRNMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
VL+ + EKR++++S+++IADGMR+MF+PFERVARA+HVCPCCERPF+ EEED FVKKQ
Sbjct: 655 LKVLESSKEKRDVQRSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSPEEEDNFVKKQ 714
>ref|XP_004952522.1| PREDICTED: DNA repair protein RAD50-like [Setaria italica]
Length = 1316
Score = 237 bits (604), Expect = 5e-60
Identities = 127/301 (42%), Positives = 190/301 (63%), Gaps = 12/301 (3%)
Frame = +1
Query: 37 KSIRGHLDSVTEKHVRLDALTNGMKGNKERIFSNIREVEGKLRRFSQXXXXXXXXXXXXT 216
KS LD + + +++++A + + G +I S I + G RR +
Sbjct: 417 KSNDDQLDVLWKHYLKVNARNSEVDG---QIQSKIESMSGISRRTKDKEKERDAAEVELS 473
Query: 217 KL------------EEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMIS 360
KL + +V +KT + ER++ I Q EI +LD++IK+ Q EKDS+
Sbjct: 474 KLNLSRIDERERHMQIEVERKTLALGERDYDSIINQKRTEIFSLDQKIKALQREKDSINR 533
Query: 361 ESEDRIKLDLKKSESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKK 540
+++DR+KL LKK ++KL +++DE+K++++ L+GRLP EKD+KKEI+ AF + K
Sbjct: 534 DADDRVKLGLKKDALESSKEKLKEMVDEHKDKIRNILRGRLPAEKDMKKEINQAFWPVDK 593
Query: 541 EYEDYNAKSLEAQKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDS 720
EY + +KS EA++EF L SK+ + L K +++ +AKRRFL+SKLQS++Q+ +ID
Sbjct: 594 EYNELKSKSQEAEQEFKLAQSKVSDAREQLTKLRKDLDAKRRFLDSKLQSISQISADIDM 653
Query: 721 FPGVLQDAVEKRNMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKK 900
FP VLQDA +KR+ +K A+GMR+MF PFE+VAR HVCPCCER FT +EEDEFVKK
Sbjct: 654 FPKVLQDAKDKRDEQKRLEIYANGMRQMFVPFEQVARDRHVCPCCERAFTPDEEDEFVKK 713
Query: 901 Q 903
Q
Sbjct: 714 Q 714
>ref|NP_565733.1| DNA repair protein RAD50 [Arabidopsis thaliana]
gi|57013013|sp|Q9SL02.2|RAD50_ARATH RecName: Full=DNA
repair protein RAD50; Short=AtRAD50
gi|7110148|gb|AAF36810.1|AF168748_1 DNA
repair-recombination protein [Arabidopsis thaliana]
gi|20197622|gb|AAD15407.2| putative RAD50 DNA repair
protein [Arabidopsis thaliana] gi|22654997|gb|AAM98090.1|
At2g31970/F22D22.28 [Arabidopsis thaliana]
gi|29028758|gb|AAO64758.1| At2g31970/F22D22.28
[Arabidopsis thaliana] gi|330253520|gb|AEC08614.1| DNA
repair protein RAD50 [Arabidopsis thaliana]
Length = 1316
Score = 237 bits (604), Expect = 5e-60
Identities = 112/229 (48%), Positives = 169/229 (73%)
Frame = +1
Query: 217 KLEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISESEDRIKLDLKK 396
+++ ++ +KT + +ER F IEQ EI +L+ +IK+ E+D M ++EDR+KL LKK
Sbjct: 486 QVQVELERKTKQNSERGFESKIEQKQHEIYSLEHKIKTLNRERDVMAGDAEDRVKLSLKK 545
Query: 397 SESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKEYEDYNAKSLEA 576
+E ++KK KIIDE K+R++G LKGRLP EKD+K+EI A I++EY+D + KS EA
Sbjct: 546 TEQENLKKKHKKIIDECKDRIRGVLKGRLPPEKDMKREIVQALRSIEREYDDLSLKSREA 605
Query: 577 QKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSFPGVLQDAVEKR 756
+KE +++ K+ EVNN L K+ ++ E+++R++ESKLQ+L Q V ID++P +L+ A +KR
Sbjct: 606 EKEVNMLQMKIQEVNNSLFKHNKDTESRKRYIESKLQALKQESVTIDAYPKLLESAKDKR 665
Query: 757 NMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
+ RK ++++A+GMR+MFEPFE+ AR H CPCCER FTA+EE F+KKQ
Sbjct: 666 DDRKREYNMANGMRQMFEPFEKRARQEHSCPCCERSFTADEEASFIKKQ 714
>gb|EOY05148.1| DNA repair-recombination protein (RAD50) isoform 3 [Theobroma cacao]
Length = 1118
Score = 236 bits (603), Expect = 7e-60
Identities = 109/228 (47%), Positives = 170/228 (74%)
Frame = +1
Query: 220 LEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISESEDRIKLDLKKS 399
++ ++ +K +++ERNF I Q E+ +D++IK E+D + ++EDR L +KKS
Sbjct: 487 MQIEIDRKKKQLDERNFDANIRQKQHEVYDIDQKIKVLNRERDIIAGDAEDRTLLSIKKS 546
Query: 400 ESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKEYEDYNAKSLEAQ 579
E +K+ KIIDE K+R++G LKGR+P +KDLK+EI+ A ++ E+++ + KS EA+
Sbjct: 547 ELENKKKQHKKIIDEYKDRIRGVLKGRVPTDKDLKREITKALRSLQMEFDELSTKSSEAE 606
Query: 580 KEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSFPGVLQDAVEKRN 759
KE +++ K+ E+NN+L+K+ ++ ++++RFLE++L SL Q IDS+P L+ A EK++
Sbjct: 607 KEVNMLQMKIEEINNNLSKHHKDMDSRKRFLEARLNSLDQQSFTIDSYPNFLETAKEKKD 666
Query: 760 MRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
+ KS+ +IADGMR+MF+PFERVARA+H+CPCCERPF+AEEEDEFVKKQ
Sbjct: 667 IHKSKFNIADGMRQMFDPFERVARAHHICPCCERPFSAEEEDEFVKKQ 714
>gb|EOY05147.1| DNA repair-recombination protein (RAD50) isoform 2, partial
[Theobroma cacao]
Length = 1027
Score = 236 bits (603), Expect = 7e-60
Identities = 109/228 (47%), Positives = 170/228 (74%)
Frame = +1
Query: 220 LEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISESEDRIKLDLKKS 399
++ ++ +K +++ERNF I Q E+ +D++IK E+D + ++EDR L +KKS
Sbjct: 201 MQIEIDRKKKQLDERNFDANIRQKQHEVYDIDQKIKVLNRERDIIAGDAEDRTLLSIKKS 260
Query: 400 ESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKEYEDYNAKSLEAQ 579
E +K+ KIIDE K+R++G LKGR+P +KDLK+EI+ A ++ E+++ + KS EA+
Sbjct: 261 ELENKKKQHKKIIDEYKDRIRGVLKGRVPTDKDLKREITKALRSLQMEFDELSTKSSEAE 320
Query: 580 KEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSFPGVLQDAVEKRN 759
KE +++ K+ E+NN+L+K+ ++ ++++RFLE++L SL Q IDS+P L+ A EK++
Sbjct: 321 KEVNMLQMKIEEINNNLSKHHKDMDSRKRFLEARLNSLDQQSFTIDSYPNFLETAKEKKD 380
Query: 760 MRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
+ KS+ +IADGMR+MF+PFERVARA+H+CPCCERPF+AEEEDEFVKKQ
Sbjct: 381 IHKSKFNIADGMRQMFDPFERVARAHHICPCCERPFSAEEEDEFVKKQ 428
>gb|EOY05146.1| DNA repair-recombination protein (RAD50) isoform 1 [Theobroma cacao]
Length = 1316
Score = 236 bits (603), Expect = 7e-60
Identities = 109/228 (47%), Positives = 170/228 (74%)
Frame = +1
Query: 220 LEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISESEDRIKLDLKKS 399
++ ++ +K +++ERNF I Q E+ +D++IK E+D + ++EDR L +KKS
Sbjct: 487 MQIEIDRKKKQLDERNFDANIRQKQHEVYDIDQKIKVLNRERDIIAGDAEDRTLLSIKKS 546
Query: 400 ESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKEYEDYNAKSLEAQ 579
E +K+ KIIDE K+R++G LKGR+P +KDLK+EI+ A ++ E+++ + KS EA+
Sbjct: 547 ELENKKKQHKKIIDEYKDRIRGVLKGRVPTDKDLKREITKALRSLQMEFDELSTKSSEAE 606
Query: 580 KEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSFPGVLQDAVEKRN 759
KE +++ K+ E+NN+L+K+ ++ ++++RFLE++L SL Q IDS+P L+ A EK++
Sbjct: 607 KEVNMLQMKIEEINNNLSKHHKDMDSRKRFLEARLNSLDQQSFTIDSYPNFLETAKEKKD 666
Query: 760 MRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
+ KS+ +IADGMR+MF+PFERVARA+H+CPCCERPF+AEEEDEFVKKQ
Sbjct: 667 IHKSKFNIADGMRQMFDPFERVARAHHICPCCERPFSAEEEDEFVKKQ 714
>ref|XP_006647285.1| PREDICTED: DNA repair protein RAD50-like [Oryza brachyantha]
Length = 1316
Score = 236 bits (601), Expect = 1e-59
Identities = 110/228 (48%), Positives = 167/228 (73%)
Frame = +1
Query: 220 LEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISESEDRIKLDLKKS 399
L+ +V +K + +RN+ I Q EI +LD +IK+ Q EKD+++S+S DR+ LDLKK
Sbjct: 487 LQIEVERKALALGDRNYDLIITQKRTEIFSLDEKIKALQREKDNIMSDSNDRVLLDLKKD 546
Query: 400 ESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKEYEDYNAKSLEAQ 579
E +KK+ KI+DE++ +++ LKGRLP EKDL KEIS F +++EY+D N+KS EA+
Sbjct: 547 ELEQCKKKIKKIVDEHENKIRSVLKGRLPSEKDLNKEISPVFGSVEREYDDLNSKSREAE 606
Query: 580 KEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSFPGVLQDAVEKRN 759
+E LV K+ + + L+K Q+E +AKR ++ESKL+S+ ++ +ID FP +L+DA E+R+
Sbjct: 607 QELKLVQMKIRDARSHLSKLQKELDAKRSYVESKLRSITKISADIDMFPKLLKDAQEERD 666
Query: 760 MRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
+K+ ++A GMR M++PFE+VAR +H+CPCC+R FT EEED+FVKKQ
Sbjct: 667 KQKNNFNLAKGMREMYDPFEKVAREHHMCPCCQRAFTPEEEDQFVKKQ 714
>ref|XP_006295998.1| hypothetical protein CARUB_v10025142mg [Capsella rubella]
gi|482564706|gb|EOA28896.1| hypothetical protein
CARUB_v10025142mg [Capsella rubella]
Length = 1316
Score = 235 bits (599), Expect = 2e-59
Identities = 112/229 (48%), Positives = 167/229 (72%)
Frame = +1
Query: 217 KLEEDVRKKTTEINERNFRDTIEQIAIEILTLDRRIKSAQHEKDSMISESEDRIKLDLKK 396
+++ ++ +KT + +ER F IE+ EI +++ +IK+ E+D M ++EDR+KL L+K
Sbjct: 486 QVQLELERKTKQNSEREFEANIEKKQHEIYSMEHKIKTLNRERDVMAGDAEDRVKLSLRK 545
Query: 397 SESSGIRKKLTKIIDENKERLKGALKGRLPLEKDLKKEISSAFNVIKKEYEDYNAKSLEA 576
+E +RKK KIIDE K+R++G LKGRLP EKD+KKEI A I++EY + + KS EA
Sbjct: 546 TEQENLRKKHKKIIDECKDRIRGVLKGRLPPEKDMKKEIDQALRSIEREYSELSLKSREA 605
Query: 577 QKEFSLVDSKMGEVNNDLAKYQREKEAKRRFLESKLQSLAQLHVNIDSFPGVLQDAVEKR 756
+KE +++ K+ EVNN L K+ ++ E+++R++ESKLQ+L Q V ID++P +L+ A E R
Sbjct: 606 EKEVNMLQMKIQEVNNGLFKHNKDTESRKRYIESKLQALKQESVTIDAYPKLLESAKEIR 665
Query: 757 NMRKSQHDIADGMRRMFEPFERVARANHVCPCCERPFTAEEEDEFVKKQ 903
+ K ++++A GMR+MFEPFE VAR+ H CPCCER FT+EEED FVKKQ
Sbjct: 666 DEHKRKYNMATGMRQMFEPFEEVARSRHFCPCCERSFTSEEEDSFVKKQ 714