BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00023871
         (627 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08974.1| gag-pol polyprotein, putative [Medicago truncatula]    179   3e-51
gb|AAP53706.1| retrotransposon protein, putative, unclassified [...   164   2e-50
gb|ABA98071.1| retrotransposon protein, putative, unclassified [...   162   2e-49
emb|CAN67988.1| hypothetical protein VITISV_017211 [Vitis vinifera]   171   2e-49
gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-...   160   3e-49
emb|CAN64324.1| hypothetical protein VITISV_005640 [Vitis vinifera]   166   3e-49
emb|CAN71245.1| hypothetical protein VITISV_011091 [Vitis vinifera]   171   3e-49
gb|AAX96493.1| retrotransposon protein, putative, unclassified [...   160   5e-49
gb|AAT76321.1| putative integrase [Oryza sativa Japonica Group] ...   159   6e-49
emb|CAE03600.2| OSJNBb0004A17.2 [Oryza sativa Japonica Group]         162   2e-48
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s...   162   2e-48
gb|ABF93543.1| retrotransposon protein, putative, unclassified [...   162   2e-48
gb|AAO37957.1| putative gag-pol polyprotein [Oryza sativa Japoni...   162   2e-48
gb|ABF94836.1| retrotransposon protein, putative, unclassified [...   162   2e-48
gb|ABA98369.1| retrotransposon protein, putative, Ty1-copia subc...   159   2e-48
gb|ABA98847.1| retrotransposon protein, putative, unclassified [...   158   3e-48
emb|CAN65058.1| hypothetical protein VITISV_008902 [Vitis vinifera]   171   3e-48
emb|CAD40455.2| OSJNBa0041M21.13 [Oryza sativa Japonica Group] g...   162   3e-48
gb|AAW57789.1| putative polyprotein [Oryza sativa Japonica Group]     160   6e-48
gb|ABA97696.1| retrotransposon protein, putative, unclassified [...   159   6e-48

>gb|ABN08974.1| gag-pol polyprotein, putative [Medicago truncatula]
          Length = 469

 Score =  179 bits (453), Expect(2) = 3e-51
 Identities = 86/159 (54%), Positives = 115/159 (72%)
 Frame = -1

Query: 627 LRVKLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEK 448
           L+ KLFQMDVK AFLNG L E+VF+EQP GF+D NFP+HV  L+KALYGLKQAPRAWYE+
Sbjct: 85  LKFKLFQMDVKSAFLNGYLHEEVFVEQPKGFIDPNFPDHVYKLKKALYGLKQAPRAWYER 144

Query: 447 LDIVLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFE 268
           L   L+++G++K   D TL+V K    +++ ++YVDDI+FG  S  +   F + M   FE
Sbjct: 145 LTEFLINQGYKKGGTDKTLFVKKEHGGVMIAQIYVDDIVFGGMSNQMVQHFVQQMQSEFE 204

Query: 267 MSLHQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNM 151
           MSL  EL +FLGLQIRQ+E+ I +S   Y  N+++KF +
Sbjct: 205 MSLVGELTYFLGLQIRQMEDTIFISQSKYAKNIVRKFGL 243



 Score = 49.7 bits (117), Expect(2) = 3e-51
 Identities = 24/54 (44%), Positives = 34/54 (62%)
 Frame = -3

Query: 163 KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
           K   DN     TP A+   + KD +G + D++ Y SMIGSLLY +++RPDI F+
Sbjct: 240 KFGLDNASHKRTPTATHLKLSKDENGVAVDQSLYRSMIGSLLYLTASRPDITFA 293


>gb|AAP53706.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1419

 Score =  164 bits (416), Expect(2) = 2e-50
 Identities = 83/160 (51%), Positives = 111/160 (69%)
 Frame = -1

Query: 618  KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
            KL+QMDVK AFLNG ++E+V+++QP GF + +FPNHV  L KALYGLKQAPRAWY++L  
Sbjct: 1013 KLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRLKN 1072

Query: 438  VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
             L++KGF     D TL+VLK+ D+ + V++YVDDI+FG ++  V   FA  M   FEMS+
Sbjct: 1073 FLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHAVVVDFAETMRREFEMSM 1132

Query: 258  HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
              EL +FLGLQI+Q   G  V    Y  +LL++F M   K
Sbjct: 1133 MGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCK 1172



 Score = 60.8 bits (146), Expect(2) = 2e-50
 Identities = 26/54 (48%), Positives = 39/54 (72%)
 Frame = -3

Query: 163  KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
            + + +NCK I+TP+ S  ++  D DG + D+  Y SMIGSLLY +++RPDIQF+
Sbjct: 1165 RFKMENCKPISTPIGSTAVLDPDEDGEAVDQKEYRSMIGSLLYLTASRPDIQFA 1218


>gb|ABA98071.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1408

 Score =  162 bits (409), Expect(2) = 2e-49
 Identities = 82/160 (51%), Positives = 111/160 (69%)
 Frame = -1

Query: 618  KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
            KL+QMDVK AFLNG ++E+V+++QP GF + +FPNHV  L KALYGLKQ PRAWY++L  
Sbjct: 1057 KLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQTPRAWYDRLKN 1116

Query: 438  VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
             L++K F   + D TL+VLK+ D+ + V++YVDDI+FG ++  V   FA  M   FEMS+
Sbjct: 1117 FLLAKLFTMGNVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHAVVVDFAETMRREFEMSM 1176

Query: 258  HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
              EL +FLGLQI+Q   G  V    Y  +LL++FNM   K
Sbjct: 1177 MGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFNMENCK 1216



 Score = 60.8 bits (146), Expect(2) = 2e-49
 Identities = 26/54 (48%), Positives = 38/54 (70%)
 Frame = -3

Query: 163  KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
            +   +NCK I+TP+ S  ++  D DG + D+  Y SMIGSLLY +++RPDIQF+
Sbjct: 1209 RFNMENCKPISTPIGSTAVLDPDEDGEAVDQKVYRSMIGSLLYLTASRPDIQFA 1262


>emb|CAN67988.1| hypothetical protein VITISV_017211 [Vitis vinifera]
          Length = 1119

 Score =  171 bits (434), Expect(2) = 2e-49
 Identities = 80/162 (49%), Positives = 114/162 (70%)
 Frame = -1

Query: 624  RVKLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKL 445
            R+   +MDVK AFLNG + E+V++EQP GF   NFPNHV  L+KALYGLKQAPRAWYE+L
Sbjct: 585  RLSCIEMDVKSAFLNGFINEEVYVEQPPGFQSFNFPNHVFKLKKALYGLKQAPRAWYERL 644

Query: 444  DIVLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEM 265
               L  +GF+    D TL++   E  ++LV++YVDDI+FG+T++ + + F++ M   FEM
Sbjct: 645  SKFLFKRGFKMGKIDTTLFIKTKESDMLLVQIYVDDIIFGATNVSLCEEFSKCMHNEFEM 704

Query: 264  SLHQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
            S+  EL  F+GLQI+QL+ G  ++   Y+ +LL++FNM   K
Sbjct: 705  SMMGELNFFIGLQIKQLKEGTFINQAKYIRDLLKRFNMXEAK 746



 Score = 50.8 bits (120), Expect(2) = 2e-49
 Identities = 24/47 (51%), Positives = 31/47 (65%)
 Frame = -3

Query: 142 KTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
           KT+ TPM+S   + KD  G S D T Y  MIGSLLY +++ PDI +S
Sbjct: 746 KTMKTPMSSSIKLDKDEKGKSIDSTMYRGMIGSLLYLTASXPDIMYS 792


>gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77552672|gb|ABA95469.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 709

 Score =  160 bits (406), Expect(2) = 3e-49
 Identities = 81/160 (50%), Positives = 109/160 (68%)
 Frame = -1

Query: 618 KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
           KL+QMDVK AFLNG ++E+V+++QP GF + +FPNHV  L KA YGLKQAPRAWY++L  
Sbjct: 303 KLYQMDVKSAFLNGFIQEEVYIKQPPGFENPDFPNHVFKLSKAFYGLKQAPRAWYDRLKN 362

Query: 438 VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
            L++KGF     D TL+VLK+ D+ + V++YVDDI+FG +   +   FA  M   FEMS+
Sbjct: 363 FLLAKGFTMGKFDKTLFVLKHGDNQLFVQIYVDDIIFGCSIHALVVDFAETMRREFEMSM 422

Query: 258 HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
             EL +FLGLQI+Q   G  V    Y  +LL++F M   K
Sbjct: 423 MGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCK 462



 Score = 60.8 bits (146), Expect(2) = 3e-49
 Identities = 26/54 (48%), Positives = 39/54 (72%)
 Frame = -3

Query: 163 KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
           + + +NCK I+TP+ S  ++  D DG + D+  Y SMIGSLLY +++RPDIQF+
Sbjct: 455 RFKMENCKPISTPIGSTAVLDPDEDGKAVDQKEYRSMIGSLLYLTASRPDIQFA 508


>emb|CAN64324.1| hypothetical protein VITISV_005640 [Vitis vinifera]
          Length = 557

 Score =  166 bits (421), Expect(2) = 3e-49
 Identities = 79/159 (49%), Positives = 113/159 (71%)
 Frame = -1

Query: 615 LFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDIV 436
           L+Q+DVK AFLNG + E+V++EQP GF   NFPNHV  L+KALYGLKQAPRAWYE+L   
Sbjct: 89  LYQVDVKSAFLNGFINEEVYVEQPPGFQSFNFPNHVFKLKKALYGLKQAPRAWYERLSKF 148

Query: 435 LVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSLH 256
           L+ K F+    D TL++   E+ ++L+++YVDDI+FG T++ + + F++ M   FEMS+ 
Sbjct: 149 LLKKVFKMGKIDTTLFIKTKENDMLLIQIYVDDIIFGVTNVSLCEDFSKCMHSEFEMSIM 208

Query: 255 QELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
            EL  FLGLQI+QL+ G  ++   Y+ +LL++ NM   K
Sbjct: 209 GELNFFLGLQIKQLKEGTFINQAKYIRDLLKRLNMEEAK 247



 Score = 55.1 bits (131), Expect(2) = 3e-49
 Identities = 25/54 (46%), Positives = 35/54 (64%)
 Frame = -3

Query: 163 KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
           ++  +  KT+ TPM+S   + KD  G S D T Y  MIGSLLY +++RPDI +S
Sbjct: 240 RLNMEEAKTMKTPMSSSIKLDKDKKGKSIDSTMYRGMIGSLLYLAASRPDIMYS 293


>emb|CAN71245.1| hypothetical protein VITISV_011091 [Vitis vinifera]
          Length = 550

 Score =  171 bits (432), Expect(2) = 3e-49
 Identities = 79/159 (49%), Positives = 115/159 (72%)
 Frame = -1

Query: 615 LFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDIV 436
           L+QMDVK AFLNG + E+V++EQP GF   NFPNHV  L+K LYGLKQ+PRAWYE+L   
Sbjct: 277 LYQMDVKSAFLNGFINEEVYVEQPPGFQSFNFPNHVFKLKKTLYGLKQSPRAWYERLSKF 336

Query: 435 LVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSLH 256
           L+ KGF+    D TL++   E+ ++LV++YVDDI+FG+T++ + + F++ M   FEMS+ 
Sbjct: 337 LLKKGFKMGKIDTTLFIKTKENDMLLVQIYVDDIIFGATNVSLCEEFSKCMHSEFEMSMM 396

Query: 255 QELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
            EL  FLGL+I+QL+ G  ++   Y+ ++L++FNM   K
Sbjct: 397 GELNFFLGLKIKQLKEGTFINQAKYIRDILKRFNMEEAK 435



 Score = 50.8 bits (120), Expect(2) = 3e-49
 Identities = 24/54 (44%), Positives = 33/54 (61%)
 Frame = -3

Query: 163 KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
           +   +  KT+ TPM+S     KD  G S + T Y  MIGSLLY +++RPDI +S
Sbjct: 428 RFNMEEAKTMKTPMSSSIKFDKDEKGKSVNSTMYKGMIGSLLYLTASRPDIMYS 481


>gb|AAX96493.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|77548895|gb|ABA91692.1|
            retrotransposon protein, putative, unclassified,
            expressed [Oryza sativa Japonica Group]
          Length = 1299

 Score =  160 bits (406), Expect(2) = 5e-49
 Identities = 81/160 (50%), Positives = 109/160 (68%)
 Frame = -1

Query: 618  KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
            KL+QMDVK AFLNG ++E+V+++QP GF + +F NHV  L KALYGLKQAPRAWY++L  
Sbjct: 979  KLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFSNHVFKLSKALYGLKQAPRAWYDRLKN 1038

Query: 438  VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
             L+ KGF     D TL+VLK+ D+ + V++YVDDI+FG ++  +   FA  M   FEMS+
Sbjct: 1039 FLLVKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHALVVEFAETMRREFEMSM 1098

Query: 258  HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
              EL +FLGLQI+Q   G  V    Y  +LL++F M   K
Sbjct: 1099 MSELSYFLGLQIKQTSQGTFVHQTKYTKDLLRRFKMENCK 1138



 Score = 60.5 bits (145), Expect(2) = 5e-49
 Identities = 26/53 (49%), Positives = 38/53 (71%)
 Frame = -3

Query: 163  KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQF 5
            + + +NCK I+TP+ S  ++  D DG + D+  Y SMIGSLLY +++RPDIQF
Sbjct: 1131 RFKMENCKPISTPIGSTAVLDPDEDGEAVDQKEYRSMIGSLLYLTASRPDIQF 1183


>gb|AAT76321.1| putative integrase [Oryza sativa Japonica Group]
            gi|108709546|gb|ABF97341.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1425

 Score =  159 bits (403), Expect(2) = 6e-49
 Identities = 79/160 (49%), Positives = 110/160 (68%)
 Frame = -1

Query: 618  KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
            KL+QMDVK AFLNG ++E+V+++QP GF + +FPNHV  L KALYGLKQAPR WY++L  
Sbjct: 1121 KLYQMDVKSAFLNGFIQEKVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRPWYDRLKN 1180

Query: 438  VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
             L++KGF     D TL+VLK+ D+ + +++YVDDI+FG ++  +   FA  M   FEMS+
Sbjct: 1181 FLLAKGFTMGKVDKTLFVLKHGDNQLFIQIYVDDIIFGCSTHALVVEFAETMRREFEMSM 1240

Query: 258  HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
              +L +FLGLQI+Q   G  V    Y  +LL++F M   K
Sbjct: 1241 MGKLSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCK 1280



 Score = 61.2 bits (147), Expect(2) = 6e-49
 Identities = 26/54 (48%), Positives = 39/54 (72%)
 Frame = -3

Query: 163  KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
            + + +NCK I+TP+ S  ++  D DG + D+  Y SMIGSLLY +++RPDIQF+
Sbjct: 1273 RFKMENCKPISTPIGSTAMLDPDEDGKAVDQKEYRSMIGSLLYLTASRPDIQFA 1326


>emb|CAE03600.2| OSJNBb0004A17.2 [Oryza sativa Japonica Group]
          Length = 2256

 Score =  162 bits (409), Expect(2) = 2e-48
 Identities = 83/160 (51%), Positives = 108/160 (67%)
 Frame = -1

Query: 618  KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
            KLFQMDVK AFLNG ++E+V+++QP GF +  FPNHV  L+KALYGLKQAPRAWYE+L  
Sbjct: 1368 KLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKT 1427

Query: 438  VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
             L+  GF+  + D TL+ L      +LV++YVDDI+FG +S  +   F+  M   FEMS+
Sbjct: 1428 FLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSM 1487

Query: 258  HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
              EL  FLGLQI+Q + GI V    Y   LL+KF+M   K
Sbjct: 1488 MGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCK 1527



 Score = 57.4 bits (137), Expect(2) = 2e-48
 Identities = 27/54 (50%), Positives = 34/54 (62%)
 Frame = -3

Query: 163  KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
            K    +CK I TPMA+   +  D DG   D+  Y SMIGSLLY +++RPDI FS
Sbjct: 1520 KFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFS 1573


>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa Japonica
            Group]
          Length = 2145

 Score =  162 bits (409), Expect(2) = 2e-48
 Identities = 83/160 (51%), Positives = 108/160 (67%)
 Frame = -1

Query: 618  KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
            KLFQMDVK AFLNG ++E+V+++QP GF +  FPNHV  L+KALYGLKQAPRAWYE+L  
Sbjct: 1389 KLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKT 1448

Query: 438  VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
             L+  GF+  + D TL+ L      +LV++YVDDI+FG +S  +   F+  M   FEMS+
Sbjct: 1449 FLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSM 1508

Query: 258  HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
              EL  FLGLQI+Q + GI V    Y   LL+KF+M   K
Sbjct: 1509 MGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCK 1548



 Score = 57.4 bits (137), Expect(2) = 2e-48
 Identities = 27/54 (50%), Positives = 34/54 (62%)
 Frame = -3

Query: 163  KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
            K    +CK I TPMA+   +  D DG   D+  Y SMIGSLLY +++RPDI FS
Sbjct: 1541 KFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFS 1594


>gb|ABF93543.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 2124

 Score =  162 bits (409), Expect(2) = 2e-48
 Identities = 83/160 (51%), Positives = 108/160 (67%)
 Frame = -1

Query: 618  KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
            KLFQMDVK AFLNG ++E+V+++QP GF +  FPNHV  L+KALYGLKQAPRAWYE+L  
Sbjct: 1368 KLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKT 1427

Query: 438  VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
             L+  GF+  + D TL+ L      +LV++YVDDI+FG +S  +   F+  M   FEMS+
Sbjct: 1428 FLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSM 1487

Query: 258  HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
              EL  FLGLQI+Q + GI V    Y   LL+KF+M   K
Sbjct: 1488 MGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCK 1527



 Score = 57.4 bits (137), Expect(2) = 2e-48
 Identities = 27/54 (50%), Positives = 34/54 (62%)
 Frame = -3

Query: 163  KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
            K    +CK I TPMA+   +  D DG   D+  Y SMIGSLLY +++RPDI FS
Sbjct: 1520 KFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFS 1573


>gb|AAO37957.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108712101|gb|ABF99896.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1969

 Score =  162 bits (409), Expect(2) = 2e-48
 Identities = 83/160 (51%), Positives = 108/160 (67%)
 Frame = -1

Query: 618  KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
            KLFQMDVK AFLNG ++E+V+++QP GF +  FPNHV  L+KALYGLKQAPRAWYE+L  
Sbjct: 1389 KLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKT 1448

Query: 438  VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
             L+  GF+  + D TL+ L      +LV++YVDDI+FG +S  +   F+  M   FEMS+
Sbjct: 1449 FLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSM 1508

Query: 258  HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
              EL  FLGLQI+Q + GI V    Y   LL+KF+M   K
Sbjct: 1509 MGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCK 1548



 Score = 57.4 bits (137), Expect(2) = 2e-48
 Identities = 27/54 (50%), Positives = 34/54 (62%)
 Frame = -3

Query: 163  KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
            K    +CK I TPMA+   +  D DG   D+  Y SMIGSLLY +++RPDI FS
Sbjct: 1541 KFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFS 1594


>gb|ABF94836.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1948

 Score =  162 bits (409), Expect(2) = 2e-48
 Identities = 83/160 (51%), Positives = 108/160 (67%)
 Frame = -1

Query: 618  KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
            KLFQMDVK AFLNG ++E+V+++QP GF +  FPNHV  L+KALYGLKQAPRAWYE+L  
Sbjct: 1368 KLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKT 1427

Query: 438  VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
             L+  GF+  + D TL+ L      +LV++YVDDI+FG +S  +   F+  M   FEMS+
Sbjct: 1428 FLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSM 1487

Query: 258  HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
              EL  FLGLQI+Q + GI V    Y   LL+KF+M   K
Sbjct: 1488 MGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCK 1527



 Score = 57.4 bits (137), Expect(2) = 2e-48
 Identities = 27/54 (50%), Positives = 34/54 (62%)
 Frame = -3

Query: 163  KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
            K    +CK I TPMA+   +  D DG   D+  Y SMIGSLLY +++RPDI FS
Sbjct: 1520 KFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFS 1573


>gb|ABA98369.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 904

 Score =  159 bits (402), Expect(2) = 2e-48
 Identities = 80/160 (50%), Positives = 111/160 (69%)
 Frame = -1

Query: 618  KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
            KL+QMDVK AFLNG ++E+V+++QP GF + +FPNH+  L KALYGLKQAPRAWY++L  
Sbjct: 591  KLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHIFKLSKALYGLKQAPRAWYDRLKN 650

Query: 438  VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
             L++KGF     D TL+VLK+ D+ + V++YVDDI+FG ++  +   FA  M   FEMS+
Sbjct: 651  FLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHALVVDFAEIMRREFEMSM 710

Query: 258  HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
              EL +FLGLQI+Q   G  V     + +LL++F M   K
Sbjct: 711  MGELSYFLGLQIKQTPQGTFVHQTKDMKDLLRRFKMENCK 750



 Score = 59.7 bits (143), Expect(2) = 2e-48
 Identities = 26/54 (48%), Positives = 38/54 (70%)
 Frame = -3

Query: 163 KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
           + + +NCK I+TP+ S  ++  D DG   D+  Y SMIGSLLY +++RPDIQF+
Sbjct: 743 RFKMENCKPISTPIGSTAVLDPDEDGEVVDQKEYRSMIGSLLYLTASRPDIQFA 796


>gb|ABA98847.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1417

 Score =  158 bits (399), Expect(2) = 3e-48
 Identities = 80/160 (50%), Positives = 109/160 (68%)
 Frame = -1

Query: 618  KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
            KL+QMDVK AFLNG ++E+V+++QP GF + +FPNHV  L KALYGLKQAPRAWY++L  
Sbjct: 1011 KLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRLKN 1070

Query: 438  VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
             L++KGF     D TL+VLK+ D+ + V++YVDDI+FG ++  +   FA  M   FEMS+
Sbjct: 1071 FLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHALVVDFAETMRREFEMSM 1130

Query: 258  HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
              EL +FL LQI+Q   G  V    Y  +LL++  M   K
Sbjct: 1131 MGELSYFLRLQIKQTPQGTFVHQTKYTKDLLRRLKMENCK 1170



 Score = 60.5 bits (145), Expect(2) = 3e-48
 Identities = 26/54 (48%), Positives = 39/54 (72%)
 Frame = -3

Query: 163  KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
            +++ +NCK I+TP+ S  ++  D DG   D+  Y SMIGSLLY +++RPDIQF+
Sbjct: 1163 RLKMENCKPISTPIGSTAVLDPDEDGEVVDQKEYRSMIGSLLYLTASRPDIQFA 1216


>emb|CAN65058.1| hypothetical protein VITISV_008902 [Vitis vinifera]
          Length = 857

 Score =  171 bits (434), Expect(2) = 3e-48
 Identities = 81/159 (50%), Positives = 116/159 (72%)
 Frame = -1

Query: 615 LFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDIV 436
           L+QMDVK AFLNG + E+V++EQP GF   NFPN+V  L+KALYGLKQAPRAWYE+L   
Sbjct: 54  LYQMDVKSAFLNGFINEEVYVEQPPGFQSFNFPNNVFRLKKALYGLKQAPRAWYERLSKF 113

Query: 435 LVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSLH 256
           L+ KGF+    D TL++   ++ ++LV++YVDDI+FG+T++ + + F++ M   FEMS+ 
Sbjct: 114 LLKKGFKMGKIDTTLFIKTKDNGMLLVQIYVDDIIFGATNVSLCEEFSKCMHSEFEMSMM 173

Query: 255 QELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
            EL  FLGLQI+QL+ G  ++   Y+ +LL++FNM   K
Sbjct: 174 GELNFFLGLQIKQLKEGTFINQAKYIRDLLKRFNMKEAK 212



 Score = 47.0 bits (110), Expect(2) = 3e-48
 Identities = 22/47 (46%), Positives = 30/47 (63%)
 Frame = -3

Query: 142 KTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
           KT+ TPM+S   +  D  G   + T Y  MIGSLLY +++RPDI +S
Sbjct: 212 KTMKTPMSSSIKLDMDEKGKPINSTMYRGMIGSLLYLTASRPDIMYS 258


>emb|CAD40455.2| OSJNBa0041M21.13 [Oryza sativa Japonica Group]
           gi|38343997|emb|CAD40362.2| OSJNBa0093P23.8 [Oryza
           sativa Japonica Group]
          Length = 711

 Score =  162 bits (409), Expect(2) = 3e-48
 Identities = 80/160 (50%), Positives = 111/160 (69%)
 Frame = -1

Query: 618 KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
           KL+QMDVK AFLNG ++E+++++QP GF + +FPNHV  L K LYGLKQAPRAWY++L  
Sbjct: 423 KLYQMDVKSAFLNGFIQEEIYVKQPPGFENPDFPNHVFKLSKDLYGLKQAPRAWYDRLKN 482

Query: 438 VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
            L++KGF     D TL+VLK+ D+ + V++YVDDI+FG ++  +   FA  M   FEMS+
Sbjct: 483 FLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHALVVEFAETMRREFEMSM 542

Query: 258 HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
             EL ++LGLQI+Q   GI V    Y  +LL++F M   K
Sbjct: 543 MVELSYYLGLQIKQTPQGIFVHQTKYTKDLLRRFKMENCK 582



 Score = 56.6 bits (135), Expect(2) = 3e-48
 Identities = 25/54 (46%), Positives = 37/54 (68%)
 Frame = -3

Query: 163 KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
           + + +NCK I+TP+ S  ++  D DG + D+  Y SMI SLLY ++ RPDIQF+
Sbjct: 575 RFKMENCKPISTPIGSTAVLDPDEDGETVDQKEYRSMIESLLYLTAYRPDIQFA 628


>gb|AAW57789.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1799

 Score =  160 bits (404), Expect(2) = 6e-48
 Identities = 83/160 (51%), Positives = 106/160 (66%)
 Frame = -1

Query: 618  KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
            KLFQMDVK AFLNG ++E+V+++QP GF +  FPNHV  L KALYGLKQAPRAWYE+L  
Sbjct: 1393 KLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQAPRAWYERLKT 1452

Query: 438  VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
             L+  GF+  + D TL+ L      +LV++YVDDI+FG +S  +   F   M   FEMS+
Sbjct: 1453 FLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFFDVMSREFEMSM 1512

Query: 258  HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
              EL  FLGLQI+Q + GI V    Y   LL+KF+M   K
Sbjct: 1513 MGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCK 1552



 Score = 57.4 bits (137), Expect(2) = 6e-48
 Identities = 27/54 (50%), Positives = 34/54 (62%)
 Frame = -3

Query: 163  KIQYDNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
            K    +CK I TPMA+   +  D DG   D+  Y SMIGSLLY +++RPDI FS
Sbjct: 1545 KFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFS 1598


>gb|ABA97696.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1514

 Score =  159 bits (402), Expect(2) = 6e-48
 Identities = 82/160 (51%), Positives = 108/160 (67%)
 Frame = -1

Query: 618  KLFQMDVKGAFLNGDLKEQVFMEQPVGFVDQNFPNHVCYLQKALYGLKQAPRAWYEKLDI 439
            KL+QMDVK AFLNG ++E+V+++QP GF +  FPNHV  L KALYGLKQAPRAWY++L  
Sbjct: 1108 KLYQMDVKSAFLNGFIQEEVYVKQPPGFENPYFPNHVFKLSKALYGLKQAPRAWYDRLKN 1167

Query: 438  VLVSKGFQKASNDDTLYVLKYEDHIILVEVYVDDILFGSTSIDVSDMFARWMMESFEMSL 259
             L+ KGF     D TL+VLK+ D+ + V +YVDDI+FG ++  +   FA  M   FEMS+
Sbjct: 1168 FLLVKGFTMGKVDKTLFVLKHGDNQLFVHIYVDDIIFGCSTHALVVDFAETMRREFEMSM 1227

Query: 258  HQELKHFLGLQIRQLENGIRVSHGTYVNNLLQKFNMITVK 139
              EL +FLGLQI+Q   G  V    Y+ +LL+ F M   K
Sbjct: 1228 MGELSYFLGLQIKQTPQGTFVHQTKYMKDLLRLFKMENCK 1267



 Score = 58.2 bits (139), Expect(2) = 6e-48
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = -3

Query: 151  DNCKTITTPMASRELIHKDVDGPSFDETTYHSMIGSLLYASSTRPDIQFS 2
            +NCK I+TP+ S  ++  D DG + D+  Y SMIGSLLY +++ PDIQFS
Sbjct: 1264 ENCKPISTPIGSTAVLDPDEDGEAVDQKEYRSMIGSLLYLTASWPDIQFS 1313