BLASTX nr result

ID: Ephedra27_contig00023945 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00023945
         (455 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR18382.1| unknown [Picea sitchensis]                              94   2e-17
ref|XP_006855276.1| hypothetical protein AMTR_s00057p00025150 [A...    91   2e-16
ref|XP_004230301.1| PREDICTED: RNA pseudourine synthase 1-like [...    84   2e-14
ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [...    84   2e-14
ref|XP_006344754.1| PREDICTED: RNA pseudouridine synthase 1-like...    84   3e-14
ref|XP_003555184.1| PREDICTED: RNA pseudouridine synthase 1-like...    84   3e-14
ref|XP_002318955.1| predicted protein [Populus trichocarpa]            83   3e-14
ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...    81   1e-13
ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [...    81   1e-13
gb|ESW16990.1| hypothetical protein PHAVU_007G200900g [Phaseolus...    81   2e-13
gb|EMS63083.1| RNA pseudourine synthase 1 [Triticum urartu]            80   2e-13
tpg|DAA55260.1| TPA: hypothetical protein ZEAMMB73_192305 [Zea m...    80   2e-13
tpg|DAA55259.1| TPA: hypothetical protein ZEAMMB73_192305 [Zea m...    80   2e-13
gb|ACN27400.1| unknown [Zea mays]                                      80   2e-13
gb|ACN26382.1| unknown [Zea mays]                                      80   2e-13
ref|NP_001140548.1| hypothetical protein [Zea mays] gi|194699944...    80   2e-13
gb|AAG50905.1|AC069159_6 RNA pseudouridylate synthase, putative ...    80   3e-13
gb|AAG51501.1|AC058785_4 unknown protein [Arabidopsis thaliana]        80   3e-13
ref|NP_176031.2| RNA pseudourine synthase 1 [Arabidopsis thalian...    80   3e-13
ref|XP_004304865.1| PREDICTED: RNA pseudourine synthase 1-like [...    80   4e-13

>gb|ABR18382.1| unknown [Picea sitchensis]
          Length = 358

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 38/62 (61%), Positives = 48/62 (77%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWALK 276
           LHCQY  LPIRGD KY G   WK  T+ +HALHAE++CFEHPVT N+VK  APLP+W ++
Sbjct: 297 LHCQYMGLPIRGDVKYEGPHIWKGITYANHALHAESLCFEHPVTNNMVKFHAPLPQWVME 356

Query: 275 SF 270
           ++
Sbjct: 357 AY 358


>ref|XP_006855276.1| hypothetical protein AMTR_s00057p00025150 [Amborella trichopoda]
           gi|548859042|gb|ERN16743.1| hypothetical protein
           AMTR_s00057p00025150 [Amborella trichopoda]
          Length = 326

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 37/67 (55%), Positives = 49/67 (73%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWALK 276
           LHCQY  +P+RGD KY G   WK+ T+  HALHAE + F+HPVTG+L++  APLP WA +
Sbjct: 260 LHCQYLGIPLRGDVKYEGPHEWKEKTYDYHALHAENLSFDHPVTGSLMEFHAPLPSWARE 319

Query: 275 SFNCTVG 255
           + +CT G
Sbjct: 320 ALSCTKG 326


>ref|XP_004230301.1| PREDICTED: RNA pseudourine synthase 1-like [Solanum lycopersicum]
          Length = 308

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 34/60 (56%), Positives = 45/60 (75%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWALK 276
           LHCQY  +PIRGD +Y GV  WK + + SH LHAE++ FEHP+TG  + L+APLP WA++
Sbjct: 242 LHCQYLGIPIRGDVRYEGVYEWKGNIYDSHELHAESLSFEHPITGKSMLLQAPLPSWAIQ 301


>ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223548464|gb|EEF49955.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 321

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 37/61 (60%), Positives = 44/61 (72%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWALK 276
           LHCQY  + IRGD KY GV  W+  T+  H LHAET+ FEHPVTG  V LRAPLP WA++
Sbjct: 257 LHCQYLGISIRGDVKYEGVYEWEGRTYDGHELHAETLSFEHPVTGVPVMLRAPLPSWAIQ 316

Query: 275 S 273
           +
Sbjct: 317 A 317


>ref|XP_006344754.1| PREDICTED: RNA pseudouridine synthase 1-like [Solanum tuberosum]
          Length = 332

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 34/60 (56%), Positives = 44/60 (73%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWALK 276
           LHCQY  +PIRGD +Y GV  WK   + SH LHAE++ FEHP+TG  + L+APLP WA++
Sbjct: 272 LHCQYLGIPIRGDVRYEGVYEWKGSRYDSHELHAESLSFEHPITGKPMLLQAPLPSWAIQ 331


>ref|XP_003555184.1| PREDICTED: RNA pseudouridine synthase 1-like [Glycine max]
          Length = 320

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 39/62 (62%), Positives = 43/62 (69%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWALK 276
           LHCQY  + I GD KY GV  WK  T  +H LHAET+ FEHPVTG  VKLRAPLP WA  
Sbjct: 257 LHCQYLGISIVGDVKYEGVYEWKGTTHHAHHLHAETLSFEHPVTGLHVKLRAPLPPWATH 316

Query: 275 SF 270
           +F
Sbjct: 317 AF 318


>ref|XP_002318955.1| predicted protein [Populus trichocarpa]
          Length = 261

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 36/63 (57%), Positives = 43/63 (68%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWALK 276
           LHCQY  +PIRGD KY GV  WK  T+  H LHAE++  EHPVTG  +  RAPLP WA +
Sbjct: 194 LHCQYLGIPIRGDVKYEGVCEWKGRTYDGHELHAESLSLEHPVTGQPLMFRAPLPVWATR 253

Query: 275 SFN 267
            F+
Sbjct: 254 WFS 256


>ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 1-like
           [Cucumis sativus]
          Length = 366

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 35/58 (60%), Positives = 42/58 (72%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWA 282
           LHCQY  +PIRGD KY GV  W +  + SH LHAE++ F HPVTG  +KL+APLP WA
Sbjct: 288 LHCQYLGIPIRGDVKYEGVTEWNEKIYDSHELHAESLYFVHPVTGIPLKLQAPLPSWA 345


>ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [Cucumis sativus]
          Length = 366

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 35/58 (60%), Positives = 42/58 (72%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWA 282
           LHCQY  +PIRGD KY GV  W +  + SH LHAE++ F HPVTG  +KL+APLP WA
Sbjct: 288 LHCQYLGIPIRGDVKYEGVTEWNEKIYDSHELHAESLYFVHPVTGIPLKLQAPLPSWA 345


>gb|ESW16990.1| hypothetical protein PHAVU_007G200900g [Phaseolus vulgaris]
          Length = 315

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 38/62 (61%), Positives = 43/62 (69%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWALK 276
           LHCQY  + I GD KY GV  WK  T  +H LHAET+ FEHPVTG  V LRAPLP WA +
Sbjct: 252 LHCQYLGISIIGDVKYEGVYEWKGTTHHAHHLHAETLSFEHPVTGVDVMLRAPLPLWATQ 311

Query: 275 SF 270
           +F
Sbjct: 312 AF 313


>gb|EMS63083.1| RNA pseudourine synthase 1 [Triticum urartu]
          Length = 309

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 36/58 (62%), Positives = 39/58 (67%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWA 282
           LHCQY   PIRGD KYGGV+ W       HALHAE++ F HPVTG  V  RAPLP WA
Sbjct: 244 LHCQYLGFPIRGDVKYGGVIEWNGVDCDGHALHAESLSFVHPVTGLPVTFRAPLPSWA 301


>tpg|DAA55260.1| TPA: hypothetical protein ZEAMMB73_192305 [Zea mays]
          Length = 348

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 35/58 (60%), Positives = 41/58 (70%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWA 282
           LHCQY  LPIRGD KYGGV+ W       HALHAE++ F HP+TG  + LR+PLP WA
Sbjct: 283 LHCQYLGLPIRGDVKYGGVIEWDGVECEGHALHAESLSFVHPITGLPITLRSPLPPWA 340


>tpg|DAA55259.1| TPA: hypothetical protein ZEAMMB73_192305 [Zea mays]
          Length = 340

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 35/58 (60%), Positives = 41/58 (70%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWA 282
           LHCQY  LPIRGD KYGGV+ W       HALHAE++ F HP+TG  + LR+PLP WA
Sbjct: 275 LHCQYLGLPIRGDVKYGGVIEWDGVECEGHALHAESLSFVHPITGLPITLRSPLPPWA 332


>gb|ACN27400.1| unknown [Zea mays]
          Length = 315

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 35/58 (60%), Positives = 41/58 (70%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWA 282
           LHCQY  LPIRGD KYGGV+ W       HALHAE++ F HP+TG  + LR+PLP WA
Sbjct: 250 LHCQYLGLPIRGDVKYGGVIEWDGVECEGHALHAESLSFVHPITGLPITLRSPLPPWA 307


>gb|ACN26382.1| unknown [Zea mays]
          Length = 307

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 35/58 (60%), Positives = 41/58 (70%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWA 282
           LHCQY  LPIRGD KYGGV+ W       HALHAE++ F HP+TG  + LR+PLP WA
Sbjct: 242 LHCQYLGLPIRGDVKYGGVIEWDGVECEGHALHAESLSFVHPITGLPITLRSPLPPWA 299


>ref|NP_001140548.1| hypothetical protein [Zea mays] gi|194699944|gb|ACF84056.1| unknown
           [Zea mays] gi|414878126|tpg|DAA55257.1| TPA:
           hypothetical protein ZEAMMB73_192305 [Zea mays]
           gi|414878127|tpg|DAA55258.1| TPA: hypothetical protein
           ZEAMMB73_192305 [Zea mays]
          Length = 205

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 35/58 (60%), Positives = 41/58 (70%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWA 282
           LHCQY  LPIRGD KYGGV+ W       HALHAE++ F HP+TG  + LR+PLP WA
Sbjct: 140 LHCQYLGLPIRGDVKYGGVIEWDGVECEGHALHAESLSFVHPITGLPITLRSPLPPWA 197


>gb|AAG50905.1|AC069159_6 RNA pseudouridylate synthase, putative [Arabidopsis thaliana]
          Length = 254

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 34/58 (58%), Positives = 40/58 (68%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWA 282
           LHCQY  +PIRGD KY GV  W   TF  H LHAE +  +HPVTG+ + +RAPLP WA
Sbjct: 194 LHCQYLGIPIRGDVKYHGVYEWNGRTFEGHELHAECLSLDHPVTGDSIVIRAPLPYWA 251


>gb|AAG51501.1|AC058785_4 unknown protein [Arabidopsis thaliana]
          Length = 293

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 34/58 (58%), Positives = 40/58 (68%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWA 282
           LHCQY  +PIRGD KY GV  W   TF  H LHAE +  +HPVTG+ + +RAPLP WA
Sbjct: 233 LHCQYLGIPIRGDVKYHGVYEWNGRTFEGHELHAECLSLDHPVTGDSIVIRAPLPYWA 290


>ref|NP_176031.2| RNA pseudourine synthase 1 [Arabidopsis thaliana]
           gi|75140931|sp|Q7XA65.1|PUS1_ARATH RecName: Full=RNA
           pseudouridine synthase 1; AltName: Full=RNA
           pseudouridylate synthase 1; AltName: Full=RNA-uridine
           isomerase 1 gi|33589806|gb|AAQ22669.1| At1g56345
           [Arabidopsis thaliana] gi|110736414|dbj|BAF00174.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332195260|gb|AEE33381.1| RNA pseudourine synthase 1
           [Arabidopsis thaliana]
          Length = 322

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 34/58 (58%), Positives = 40/58 (68%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWA 282
           LHCQY  +PIRGD KY GV  W   TF  H LHAE +  +HPVTG+ + +RAPLP WA
Sbjct: 262 LHCQYLGIPIRGDVKYHGVYEWNGRTFEGHELHAECLSLDHPVTGDSIVIRAPLPYWA 319


>ref|XP_004304865.1| PREDICTED: RNA pseudourine synthase 1-like [Fragaria vesca subsp.
           vesca]
          Length = 347

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 33/58 (56%), Positives = 40/58 (68%)
 Frame = -1

Query: 455 LHCQYARLPIRGDAKYGGVLTWKDDTFGSHALHAETVCFEHPVTGNLVKLRAPLPEWA 282
           LHCQY  + IRGD KY GV  WK  T+G H LHAE++  +HP+TG  +  RAPLP WA
Sbjct: 281 LHCQYLGISIRGDVKYEGVYEWKGTTYGGHELHAESMSLDHPITGLPILFRAPLPSWA 338


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