BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00023870
         (548 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO73525.1| gag-pol polyprotein [Glycine max]                      143   3e-32
gb|AAO73529.1| gag-pol polyprotein [Glycine max]                      142   5e-32
gb|AAO73521.1| gag-pol polyprotein [Glycine max]                      141   9e-32
gb|AAO73523.1| gag-pol polyprotein [Glycine max]                      141   9e-32
gb|AAO73527.1| gag-pol polyprotein [Glycine max]                      140   2e-31
gb|AAC64917.1| gag-pol polyprotein [Glycine max]                      139   3e-31
gb|AAF18630.1|AC006228_1 F5J5.1 [Arabidopsis thaliana]                137   2e-30
emb|CAN62791.1| hypothetical protein VITISV_024905 [Vitis vinifera]   136   3e-30
emb|CAN65521.1| hypothetical protein VITISV_025368 [Vitis vinifera]   130   3e-28
ref|XP_006598505.1| PREDICTED: uncharacterized protein LOC102667...   128   8e-28
gb|AAC49502.1| Pol [Zea mays]                                         128   1e-27
gb|AAM94552.1| putative polyprotein [Oryza sativa Japonica Group]     127   1e-27
gb|ABG66113.1| retrotransposon protein, putative, Ty1-copia subc...   127   1e-27
ref|XP_006577547.1| PREDICTED: uncharacterized protein LOC102662...   127   2e-27
gb|AEJ07944.1| Opie1 putative pol protein [Zea diploperennis]         127   2e-27
emb|CAH66897.1| OSIGBa0099L20.12 [Oryza sativa Indica Group]          126   4e-27
gb|AAV31277.1| putative polyprotein [Oryza sativa Japonica Group]     126   4e-27
gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-...   125   5e-27
gb|AAK00427.2| Putative copia-type pol polyprotein [Oryza sativa...   125   5e-27
gb|ABF97883.1| retrotransposon protein, putative, unclassified [...   125   5e-27

>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  143 bits (360), Expect = 3e-32
 Identities = 80/190 (42%), Positives = 116/190 (61%), Gaps = 9/190 (4%)
 Frame = +2

Query: 2    THPDTNTSLSTRSELSPRPDMLTTSQPINYPS------LLKQVDKCDIIGDVSAGVLTRN 163
            T  D     +  +E + + D  T    IN P       + K   K  IIGD + GV TR+
Sbjct: 992  TSEDNVADTAKSAENAEKSDSTTDEPNINQPDKSPFIRIQKMQPKELIIGDPNRGVTTRS 1051

Query: 164  QHNK---NVCCLSENKDILPTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDDSMNI 334
            +  +   N C +S+   I P +V  AL DE W  AM+EE++Q  + + W LVP+ +  N+
Sbjct: 1052 REIEIVSNSCFVSK---IEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNV 1108

Query: 335  ISSKWVFKNKYDERG*FTRKRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMALSAKL 514
            I +KW+FKNK +E G  TR +ARLVA+G+ QIEGVDF+ETF+PVAR+E++  L+ ++  L
Sbjct: 1109 IGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACIL 1168

Query: 515  RVKLFQMDVK 544
            + KL+QMDVK
Sbjct: 1169 KFKLYQMDVK 1178


>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
          Length = 1577

 Score =  142 bits (358), Expect = 5e-32
 Identities = 80/183 (43%), Positives = 113/183 (61%), Gaps = 5/183 (2%)
 Frame = +2

Query: 11   DTNTSLSTRSELSPRPDMLTTSQPINYPSLL--KQVDKCDIIGDVSAGVLTRNQHNK--- 175
            DT  S           D    +QP   PS+   K   K  IIGD + GV TR++  +   
Sbjct: 1000 DTAKSAENAENSDSATDEPNINQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSREIEIVS 1059

Query: 176  NVCCLSENKDILPTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDDSMNIISSKWVF 355
            N C +S+   I P +V  AL DE W  AM+EE++Q  + + W LVP+ +  N+I +KW+F
Sbjct: 1060 NSCFVSK---IEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIF 1116

Query: 356  KNKYDERG*FTRKRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMALSAKLRVKLFQM 535
            KNK +E G  TR +ARLVA+G+ QIEGVDF+ETF+PVAR+E++  L+ ++  L+ KL+QM
Sbjct: 1117 KNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQM 1176

Query: 536  DVK 544
            DVK
Sbjct: 1177 DVK 1179


>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
          Length = 1574

 Score =  141 bits (356), Expect = 9e-32
 Identities = 80/190 (42%), Positives = 114/190 (60%), Gaps = 9/190 (4%)
 Frame = +2

Query: 2    THPDTNTSLSTRSELSPRPDMLTTSQPINYPS------LLKQVDKCDIIGDVSAGVLTRN 163
            T  D     +   E +   D  T    IN P       + K   K  IIGD + GV TR+
Sbjct: 990  TSGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRS 1049

Query: 164  QHNK---NVCCLSENKDILPTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDDSMNI 334
            +  +   N C +S+   I P +V  AL DE W  AM+EE++Q  + + W LVP+ +  N+
Sbjct: 1050 REVEIVSNSCFVSK---IEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNV 1106

Query: 335  ISSKWVFKNKYDERG*FTRKRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMALSAKL 514
            I +KW+FKNK +E G  TR +ARLVA+G+ QIEGVDF+ETF+PVAR+E++  L+ ++  L
Sbjct: 1107 IGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACIL 1166

Query: 515  RVKLFQMDVK 544
            + KL+QMDVK
Sbjct: 1167 KFKLYQMDVK 1176


>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  141 bits (356), Expect = 9e-32
 Identities = 80/190 (42%), Positives = 114/190 (60%), Gaps = 9/190 (4%)
 Frame = +2

Query: 2    THPDTNTSLSTRSELSPRPDMLTTSQPINYPS------LLKQVDKCDIIGDVSAGVLTRN 163
            T  D     +   E +   D  T    IN P       + K   K  IIGD + GV TR+
Sbjct: 992  TSGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRS 1051

Query: 164  QHNK---NVCCLSENKDILPTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDDSMNI 334
            +  +   N C +S+   I P +V  AL DE W  AM+EE++Q  + + W LVP+ +  N+
Sbjct: 1052 REVEIVSNSCFVSK---IEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNV 1108

Query: 335  ISSKWVFKNKYDERG*FTRKRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMALSAKL 514
            I +KW+FKNK +E G  TR +ARLVA+G+ QIEGVDF+ETF+PVAR+E++  L+ ++  L
Sbjct: 1109 IGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACIL 1168

Query: 515  RVKLFQMDVK 544
            + KL+QMDVK
Sbjct: 1169 KFKLYQMDVK 1178


>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  140 bits (354), Expect = 2e-31
 Identities = 79/187 (42%), Positives = 113/187 (60%), Gaps = 9/187 (4%)
 Frame = +2

Query: 11   DTNTSLSTRSELSPRPDMLTTSQPINYPS------LLKQVDKCDIIGDVSAGVLTRNQHN 172
            D     +   E +   D  T    IN P       + K   K  IIGD + GV TR++  
Sbjct: 995  DNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRSREV 1054

Query: 173  K---NVCCLSENKDILPTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDDSMNIISS 343
            +   N C +S+   I P +V  AL DE W  AM+EE++Q  + + W LVP+ +  N+I +
Sbjct: 1055 EIVSNSCFVSK---IEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGT 1111

Query: 344  KWVFKNKYDERG*FTRKRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMALSAKLRVK 523
            KW+FKNK +E G  TR +ARLVA+G+ QIEGVDF+ETF+PVAR+E++  L+ ++  L+ K
Sbjct: 1112 KWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFK 1171

Query: 524  LFQMDVK 544
            L+QMDVK
Sbjct: 1172 LYQMDVK 1178


>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
          Length = 1550

 Score =  139 bits (351), Expect = 3e-31
 Identities = 79/183 (43%), Positives = 112/183 (61%), Gaps = 5/183 (2%)
 Frame = +2

Query: 11   DTNTSLSTRSELSPRPDMLTTSQPINYPSLL--KQVDKCDIIGDVSAGVLTRNQHNK--- 175
            DT  S           D    +QP   PS+   K   K  IIGD + GV TR++  +   
Sbjct: 973  DTAKSAENAENSDSATDEPNINQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSREIEIIS 1032

Query: 176  NVCCLSENKDILPTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDDSMNIISSKWVF 355
            N C +S+   I P +V  AL DE W  AM+EE++Q  + + W LVP+ +  N+I +KW+F
Sbjct: 1033 NSCFVSK---IEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIF 1089

Query: 356  KNKYDERG*FTRKRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMALSAKLRVKLFQM 535
            KNK +E G  TR +ARLVA+G+ QIEGVDF+ETF+P AR+E++  L+ ++  L+ KL+QM
Sbjct: 1090 KNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPGARLESIRLLLGVACILKFKLYQM 1149

Query: 536  DVK 544
            DVK
Sbjct: 1150 DVK 1152


>gb|AAF18630.1|AC006228_1 F5J5.1 [Arabidopsis thaliana]
          Length = 1463

 Score =  137 bits (344), Expect = 2e-30
 Identities = 71/181 (39%), Positives = 109/181 (60%), Gaps = 3/181 (1%)
 Frame = +2

Query: 11   DTNTSLSTRSELSPRPDMLTTSQPINYPSLLKQVDKCDIIGDVSAGVLTRN---QHNKNV 181
            ++ TS        PR    T+S  +  P   K   + D+IG++    +TR     +   +
Sbjct: 949  ESGTSKDVEQTTEPR----TSSSRLTVP---KSHSETDVIGELDGDRVTRGIKMNYRDMI 1001

Query: 182  CCLSENKDILPTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDDSMNIISSKWVFKN 361
                    I P ++  AL+DE WY A  EE++   + + W LVP+   +N++ +KW+FKN
Sbjct: 1002 LFTCFVSSIEPKNIEIALEDEFWYQACHEELNHFSRHEVWDLVPRQVHVNVVGTKWIFKN 1061

Query: 362  KYDERG*FTRKRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMALSAKLRVKLFQMDV 541
            K DE G  TR RARLVA+G++Q+EG+DF+ETF+PVAR+E++  L+ +S  L++KLFQMDV
Sbjct: 1062 KTDEEGNVTRNRARLVAQGYSQVEGIDFDETFAPVARLESIRLLLGISCLLKIKLFQMDV 1121

Query: 542  K 544
            K
Sbjct: 1122 K 1122


>emb|CAN62791.1| hypothetical protein VITISV_024905 [Vitis vinifera]
          Length = 956

 Score =  136 bits (343), Expect = 3e-30
 Identities = 68/145 (46%), Positives = 96/145 (66%), Gaps = 4/145 (2%)
 Frame = +2

Query: 122 DIIGDVSAGVLTRNQHNKN----VCCLSENKDILPTSVAAALKDEGWYTAMKEEIDQIHK 289
           ++IG+    ++TR Q   N    VC  S+   I P +V  AL DE W  A+ EE++Q  +
Sbjct: 463 NVIGNYEDSMVTRRQSKLNEVSYVCYTSQ---IEPKNVEEALNDEAWVDALHEELNQFSR 519

Query: 290 TKTWILVPKDDSMNIISSKWVFKNKYDERG*FTRKRARLVAKGFNQIEGVDFEETFSPVA 469
              W LVP+   +N+I +KW+FKNK DE G   R +ARLVA+GF QIEG+DF+ETF+PVA
Sbjct: 520 NDVWFLVPRPKDVNVIGTKWIFKNKMDENGVIVRNKARLVAQGFXQIEGIDFDETFAPVA 579

Query: 470 RMETV*ALMALSAKLRVKLFQMDVK 544
           R+E++  L+A++   + KLFQMDVK
Sbjct: 580 RLESIRILLAVACVWKFKLFQMDVK 604


>emb|CAN65521.1| hypothetical protein VITISV_025368 [Vitis vinifera]
          Length = 1291

 Score =  130 bits (326), Expect = 3e-28
 Identities = 64/142 (45%), Positives = 92/142 (64%), Gaps = 1/142 (0%)
 Frame = +2

Query: 122  DIIGDVSAGVLTRNQHNKN-VCCLSENKDILPTSVAAALKDEGWYTAMKEEIDQIHKTKT 298
            ++IG+    ++TR Q   N V  +     I P +V  AL DE W  A+ EE++Q  +   
Sbjct: 780  NVIGNYEDIMVTRRQSKLNEVNYVFYTSQIEPKNVEEALNDEAWVEALHEELNQFSRNDV 839

Query: 299  WILVPKDDSMNIISSKWVFKNKYDERG*FTRKRARLVAKGFNQIEGVDFEETFSPVARME 478
            W LVP+   +N+I +KW+FKNK DE G   R +A LVA+GF QIEG+DF+ETF+PVAR+E
Sbjct: 840  WFLVPRPKDVNVIGTKWIFKNKMDENGVIXRNKAXLVAQGFKQIEGIDFDETFAPVARLE 899

Query: 479  TV*ALMALSAKLRVKLFQMDVK 544
            ++  L+ ++   + KLFQMDVK
Sbjct: 900  SICILLVVACVWKFKLFQMDVK 921


>ref|XP_006598505.1| PREDICTED: uncharacterized protein LOC102667806, partial [Glycine
           max]
          Length = 517

 Score =  128 bits (322), Expect = 8e-28
 Identities = 58/111 (52%), Positives = 83/111 (74%)
 Frame = +2

Query: 212 PTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDDSMNIISSKWVFKNKYDERG*FTR 391
           P +V  AL DE W  AM+EE++Q  + + W LVP+ +  N+I +KW+FKNK +E G  TR
Sbjct: 5   PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITR 64

Query: 392 KRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMALSAKLRVKLFQMDVK 544
            +ARLVA+G+ QIEGVDF+ETF+PVAR+E++  L+ ++  L+ KL+QMDVK
Sbjct: 65  NKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVK 115


>gb|AAC49502.1| Pol [Zea mays]
          Length = 1068

 Score =  128 bits (321), Expect = 1e-27
 Identities = 68/146 (46%), Positives = 94/146 (64%), Gaps = 6/146 (4%)
 Frame = +2

Query: 125 IIGDVSAGVLTRN------QHNKNVCCLSENKDILPTSVAAALKDEGWYTAMKEEIDQIH 286
           I+GD+S GV TR+      +HN  V        I P  V  AL D  W  AM+EE++   
Sbjct: 531 ILGDISKGVTTRSRLVNFCEHNSFV------SSIEPFRVEEALLDPDWVLAMQEELNNFK 584

Query: 287 KTKTWILVPKDDSMNIISSKWVFKNKYDERG*FTRKRARLVAKGFNQIEGVDFEETFSPV 466
           + + W LVP+    N++ +KWVF+NK DERG  TR +ARLVAKG+ Q+ G+DFEETF+PV
Sbjct: 585 RNEVWTLVPRP-KQNVVGTKWVFRNKQDERGVVTRNKARLVAKGYAQVAGLDFEETFAPV 643

Query: 467 ARMETV*ALMALSAKLRVKLFQMDVK 544
           AR+E++  L+A +A    +L+QMDVK
Sbjct: 644 ARLESIRILLAYAAHHSFRLYQMDVK 669


>gb|AAM94552.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1584

 Score =  127 bits (320), Expect = 1e-27
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 6/171 (3%)
 Frame = +2

Query: 50   PRPDMLTTSQPINYPSLLKQVDKCDIIGDVSAGVLTRN------QHNKNVCCLSENKDIL 211
            P P  + T+   ++P     +D+  ++GD++ GV TR+      +H   V CL       
Sbjct: 1028 PMPPRIHTALSKDHP-----IDQ--VLGDINKGVQTRSRVASICEHYSFVSCLK------ 1074

Query: 212  PTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDDSMNIISSKWVFKNKYDERG*FTR 391
            P  V   L D  W  AM EE++   + K WILV +    N+I +KW+F+NK DE G   R
Sbjct: 1075 PKHVDEVLCDPDWMNAMHEELNNFARNKVWILVERPRDHNVIGTKWIFRNKQDENGLVVR 1134

Query: 392  KRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMALSAKLRVKLFQMDVK 544
             +ARLVA+GF Q+EG+DF ETF+PVAR+E +  L+A ++   +KLFQMDVK
Sbjct: 1135 NKARLVAQGFTQVEGLDFGETFAPVARLEAIRILLAFASCFDIKLFQMDVK 1185


>gb|ABG66113.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2112

 Score =  127 bits (320), Expect = 1e-27
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 6/171 (3%)
 Frame = +2

Query: 50   PRPDMLTTSQPINYPSLLKQVDKCDIIGDVSAGVLTRN------QHNKNVCCLSENKDIL 211
            P P  + T+   ++P     +D+  ++GD++ GV TR+      +H   V CL       
Sbjct: 1028 PMPPRIHTALSKDHP-----IDQ--VLGDINKGVQTRSRVASICEHYSFVSCLK------ 1074

Query: 212  PTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDDSMNIISSKWVFKNKYDERG*FTR 391
            P  V   L D  W  AM EE++   + K WILV +    N+I +KW+F+NK DE G   R
Sbjct: 1075 PKHVDEVLCDPDWMNAMHEELNNFARNKVWILVERPRDHNVIGTKWIFRNKQDENGLVVR 1134

Query: 392  KRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMALSAKLRVKLFQMDVK 544
             +ARLVA+GF Q+EG+DF ETF+PVAR+E +  L+A ++   +KLFQMDVK
Sbjct: 1135 NKARLVAQGFTQVEGLDFGETFAPVARLEAIRILLAFASCFDIKLFQMDVK 1185


>ref|XP_006577547.1| PREDICTED: uncharacterized protein LOC102662042 [Glycine max]
          Length = 1857

 Score =  127 bits (319), Expect = 2e-27
 Identities = 58/111 (52%), Positives = 82/111 (73%)
 Frame = +2

Query: 212  PTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDDSMNIISSKWVFKNKYDERG*FTR 391
            P +V  AL DE W  AM+EE++Q  + + W LVP+    N+I +KW+FKNK +E G  TR
Sbjct: 1364 PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPKGTNVIGTKWIFKNKTNEEGVITR 1423

Query: 392  KRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMALSAKLRVKLFQMDVK 544
             +ARLVA+G+ QIEGVDF+ETF+PVAR+E++  L+ ++  L+ KL+QMDVK
Sbjct: 1424 NKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVK 1474


>gb|AEJ07944.1| Opie1 putative pol protein [Zea diploperennis]
          Length = 1065

 Score =  127 bits (318), Expect = 2e-27
 Identities = 66/140 (47%), Positives = 91/140 (65%)
 Frame = +2

Query: 125 IIGDVSAGVLTRNQHNKNVCCLSENKDILPTSVAAALKDEGWYTAMKEEIDQIHKTKTWI 304
           I+GD+S GV TR++        S    I P  V  AL D  W  AM+EE++   + + W 
Sbjct: 528 ILGDISKGVTTRSRLANFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVWT 587

Query: 305 LVPKDDSMNIISSKWVFKNKYDERG*FTRKRARLVAKGFNQIEGVDFEETFSPVARMETV 484
           LVP+    N++ +KWVF+NK DE G  TR +ARLVAKG+ Q+ G+DFEETF+PVAR+E++
Sbjct: 588 LVPRP-KQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESI 646

Query: 485 *ALMALSAKLRVKLFQMDVK 544
             L+A +A    +LFQMDVK
Sbjct: 647 RILLAYAAHHSFRLFQMDVK 666


>emb|CAH66897.1| OSIGBa0099L20.12 [Oryza sativa Indica Group]
          Length = 711

 Score =  126 bits (316), Expect = 4e-27
 Identities = 72/194 (37%), Positives = 104/194 (53%), Gaps = 15/194 (7%)
 Frame = +2

Query: 8   PDTNTSLSTRSELSPRPDMLTTSQ--------PINYPSLLKQVDKCD-IIGDVSAGVLTR 160
           P T+T     +  SP    +   +        P+   + L +    D ++GD+S GV TR
Sbjct: 125 PSTSTQDEPSTSASPSQAQVEVEEEKAQDPPMPLRIHTALSKDHPIDQVLGDISKGVQTR 184

Query: 161 N------QHNKNVCCLSENKDILPTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDD 322
           +      +H   V CL       P  V  AL D  W  AM EE++   + K W LV +  
Sbjct: 185 SRVASICEHYSFVSCLE------PKHVDEALCDPDWMNAMHEELNNFARNKVWTLVERPR 238

Query: 323 SMNIISSKWVFKNKYDERG*FTRKRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMAL 502
             N+I +KW+F+NK DE G   R +ARLVA+GF Q+EG+DF ETF+P+ R+E +  L+A 
Sbjct: 239 DHNVIGTKWIFRNKQDENGLVVRNKARLVAQGFTQVEGLDFGETFAPIVRLEAIRILLAF 298

Query: 503 SAKLRVKLFQMDVK 544
           ++   +KLFQMDVK
Sbjct: 299 ASCFDIKLFQMDVK 312


>gb|AAV31277.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1577

 Score =  126 bits (316), Expect = 4e-27
 Identities = 71/176 (40%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
 Frame = +2

Query: 35   RSELSPRPDMLTTSQPINYPSLLKQVDKCDIIGDVSAGVLTRN------QHNKNVCCLSE 196
            +++  P P  + T+   ++P     +D+  ++GD+S GV TR+      +H   V CL  
Sbjct: 1032 KAQEPPMPPRIHTALSKDHP-----IDQ--VLGDISKGVQTRSRVTSICEHYSFVSCLER 1084

Query: 197  NKDILPTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDDSMNIISSKWVFKNKYDER 376
                    V  AL D  W  AM EE+    + K W LV +    N+I +KWVF+NK DE 
Sbjct: 1085 KH------VDEALCDPDWMNAMHEELKNFARNKVWTLVERPRDHNVIGTKWVFRNKQDEN 1138

Query: 377  G*FTRKRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMALSAKLRVKLFQMDVK 544
            G   R +ARLVA+GF Q+EG+DF ETF+PVAR+E +  L+A ++   +KLFQMDVK
Sbjct: 1139 GLVVRNKARLVAQGFTQVEGLDFGETFAPVARLEAICILLAFASCFDIKLFQMDVK 1194


>gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77552672|gb|ABA95469.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 709

 Score =  125 bits (315), Expect = 5e-27
 Identities = 76/185 (41%), Positives = 105/185 (56%), Gaps = 6/185 (3%)
 Frame = +2

Query: 8   PDTNTSLSTRSELSPRPDMLTTSQPINYPSLLKQVDKCDIIGDVSAGVLTRNQHNKNVCC 187
           P T+TS ST +E     D+ T   P++   + ++     IIG++            +VC 
Sbjct: 137 PKTSTSTSTGTERGSTSDVTT---PLH---IQRRHPPEQIIGNIGERTTRSKVTTHDVCA 190

Query: 188 LS------ENKDILPTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDDSMNIISSKW 349
            S      E+KD     V+ AL DE W  AM EE++   + K W LV      NII +KW
Sbjct: 191 NSAFVASFESKD-----VSHALTDESWINAMHEELENFERNKVWTLVETKFGHNIIGTKW 245

Query: 350 VFKNKYDERG*FTRKRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMALSAKLRVKLF 529
           VFKNK +E G   R +ARLVA+GF Q+EG+DF+ETF+PVAR+E +  L+A +A    KL+
Sbjct: 246 VFKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAIRHLLAFAASKGFKLY 305

Query: 530 QMDVK 544
           QMDVK
Sbjct: 306 QMDVK 310


>gb|AAK00427.2| Putative copia-type pol polyprotein [Oryza sativa Japonica Group]
            gi|31429784|gb|AAP51786.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1377

 Score =  125 bits (315), Expect = 5e-27
 Identities = 66/146 (45%), Positives = 90/146 (61%), Gaps = 6/146 (4%)
 Frame = +2

Query: 125  IIGDVSAGVLTRN------QHNKNVCCLSENKDILPTSVAAALKDEGWYTAMKEEIDQIH 286
            ++GD+S GV TR+      +H   V CL       P  V  AL D  W  AM EE++   
Sbjct: 891  VLGDISKGVQTRSRVASICEHYSFVSCLE------PKHVDEALCDLDWMNAMHEELNNFA 944

Query: 287  KTKTWILVPKDDSMNIISSKWVFKNKYDERG*FTRKRARLVAKGFNQIEGVDFEETFSPV 466
            + K W LV +    N+I +KWVF+NK DE G   R +ARLVA+GF Q+EG+DF ETF+PV
Sbjct: 945  RNKVWTLVERPRDHNVIGTKWVFRNKQDENGLVVRNKARLVAQGFTQVEGLDFGETFAPV 1004

Query: 467  ARMETV*ALMALSAKLRVKLFQMDVK 544
            AR++ +  L+A ++   +KLFQMDVK
Sbjct: 1005 ARLKAILILLAFASCFDIKLFQMDVK 1030


>gb|ABF97883.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1441

 Score =  125 bits (315), Expect = 5e-27
 Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 6/171 (3%)
 Frame = +2

Query: 50   PRPDMLTTSQPINYPSLLKQVDKCDIIGDVSAGVLTRN------QHNKNVCCLSENKDIL 211
            P P  + T+   ++P     +D+  ++GD+S GV TR+      +H   V CL       
Sbjct: 885  PMPPRIHTALSKDHP-----IDQ--VLGDISKGVQTRSRVASICEHYSFVSCLE------ 931

Query: 212  PTSVAAALKDEGWYTAMKEEIDQIHKTKTWILVPKDDSMNIISSKWVFKNKYDERG*FTR 391
            P  V  AL D  W  AM EE++   + K W LV +    N+I +KWVF+NK DE G   R
Sbjct: 932  PKHVDEALCDPDWMNAMHEELNNFARNKVWTLVERPRDHNVIGTKWVFRNKQDENGLVVR 991

Query: 392  KRARLVAKGFNQIEGVDFEETFSPVARMETV*ALMALSAKLRVKLFQMDVK 544
             +ARLVA+GF Q+EG+DF ETF+PV R+E +   +A ++   +KLFQMDVK
Sbjct: 992  NKARLVAQGFTQVEGLDFGETFAPVTRLEAIRIFLAFASCFDIKLFQMDVK 1042