BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00023817
         (2710 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO73521.1| gag-pol polyprotein [Glycine max]                      375   e-128
gb|AAO73527.1| gag-pol polyprotein [Glycine max]                      374   e-127
gb|AAO73529.1| gag-pol polyprotein [Glycine max]                      372   e-127
gb|AAO73523.1| gag-pol polyprotein [Glycine max]                      372   e-127
gb|AAC64917.1| gag-pol polyprotein [Glycine max]                      368   e-124
gb|AAO73525.1| gag-pol polyprotein [Glycine max]                      363   e-123
ref|XP_006577547.1| PREDICTED: uncharacterized protein LOC102662...   360   e-119
gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty...   358   e-117
gb|AAP53706.1| retrotransposon protein, putative, unclassified [...   348   e-117
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]                347   e-114
gb|ABE88110.1| Reverse transcriptase (RNA-dependent DNA polymera...   347   e-114
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]                349   e-114
gb|ABF67921.1| Ji1 putative pol protein [Zea mays]                    346   e-114
gb|AAO37957.1| putative gag-pol polyprotein [Oryza sativa Japoni...   333   e-114
emb|CCI55376.1| PH01B035L11.21 [Phyllostachys edulis]                 340   e-113
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]         345   e-113
gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-...   341   e-113
emb|CAE03600.2| OSJNBb0004A17.2 [Oryza sativa Japonica Group]         332   e-113
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s...   332   e-113
gb|ABF93543.1| retrotransposon protein, putative, unclassified [...   332   e-113

>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
          Length = 1574

 Score =  375 bits (963), Expect(2) = e-128
 Identities = 204/504 (40%), Positives = 316/504 (62%), Gaps = 3/504 (0%)
 Frame = +1

Query: 1    SSTTKGHRCHNQITRKILETSHVKIKEVSIQETKSSIPDNVKINGSPQIIQSSVQPLAQE 180
            S+ ++ +R  N  TR ++E+ +V + ++S    K  + ++V+ +G       +V   A+ 
Sbjct: 949  STNSRAYRVFNSRTRTVMESINVVVDDLS-PARKKDVEEDVRTSGD------NVADAAKS 1001

Query: 181  LKNAIIKGPENSVXXXXXXXXXXXXXTKKHEDKFGKLVYHNPK*VLGNPSGGIKTISA-- 354
             +NA     ENS               K+   +  K+  H  + ++G+P+ G+ T S   
Sbjct: 1002 GENA-----ENS--DSATDESNINQPDKRSSTRIQKM--HPKELIIGDPNRGVTTRSREV 1052

Query: 355  -LRTEKCCVVIEEDIPHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNK 531
             + +  C V   E  P  V+ A  D+ W  AM EE+ Q  +   W+LV + E  N++  K
Sbjct: 1053 EIVSNSCFVSKIE--PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTK 1110

Query: 532  WIFKNKRDENGKISRRKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKL 711
            WIFKNK +E G I+R KARLVA+G+TQ+ G+D++ETF PVAR+++I++L+ V   LK KL
Sbjct: 1111 WIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKL 1170

Query: 712  YQMNVKEAFLNKDLREEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFL 891
            YQM+VK AFLN  L EEVY+++P+GF     P++V RLKKA+Y LKQA +AW+E+L  FL
Sbjct: 1171 YQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFL 1230

Query: 892  LKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQ 1071
             + G++K  +D TL+V +   +++I QIYVDDIVFG  ++E+   FV++M+  FEMS+  
Sbjct: 1231 TQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVG 1290

Query: 1072 QLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVD 1251
            +L +FLG+Q  Q +   F+SQ  Y KN+V+ FG++      TP  T + L K+E    VD
Sbjct: 1291 ELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVD 1350

Query: 1252 GSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFY 1431
             SLYRS+I SL+Y+TA+RPDI++A+G+ +R+QA+P+ISH    KRIL+Y++ T++ G+ Y
Sbjct: 1351 QSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMY 1410

Query: 1432 NSESIWELTGYIDSNWTGNTKDKK 1503
               S   L GY D++W G+  D+K
Sbjct: 1411 CHCSNPMLVGYCDADWAGSADDRK 1434



 Score =  112 bits (280), Expect(2) = e-128
 Identities = 60/141 (42%), Positives = 89/141 (63%), Gaps = 5/141 (3%)
 Frame = +2

Query: 1499 KSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVDLNY 1678
            KSTSG  F +GN  I+W S+KQ CV+LST++ EYIAA +S SQ+ W+K  L+   V+ + 
Sbjct: 1434 KSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDV 1493

Query: 1679 PIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLREKG-----SKWNRSRLEQTKYILTK 1843
             + +  DN +A+N+ KNP+ H R+KH+DI++HY+R+       +  +    EQ   I TK
Sbjct: 1494 -MTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTK 1552

Query: 1844 EIDQTPFKYLRNKLGMIQFEE 1906
             +D   F+ LR KLG+   EE
Sbjct: 1553 ALDANQFEKLRGKLGICLLEE 1573


>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  374 bits (961), Expect(2) = e-127
 Identities = 199/504 (39%), Positives = 308/504 (61%), Gaps = 3/504 (0%)
 Frame = +1

Query: 1    SSTTKGHRCHNQITRKILETSHVKIKEVSIQETKSSIPDNVKINGSPQIIQSSVQPLAQE 180
            S+ ++ +R  N  TR ++E+ +V + ++S    K               ++  V+ L   
Sbjct: 951  STNSRAYRVFNSRTRTVMESINVVVDDLSPARKKD--------------VEEDVRTLGDN 996

Query: 181  LKNAIIKGPENSVXXXXXXXXXXXXXTKKHEDKFGKLVYHNPK*VLGNPSGGIKTISA-- 354
            + +A   G                   K+   +  K+  H  + ++G+P+ G+ T S   
Sbjct: 997  VADAAKSGENAENSDSATDESNINQPDKRSSTRIQKM--HPKELIIGDPNRGVTTRSREV 1054

Query: 355  -LRTEKCCVVIEEDIPHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNK 531
             + +  C V   E  P  V+ A  D+ W  AM EE+ Q  +   W+LV + E  N++  K
Sbjct: 1055 EIVSNSCFVSKIE--PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTK 1112

Query: 532  WIFKNKRDENGKISRRKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKL 711
            WIFKNK +E G I+R KARLVA+G+TQ+ G+D++ETF PVAR+++I++L+ V   LK KL
Sbjct: 1113 WIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKL 1172

Query: 712  YQMNVKEAFLNKDLREEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFL 891
            YQM+VK AFLN  L EEVY+++P+GF     P++V RLKKA+Y LKQA +AW+E+L  FL
Sbjct: 1173 YQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFL 1232

Query: 892  LKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQ 1071
             + G++K  +D TL+V +   +++I QIYVDDIVFG  ++E+   FV++M+  FEMS+  
Sbjct: 1233 TQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVG 1292

Query: 1072 QLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVD 1251
            +L +FLG+Q  Q +   F+SQ  Y KN+V+ FG++      TP  T + L K+E    VD
Sbjct: 1293 ELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVD 1352

Query: 1252 GSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFY 1431
             SLYRS+I SL+Y+TA+RPDI++A+G+ +R+QA+P+ISH    KRIL+Y++ T++ G+ Y
Sbjct: 1353 QSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMY 1412

Query: 1432 NSESIWELTGYIDSNWTGNTKDKK 1503
               S   L GY D++W G+  D+K
Sbjct: 1413 CHCSNPMLVGYCDADWAGSADDRK 1436



 Score =  112 bits (280), Expect(2) = e-127
 Identities = 60/141 (42%), Positives = 89/141 (63%), Gaps = 5/141 (3%)
 Frame = +2

Query: 1499 KSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVDLNY 1678
            KSTSG  F +GN  I+W S+KQ CV+LST++ EYIAA +S SQ+ W+K  L+   V+ + 
Sbjct: 1436 KSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDV 1495

Query: 1679 PIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLREKG-----SKWNRSRLEQTKYILTK 1843
             + +  DN +A+N+ KNP+ H R+KH+DI++HY+R+       +  +    EQ   I TK
Sbjct: 1496 -MTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTK 1554

Query: 1844 EIDQTPFKYLRNKLGMIQFEE 1906
             +D   F+ LR KLG+   EE
Sbjct: 1555 ALDANQFEKLRGKLGICLLEE 1575


>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
          Length = 1577

 Score =  372 bits (956), Expect(2) = e-127
 Identities = 202/504 (40%), Positives = 315/504 (62%), Gaps = 3/504 (0%)
 Frame = +1

Query: 1    SSTTKGHRCHNQITRKILETSHVKIKEVSIQETKSSIPDNVKINGSPQIIQSSVQPLAQE 180
            S+ ++ +R  N  TR ++E+ +V + +++    K  + ++V+ +G       +V   A+ 
Sbjct: 952  STNSRAYRVFNSRTRTVMESINVVVDDLT-PARKKDVEEDVRTSGD------NVADTAKS 1004

Query: 181  LKNAIIKGPENSVXXXXXXXXXXXXXTKKHEDKFGKLVYHNPK*VLGNPSGGIKTISA-- 354
             +NA     ENS               K+   +  K+  H  + ++G+P+ G+ T S   
Sbjct: 1005 AENA-----ENS--DSATDEPNINQPDKRPSIRIQKM--HPKELIIGDPNRGVTTRSREI 1055

Query: 355  -LRTEKCCVVIEEDIPHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNK 531
             + +  C V   E  P  V+ A  D+ W  AM EE+ Q  +   W+LV + E  N++  K
Sbjct: 1056 EIVSNSCFVSKIE--PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTK 1113

Query: 532  WIFKNKRDENGKISRRKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKL 711
            WIFKNK +E G I+R KARLVA+G+TQ+ G+D++ETF PVAR+++I++L+ V   LK KL
Sbjct: 1114 WIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKL 1173

Query: 712  YQMNVKEAFLNKDLREEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFL 891
            YQM+VK AFLN  L EE Y+++P+GF     P++V RLKKA+Y LKQA +AW+E+L  FL
Sbjct: 1174 YQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFL 1233

Query: 892  LKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQ 1071
             + G++K  +D TL+V +   +++I QIYVDDIVFG  ++E+   FV++M+  FEMS+  
Sbjct: 1234 TQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVG 1293

Query: 1072 QLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVD 1251
            +L +FLG+Q  Q +   F+SQ  Y KN+V+ FG++      TP  T + L K+E    VD
Sbjct: 1294 ELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVD 1353

Query: 1252 GSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFY 1431
             SLYRS+I SL+Y+TA+RPDI++A+G+ +R+QA+P+ISH    KRIL+Y++ T++ G+ Y
Sbjct: 1354 QSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMY 1413

Query: 1432 NSESIWELTGYIDSNWTGNTKDKK 1503
               S   L GY D++W G+  D+K
Sbjct: 1414 CHCSGSMLVGYCDADWAGSADDRK 1437



 Score =  113 bits (282), Expect(2) = e-127
 Identities = 61/141 (43%), Positives = 89/141 (63%), Gaps = 5/141 (3%)
 Frame = +2

Query: 1499 KSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVDLNY 1678
            KSTSG  F +GN  I+W S+KQ CV+LST++ EYIAA +S SQ+ W+K  L+   V+ + 
Sbjct: 1437 KSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDV 1496

Query: 1679 PIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLREKG-----SKWNRSRLEQTKYILTK 1843
             + +  DN +A+N+ KNP+ H R+KH+DI++HY+RE       +  +    EQ   I TK
Sbjct: 1497 -MTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRELVDDKVITLEHVDTEEQIADIFTK 1555

Query: 1844 EIDQTPFKYLRNKLGMIQFEE 1906
             +D   F+ LR KLG+   EE
Sbjct: 1556 ALDAKQFEKLRGKLGICLLEE 1576


>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  372 bits (955), Expect(2) = e-127
 Identities = 202/504 (40%), Positives = 314/504 (62%), Gaps = 3/504 (0%)
 Frame = +1

Query: 1    SSTTKGHRCHNQITRKILETSHVKIKEVSIQETKSSIPDNVKINGSPQIIQSSVQPLAQE 180
            S+ ++ +R  N  TR ++E+ +V + ++S    K  + ++V+ +G       +V   A+ 
Sbjct: 951  STNSRAYRVFNSRTRTVMESINVVVDDLS-PARKKDVEEDVRTSGD------NVADAAKS 1003

Query: 181  LKNAIIKGPENSVXXXXXXXXXXXXXTKKHEDKFGKLVYHNPK*VLGNPSGGIKTISA-- 354
             +NA     ENS               K+   +  K+  H  + ++G+P+ G+ T S   
Sbjct: 1004 GENA-----ENS--DSATDESNINQPDKRSSTRIQKM--HPKELIIGDPNRGVTTRSREV 1054

Query: 355  -LRTEKCCVVIEEDIPHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNK 531
             + +  C V   E  P  V+ A  D+ W  AM EE+ Q  +   W+LV + E  N++  K
Sbjct: 1055 EIVSNSCFVSKIE--PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTK 1112

Query: 532  WIFKNKRDENGKISRRKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKL 711
            WIFKNK +E G I+R KARLVA+G+TQ+ G+D++ETF PVAR+++I++L+ V   LK KL
Sbjct: 1113 WIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKL 1172

Query: 712  YQMNVKEAFLNKDLREEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFL 891
            YQM+VK AFLN  L EEVY+++P+GF     P++V RLKKA+Y LKQA +AW+E+L  FL
Sbjct: 1173 YQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFL 1232

Query: 892  LKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQ 1071
             + G++K  +D TL+V +   +++I QIYVDDIVFG  ++E+   FV++M+  FEMS+  
Sbjct: 1233 TQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVG 1292

Query: 1072 QLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVD 1251
            +L +FLG+Q  Q +   F+SQ  Y KN+V+ FG++      TP  T + L K+E    VD
Sbjct: 1293 ELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVD 1352

Query: 1252 GSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFY 1431
               YRS+I SL+Y+TA+RPDI++A+G+ +R+QA+P+ISH    KRIL+Y++ T++ G+ Y
Sbjct: 1353 QKPYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMY 1412

Query: 1432 NSESIWELTGYIDSNWTGNTKDKK 1503
               S   L GY D++W G+  D+K
Sbjct: 1413 CHCSSSMLVGYCDADWAGSADDRK 1436



 Score =  112 bits (280), Expect(2) = e-127
 Identities = 60/141 (42%), Positives = 89/141 (63%), Gaps = 5/141 (3%)
 Frame = +2

Query: 1499 KSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVDLNY 1678
            KSTSG  F +GN  I+W S+KQ CV+LST++ EYIAA +S SQ+ W+K  L+   V+ + 
Sbjct: 1436 KSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDV 1495

Query: 1679 PIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLREKG-----SKWNRSRLEQTKYILTK 1843
             + +  DN +A+N+ KNP+ H R+KH+DI++HY+R+       +  +    EQ   I TK
Sbjct: 1496 -MTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTK 1554

Query: 1844 EIDQTPFKYLRNKLGMIQFEE 1906
             +D   F+ LR KLG+   EE
Sbjct: 1555 ALDANQFEKLRGKLGICVLEE 1575


>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
          Length = 1550

 Score =  368 bits (945), Expect(2) = e-124
 Identities = 201/504 (39%), Positives = 313/504 (62%), Gaps = 3/504 (0%)
 Frame = +1

Query: 1    SSTTKGHRCHNQITRKILETSHVKIKEVSIQETKSSIPDNVKINGSPQIIQSSVQPLAQE 180
            S+ ++ +R  N  TR ++E+ +V + +++    K  + ++V+ +G       +V   A+ 
Sbjct: 925  STNSRAYRVFNSRTRTVMESINVVVDDLT-PARKKDVEEDVRTSGD------NVADTAKS 977

Query: 181  LKNAIIKGPENSVXXXXXXXXXXXXXTKKHEDKFGKLVYHNPK*VLGNPSGGIKTISA-- 354
             +NA     ENS               K+   +  K+  H  + ++G+P+ G+ T S   
Sbjct: 978  AENA-----ENS--DSATDEPNINQPDKRPSIRIQKM--HPKELIIGDPNRGVTTRSREI 1028

Query: 355  -LRTEKCCVVIEEDIPHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNK 531
             + +  C V   E  P  V+ A  D+ W  AM EE+ Q  +   W+LV + E  N++  K
Sbjct: 1029 EIISNSCFVSKIE--PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTK 1086

Query: 532  WIFKNKRDENGKISRRKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKL 711
            WIFKNK +E G I+R KARLVA+G+TQ+ G+D++ETF P AR+++I++L+ V   LK KL
Sbjct: 1087 WIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPGARLESIRLLLGVACILKFKL 1146

Query: 712  YQMNVKEAFLNKDLREEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFL 891
            YQM+VK AFLN  L EE Y+++P+GF     P++V RLKKA+Y LKQA +AW+E+L  FL
Sbjct: 1147 YQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFL 1206

Query: 892  LKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQ 1071
             + G++K  +D TL+V +   +++I QIYVDDIVFG  ++E+   FV++M+  FEMS+  
Sbjct: 1207 TQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVG 1266

Query: 1072 QLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVD 1251
            +L +FLG+Q  Q +   F+SQ  Y KN+V+ FG++      TP  T + L K+E    VD
Sbjct: 1267 ELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVD 1326

Query: 1252 GSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFY 1431
             SLYRS+I SL+Y+TA+RPDI++A+G  +R+QA+P+ISH    KRIL+Y++ T++ G+ Y
Sbjct: 1327 QSLYRSMIGSLLYLTASRPDITYAVGGCARYQANPKISHLNQVKRILKYVNGTSDYGIMY 1386

Query: 1432 NSESIWELTGYIDSNWTGNTKDKK 1503
               S   L GY D++W G+  D+K
Sbjct: 1387 CHCSDSMLVGYCDADWAGSVDDRK 1410



 Score =  106 bits (264), Expect(2) = e-124
 Identities = 57/141 (40%), Positives = 87/141 (61%), Gaps = 5/141 (3%)
 Frame = +2

Query: 1499 KSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVDLNY 1678
            KST G  F +G   I+W S+KQ CV+LST++ EYIAA +S SQ+ W+K  L+   V+ + 
Sbjct: 1410 KSTFGGCFYLGTNFISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDV 1469

Query: 1679 PIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLREKG-----SKWNRSRLEQTKYILTK 1843
             + +  DN +A+N+ KNP+ H R+KH+DI++HY+R+       +  +    EQ   I TK
Sbjct: 1470 -MTLYCDNLSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTK 1528

Query: 1844 EIDQTPFKYLRNKLGMIQFEE 1906
             +D   F+ LR KLG+   E+
Sbjct: 1529 ALDANQFEKLRGKLGICLLED 1549


>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  363 bits (933), Expect(2) = e-123
 Identities = 199/505 (39%), Positives = 312/505 (61%), Gaps = 4/505 (0%)
 Frame = +1

Query: 1    SSTTKGHRCHNQITRKILETSHVKIKEVSIQETKSSIPDNVKINGSPQIIQSSVQPLAQE 180
            S+ ++ +R  N  TR ++E+ +V + +++    K  + ++V+ +      + +V   A+ 
Sbjct: 951  STNSRAYRVFNSRTRTVMESINVVVDDLT-PARKKDVEEDVRTS------EDNVADTAKS 1003

Query: 181  LKNAIIKGPENSVXXXXXXXXXXXXXTKKHEDKFGKLVYHNPK*-VLGNPSGGIKTISA- 354
             +NA     E S               +  +  F ++    PK  ++G+P+ G+ T S  
Sbjct: 1004 AENA-----EKS-----DSTTDEPNINQPDKSPFIRIQKMQPKELIIGDPNRGVTTRSRE 1053

Query: 355  --LRTEKCCVVIEEDIPHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTN 528
              + +  C V   E  P  V+ A  D+ W  AM EE+ Q  +   W+LV + E  N++  
Sbjct: 1054 IEIVSNSCFVSKIE--PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGT 1111

Query: 529  KWIFKNKRDENGKISRRKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIK 708
            KWIFKNK +E G I+R KARLVA+G+TQ+ G+D++ETF PVAR+++I++L+ V   LK K
Sbjct: 1112 KWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFK 1171

Query: 709  LYQMNVKEAFLNKDLREEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTF 888
            LYQM+VK AFLN  L EE Y+++P+GF      ++V RLKKA+Y LKQA +AW+E+L  F
Sbjct: 1172 LYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHLDHVYRLKKALYGLKQAPRAWYERLTEF 1231

Query: 889  LLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMY 1068
            L + G++K  +D TL+V +   +++I QIYVDDIVFG  ++E+   FV +M+  FEMS+ 
Sbjct: 1232 LTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVPQMQSEFEMSLV 1291

Query: 1069 QQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQV 1248
             +L +FLG+Q  Q +   F+SQ  Y KN+V+ FG++      TP  T + L K+E    V
Sbjct: 1292 GELHYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSV 1351

Query: 1249 DGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLF 1428
            D +LYRS+I SL+Y+TA+RPDI+FA+G+ +R+QA+P+ISH    KRIL+Y++ T++ G+ 
Sbjct: 1352 DQNLYRSMIGSLLYLTASRPDITFAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIM 1411

Query: 1429 YNSESIWELTGYIDSNWTGNTKDKK 1503
            Y   S   L GY D++W G+  D+K
Sbjct: 1412 YCHCSDSMLVGYCDADWAGSADDRK 1436



 Score =  107 bits (266), Expect(2) = e-123
 Identities = 57/141 (40%), Positives = 86/141 (60%), Gaps = 5/141 (3%)
 Frame = +2

Query: 1499 KSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVDLNY 1678
            K TSG  F +G   I+W S+KQ CV+LST++ EYIAA +S SQ+ W+K  L+   V+ + 
Sbjct: 1436 KCTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDV 1495

Query: 1679 PIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLREKG-----SKWNRSRLEQTKYILTK 1843
             + +  DN +A+N+ KNP+ H R+KH+DI++HY+R+       +  +    EQ   I TK
Sbjct: 1496 -MTLYCDNMSAINISKNPVQHNRTKHIDIRHHYIRDLVDDKIITLEHVDTEEQVADIFTK 1554

Query: 1844 EIDQTPFKYLRNKLGMIQFEE 1906
             +D   F+ LR KLG    E+
Sbjct: 1555 ALDANQFEKLRGKLGTCLLED 1575


>ref|XP_006577547.1| PREDICTED: uncharacterized protein LOC102662042 [Glycine max]
          Length = 1857

 Score =  360 bits (924), Expect(2) = e-119
 Identities = 176/388 (45%), Positives = 264/388 (68%)
 Frame = +1

Query: 340  KTISALRTEKCCVVIEEDIPHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNI 519
            +T + + +    V + +  P  V+ A  D+ W  AM EE+ Q  +   W+LV + +  N+
Sbjct: 1345 RTRTVMESINVVVFVSKTEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPKGTNV 1404

Query: 520  VTNKWIFKNKRDENGKISRRKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKL 699
            +  KWIFKNK +E G I+R KARLVA+G+TQ+ G+D++ETF PVAR+++I++L+ V   L
Sbjct: 1405 IGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACIL 1464

Query: 700  KIKLYQMNVKEAFLNKDLREEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKL 879
            K KLYQM+VK AFLN  L EEVY+++P+GF     P++V +LKKA+Y LKQA +AW+E+L
Sbjct: 1465 KFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYKLKKALYGLKQAPRAWYERL 1524

Query: 880  DTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEM 1059
              FL + G++K  +D TL V +   +++I QIYVDDIVFG  ++E+   FV++M+  FEM
Sbjct: 1525 TKFLTQQGYRKGGIDKTLLVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQFEFEM 1584

Query: 1060 SMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEE 1239
            S+  +L +FLG+Q  Q +   F+SQ  Y KN+V+ FG++      TP  T + L K+E  
Sbjct: 1585 SLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAG 1644

Query: 1240 DQVDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNL 1419
              VD SLYRS+I SL+Y+TA+RPDI+FA+G+ +R+QA+P+ISH    KRIL+Y++ T++ 
Sbjct: 1645 TSVDQSLYRSMIGSLLYLTASRPDITFAVGVCARYQANPKISHLNQVKRILKYVNGTSDY 1704

Query: 1420 GLFYNSESIWELTGYIDSNWTGNTKDKK 1503
            G+ Y   S   L GY D++W G+  D+K
Sbjct: 1705 GIMYCHCSDSMLVGYCDADWVGSADDRK 1732



 Score =  100 bits (248), Expect(2) = e-119
 Identities = 46/96 (47%), Positives = 69/96 (71%)
 Frame = +2

Query: 1499 KSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVDLNY 1678
            KSTSG  F +GN  I W S+KQ CV+LST++ EYIAA +S SQ+ W+K  L+   V+ + 
Sbjct: 1732 KSTSGGGFYLGNNLIAWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKEMLKEYNVEQDV 1791

Query: 1679 PIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLRE 1786
             + +  DN +A+N+ KNP+ H R+KH+DI++HY+R+
Sbjct: 1792 -MTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRD 1826


>gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase
            aspartic, catalytic [Medicago truncatula]
          Length = 1715

 Score =  358 bits (920), Expect(2) = e-117
 Identities = 200/518 (38%), Positives = 297/518 (57%), Gaps = 17/518 (3%)
 Frame = +1

Query: 1    SSTTKGHRCHNQITRKILETSHVKIKEVSIQETKSSIPDNVKINGSPQIIQSSVQPLAQE 180
            S  +K +R +N  T+ + E+ HVK  +       S   ++       +    S QP   E
Sbjct: 1059 SERSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSE 1118

Query: 181  LKNAIIKGPENSVXXXXXXXXXXXXXTKKHED----------------KFGKLVYHNPK* 312
                +   PE  +              K   +                KF     H  + 
Sbjct: 1119 KYTEVESCPEAEITPEAESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHPEEL 1178

Query: 313  VLGNPSGGIKTISALRTEKCCVVIEEDI-PHTVEAAFNDQEWRTAMNEEIMQMMKTNTWD 489
            ++G+     +T S  R E+  + +   I P TVE A +D  W  AM EE+ Q  + + WD
Sbjct: 1179 IIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWD 1238

Query: 490  LVLKTENMNIVTNKWIFKNKRDENGKISRRKARLVARGFTQVVGIDYEETFTPVARMKAI 669
            LV K    NI+  KW+F+NK +E G+++R KARLVA+G++Q  GIDY ETF PVAR++AI
Sbjct: 1239 LVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAI 1298

Query: 670  KILIAVVAKLKIKLYQMNVKEAFLNKDLREEVYMQKPEGFKIKEKPNYVCRLKKAIYSLK 849
            ++L++      I LYQM+VK AFLN  + EEVY+++P GF+  + P++V +LKK++Y LK
Sbjct: 1299 RLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLK 1358

Query: 850  QAFQAWHEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFGNSNDEVRGEF 1029
            QA +AW+++L  FL+K  F++  +DTTL+    +  ILI QIYVDDI+FG++N  +  EF
Sbjct: 1359 QAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEF 1418

Query: 1030 VKKMEESFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIISTPMAT 1209
             K M++ FEMSM  +LK FLGIQ  QS  G +V Q  Y K +++ F ++  K+++TPM  
Sbjct: 1419 SKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHP 1478

Query: 1210 RMILEKNEEEDQVDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRI 1389
               L K +    VD  LYR +I SL+Y+TA+RPDI F++ L +RFQ+DPR SH    KRI
Sbjct: 1479 TCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRI 1538

Query: 1390 LRYLHETTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 1503
             RYL  TTNLGL Y     ++L G+ D+++ G+  ++K
Sbjct: 1539 FRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERK 1576



 Score = 93.2 bits (230), Expect(2) = e-117
 Identities = 50/139 (35%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
 Frame = +2

Query: 1490 LKTKSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVD 1669
            ++ KSTSG    +G   I+W S++Q  +A+ST++ EYI+AA+  +Q+ W+K+ LE   ++
Sbjct: 1573 IERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQIN 1632

Query: 1670 LNYPIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLREKGSKWNR-----SRLEQTKYI 1834
             N  IPI  DN   + + KNPILH R+KH++IK+H++R+   K            Q   I
Sbjct: 1633 AN-SIPIYCDNTAVICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADI 1691

Query: 1835 LTKEIDQTPFKYLRNKLGM 1891
             TK +    F +++  L M
Sbjct: 1692 FTKPLSVERFDFIKKNLNM 1710


>gb|AAP53706.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1419

 Score =  348 bits (892), Expect(2) = e-117
 Identities = 175/369 (47%), Positives = 250/369 (67%)
 Frame = +1

Query: 397  PHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNKWIFKNKRDENGKISR 576
            P  V  A  D+ W  AM+EE+    +   W LV      N++  KW+FKNK++E+G I R
Sbjct: 910  PKDVSHALTDESWINAMHEELENFERNKVWTLVEPPSGHNVIGTKWVFKNKQNEDGLIVR 969

Query: 577  RKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKLYQMNVKEAFLNKDLR 756
             KARLVA+GFTQV G+D++ETF PVAR++AI++L+A  A    KLYQM+VK AFLN  ++
Sbjct: 970  NKARLVAQGFTQVEGLDFDETFAPVARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQ 1029

Query: 757  EEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFLLKYGFQKSTLDTTLY 936
            EEVY+++P GF+  + PN+V +L KA+Y LKQA +AW+++L  FLL  GF    +D TL+
Sbjct: 1030 EEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRLKNFLLAKGFTMGKVDKTLF 1089

Query: 937  VLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQQLKHFLGIQTVQSDL 1116
            VL+  ++ L  QIYVDDI+FG S   V  +F + M   FEMSM  +L +FLG+Q  Q+  
Sbjct: 1090 VLKHGDNQLFVQIYVDDIIFGCSTHAVVVDFAETMRREFEMSMMGELSYFLGLQIKQTPQ 1149

Query: 1117 GTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVDGSLYRSIIDSLMYVT 1296
            GTFV Q  Y K+++R F ++  K ISTP+ +  +L+ +E+ + VD   YRS+I SL+Y+T
Sbjct: 1150 GTFVHQTKYTKDLLRRFKMENCKPISTPIGSTAVLDPDEDGEAVDQKEYRSMIGSLLYLT 1209

Query: 1297 ATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFYNSESIWELTGYIDSN 1476
            A+RPDI FA+ L +RFQA PR SH Q  KRI+RYL+ T   G++Y++ S   L+GY D++
Sbjct: 1210 ASRPDIQFAVCLCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSGYSDAD 1269

Query: 1477 WTGNTKDKK 1503
            + G   D+K
Sbjct: 1270 FGGCRIDRK 1278



 Score =  103 bits (258), Expect(2) = e-117
 Identities = 58/145 (40%), Positives = 90/145 (62%), Gaps = 6/145 (4%)
 Frame = +2

Query: 1478 GQAILKTKSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLES 1657
            G   +  KSTSG    +G + I W+SRKQ  VA ST++ EY+AAA+  SQ+ W+ + L+ 
Sbjct: 1271 GGCRIDRKSTSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKD 1330

Query: 1658 ICVDLNYPIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLR---EKGS---KWNRSRLE 1819
              +     +P+  DN +A+N+ KNP+ H R+KH+DI++H+LR   EKG    ++  ++L 
Sbjct: 1331 YGITFE-KVPLFCDNTSAINIAKNPVQHSRTKHIDIRFHFLRDHVEKGDVELQFLDTKL- 1388

Query: 1820 QTKYILTKEIDQTPFKYLRNKLGMI 1894
            Q   I TK +D   F +LR +LG+I
Sbjct: 1389 QIADIFTKPLDSNRFAFLRGELGVI 1413


>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
          Length = 1892

 Score =  347 bits (889), Expect(2) = e-114
 Identities = 172/369 (46%), Positives = 245/369 (66%)
 Frame = +1

Query: 397  PHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNKWIFKNKRDENGKISR 576
            PH VE A  D +W  AM EE+    +   W LV +  N N+V  KW+F+NK+DE+G ++R
Sbjct: 1383 PHRVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTR 1441

Query: 577  RKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKLYQMNVKEAFLNKDLR 756
             KARLVA+G++QV G+D++ET+ PVAR+++I+IL+A       KLYQM+VK AFLN  ++
Sbjct: 1442 NKARLVAKGYSQVEGLDFDETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIK 1501

Query: 757  EEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFLLKYGFQKSTLDTTLY 936
            EEVY+++P GF+  E PN+V RL KA+Y LKQA +AW+E L  FL+  GF+    D TL+
Sbjct: 1502 EEVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLF 1561

Query: 937  VLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQQLKHFLGIQTVQSDL 1116
                EN + +CQIYVDDI+FG++N+    EF + M + FEMSM  +LK+FLG Q  Q   
Sbjct: 1562 TKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLRE 1621

Query: 1117 GTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVDGSLYRSIIDSLMYVT 1296
            GTF+SQ  Y ++++  FG+   K I TPM T   L+ +     VD  +YRS+I SL+Y+ 
Sbjct: 1622 GTFISQTKYTQDILAKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLC 1681

Query: 1297 ATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFYNSESIWELTGYIDSN 1476
            A+RPDI  ++ + +RFQ+DP+ SH    KRILRYL  T   GL+Y   S ++L GY D++
Sbjct: 1682 ASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDAD 1741

Query: 1477 WTGNTKDKK 1503
            W G   ++K
Sbjct: 1742 WAGCKINRK 1750



 Score = 95.1 bits (235), Expect(2) = e-114
 Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
 Frame = +2

Query: 1490 LKTKSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVD 1669
            +  KSTSG    +G + ++W S+KQ  VALST++ EYIAA +  +Q+ W++  L      
Sbjct: 1747 INRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYK 1806

Query: 1670 LNYPIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLREKGSKWN-----RSRLEQTKYI 1834
            L   +P+  DN +A+ M  NP+ H R+KH+ I+YH+LR+   K +      +  +Q   I
Sbjct: 1807 LT-KVPLLCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADI 1865

Query: 1835 LTKEIDQTPFKYLRNKLGMI 1894
             TK +D+  F  LR++L ++
Sbjct: 1866 FTKPLDEQSFTRLRHELNIL 1885


>gb|ABE88110.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
            [Medicago truncatula]
          Length = 1654

 Score =  347 bits (891), Expect(2) = e-114
 Identities = 201/521 (38%), Positives = 299/521 (57%), Gaps = 20/521 (3%)
 Frame = +1

Query: 1    SSTTKGHRCHNQITRKILETSHVKIKEVSIQETKSSIPDNVKINGSP---QIIQSSVQPL 171
            S  +K +R +N  T  + E+ HVK  +   +E  S  P+  + N      +    S QP 
Sbjct: 998  SERSKAYRVYNSETHCVEESMHVKFDD---REPGSKTPEQSESNAGTTDSEDASESDQPS 1054

Query: 172  AQELKNAIIKGPE---------NS-------VXXXXXXXXXXXXXTKKHEDKFGKLVYHN 303
              E    +   PE         NS       V              +  + KF     H 
Sbjct: 1055 NSEKYTEVESYPEAEITPEVESNSEAEPSPIVQNESASEDFQDNTQQVIQPKFKHKSSHP 1114

Query: 304  PK*VLGNPSGGIKTISALRTEKCCVVIEEDI-PHTVEAAFNDQEWRTAMNEEIMQMMKTN 480
             + ++G+     +T S  R E+  + +   I P TVE A +D  W  +M EE+ Q  + +
Sbjct: 1115 EELIIGSKDSPRRTRSHFRQEETLIGLLSIIEPKTVEEALSDDGWILSMQEELNQFQRND 1174

Query: 481  TWDLVLKTENMNIVTNKWIFKNKRDENGKISRRKARLVARGFTQVVGIDYEETFTPVARM 660
             WDLV K    NI+  KW+F+NK++E G+++R KARLVA+G++Q  GIDY ETF PVAR+
Sbjct: 1175 VWDLVPKPFQKNIIGTKWVFRNKQNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARL 1234

Query: 661  KAIKILIAVVAKLKIKLYQMNVKEAFLNKDLREEVYMQKPEGFKIKEKPNYVCRLKKAIY 840
            +AI++L++      I LYQM+VK A LN  + EEVY+++P GF+  + P++V +LKK++Y
Sbjct: 1235 EAIRLLLSYAINHGIILYQMDVKSALLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLY 1294

Query: 841  SLKQAFQAWHEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFGNSNDEVR 1020
             LKQA +AW+++L  FL+K  F++  +DTTL+    +  ILI QIYVDDI+FG++N  + 
Sbjct: 1295 GLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLC 1354

Query: 1021 GEFVKKMEESFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIISTP 1200
             EF K M++ FEMSM  +LK FL IQ  QS  G +V Q  Y K +++ F ++  K++ TP
Sbjct: 1355 KEFSKLMQDEFEMSMMGELKFFLVIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMYTP 1414

Query: 1201 MATRMILEKNEEEDQVDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVA 1380
            M     L K +    VD  LYR +I SL+Y+TA+RPDI F++ L +RFQ+DPR SH    
Sbjct: 1415 MHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAV 1474

Query: 1381 KRILRYLHETTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 1503
            K I RYL  TTNLGL Y     ++L G+ D+++ G+  ++K
Sbjct: 1475 KIIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERK 1515



 Score = 94.4 bits (233), Expect(2) = e-114
 Identities = 51/139 (36%), Positives = 82/139 (58%), Gaps = 5/139 (3%)
 Frame = +2

Query: 1490 LKTKSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVD 1669
            ++ KSTSG    +G   I+W S++Q  +A+ST++ EYI+AA+  +Q+ W+K+ LE   ++
Sbjct: 1512 IERKSTSGNCQFLGENLISWASKRQVTIAMSTAEAEYISAASCCTQLLWMKHQLEDYQIN 1571

Query: 1670 LNYPIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLREKGSKWNR-----SRLEQTKYI 1834
             N  IPI  DN  A+ + KNPILH R+KH++IK+H++R+   K            Q   I
Sbjct: 1572 AN-SIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDLQFIDTEHQWADI 1630

Query: 1835 LTKEIDQTPFKYLRNKLGM 1891
             TK +    F +++  L M
Sbjct: 1631 FTKPLSVERFDFIKKNLNM 1649


>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
          Length = 2319

 Score =  349 bits (896), Expect(2) = e-114
 Identities = 175/369 (47%), Positives = 249/369 (67%)
 Frame = +1

Query: 397  PHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNKWIFKNKRDENGKISR 576
            P  VE A +D +W TAM EE+    +   W LV + +  N++  KW+F+NK+DENG +++
Sbjct: 1314 PLKVEEALDDPDWITAMQEELNNFTRNEVWSLVQRPKQ-NVIGTKWVFRNKQDENGVVTK 1372

Query: 577  RKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKLYQMNVKEAFLNKDLR 756
             KARLVA+G+TQV G+D+ ET+ PVAR+++I+ILIA       KLYQM+VK AFLN  L+
Sbjct: 1373 NKARLVAQGYTQVEGLDFGETYAPVARLESIRILIAYATNHDFKLYQMDVKSAFLNGPLQ 1432

Query: 757  EEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFLLKYGFQKSTLDTTLY 936
            E VY+++P GF+  +KPN+V  L KA+Y LKQA +AW++ L  FL+K GF     D+TL+
Sbjct: 1433 ERVYVEQPPGFEDPKKPNHVYLLHKALYGLKQAPRAWYDCLKDFLIKNGFTIGKADSTLF 1492

Query: 937  VLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQQLKHFLGIQTVQSDL 1116
              + +N + +CQIYVDDI+FG++N++   EF K M   FEMSM  +LK+FLG Q  Q   
Sbjct: 1493 TRKVDNELFVCQIYVDDIIFGSTNEKFCEEFSKVMTNRFEMSMMGELKYFLGFQVKQLKE 1552

Query: 1117 GTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVDGSLYRSIIDSLMYVT 1296
            GTF+ Q  Y ++M++ FG++  K   TPM +   L+ NEE   VD  LYRS+I SL+Y+ 
Sbjct: 1553 GTFLCQTKYTQDMLKKFGMEKAKHAKTPMPSNGHLDLNEEGKPVDQKLYRSMIGSLLYLC 1612

Query: 1297 ATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFYNSESIWELTGYIDSN 1476
            A+RPDI  ++ + +RFQA+P+  H    KRILRYL  T NLGL+Y   S ++L GY DS+
Sbjct: 1613 ASRPDIMLSVCMCARFQANPKDCHLVAVKRILRYLVHTQNLGLWYPKGSFFDLLGYSDSD 1672

Query: 1477 WTGNTKDKK 1503
            + G   D+K
Sbjct: 1673 YAGCKVDRK 1681



 Score = 91.7 bits (226), Expect(2) = e-114
 Identities = 42/100 (42%), Positives = 66/100 (66%)
 Frame = +2

Query: 1499 KSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVDLNY 1678
            KST+G    +G + ++W+S+KQ CVALST++ EYIAA    +Q+ W+K  L     + N 
Sbjct: 1681 KSTTGTCQFLGRSLVSWSSKKQNCVALSTAEAEYIAAGACCAQLLWMKQTLRDFGCEFN- 1739

Query: 1679 PIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLREKGSK 1798
             IP+  DN +A+ +  NP+ H R+KH+DI+ H+LR+  +K
Sbjct: 1740 KIPLLCDNESAIKLANNPVQHSRTKHIDIRRHFLRDHEAK 1779


>gb|ABF67921.1| Ji1 putative pol protein [Zea mays]
          Length = 1063

 Score =  346 bits (887), Expect(2) = e-114
 Identities = 172/369 (46%), Positives = 244/369 (66%)
 Frame = +1

Query: 397  PHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNKWIFKNKRDENGKISR 576
            PH VE A  D +W  AM EE+    +   W LV +  N N+V  KW+F+NK+DE+G ++R
Sbjct: 554  PHRVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTR 612

Query: 577  RKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKLYQMNVKEAFLNKDLR 756
             KARLVA+G++QV G+D+ ET+ PVAR+++I+IL+A       KLYQM+VK AFLN  ++
Sbjct: 613  NKARLVAKGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIK 672

Query: 757  EEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFLLKYGFQKSTLDTTLY 936
            EEVY+++P GF+  E PN+V RL KA+Y LKQA +AW+E L  FL+  GF+    D TL+
Sbjct: 673  EEVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLF 732

Query: 937  VLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQQLKHFLGIQTVQSDL 1116
                EN + +CQIYVDDI+FG++N+    EF + M + FEMSM  +LK+FLG Q  Q   
Sbjct: 733  TKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQE 792

Query: 1117 GTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVDGSLYRSIIDSLMYVT 1296
            GTF+SQ  Y ++++  FG+   K I TPM T   L+ +     VD  +YRS+I SL+Y+ 
Sbjct: 793  GTFISQTKYTQDILAKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLC 852

Query: 1297 ATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFYNSESIWELTGYIDSN 1476
            A+RPDI  ++ + +RFQ+DP+ SH    KRILRYL  T   GL+Y   S ++L GY D++
Sbjct: 853  ASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDAD 912

Query: 1477 WTGNTKDKK 1503
            W G   ++K
Sbjct: 913  WAGCKINRK 921



 Score = 95.1 bits (235), Expect(2) = e-114
 Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
 Frame = +2

Query: 1490 LKTKSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVD 1669
            +  KSTSG    +G + ++W S+KQ  VALST++ EYIAA +  +Q+ W++  L      
Sbjct: 918  INRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYK 977

Query: 1670 LNYPIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLREKGSKWN-----RSRLEQTKYI 1834
            L   +P+  DN +A+ M  NP+ H R+KH+ I+YH+LR+   K +      +  +Q   I
Sbjct: 978  LT-KVPLLCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADI 1036

Query: 1835 LTKEIDQTPFKYLRNKLGMI 1894
             TK +D+  F  LR++L ++
Sbjct: 1037 FTKPLDEQSFTRLRHELNIL 1056


>gb|AAO37957.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108712101|gb|ABF99896.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1969

 Score =  333 bits (855), Expect(2) = e-114
 Identities = 171/369 (46%), Positives = 240/369 (65%)
 Frame = +1

Query: 397  PHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNKWIFKNKRDENGKISR 576
            P  V  A +D+ W  AM+EE+    +   W LV      N++  KW+FKNK  E+G I R
Sbjct: 1286 PKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIVR 1345

Query: 577  RKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKLYQMNVKEAFLNKDLR 756
             KARLVA+GFTQV G+D+EETF PVAR++AI+IL+A  A    KL+QM+VK AFLN  + 
Sbjct: 1346 NKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIE 1405

Query: 757  EEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFLLKYGFQKSTLDTTLY 936
            EEVY+++P GF+  + PN+V +L+KA+Y LKQA +AW+E+L TFLL+ GF+   +D TL+
Sbjct: 1406 EEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTLF 1465

Query: 937  VLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQQLKHFLGIQTVQSDL 1116
             L      L+ QIYVDDI+FG S+  +  +F   M   FEMSM  +L  FLG+Q  Q+  
Sbjct: 1466 TLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKE 1525

Query: 1117 GTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVDGSLYRSIIDSLMYVT 1296
            G FV Q  Y K +++ F +   K I+TPMAT   L  +E+ ++VD   YRS+I SL+Y+T
Sbjct: 1526 GIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLT 1585

Query: 1297 ATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFYNSESIWELTGYIDSN 1476
            A+RPDI F++ L +RFQA PR SH Q  KRI RY+  T   G++Y+  S   +  + D++
Sbjct: 1586 ASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRAFSDAD 1645

Query: 1477 WTGNTKDKK 1503
            + G   D+K
Sbjct: 1646 FAGCKIDRK 1654



 Score =  107 bits (266), Expect(2) = e-114
 Identities = 57/138 (41%), Positives = 95/138 (68%), Gaps = 6/138 (4%)
 Frame = +2

Query: 1499 KSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVDLNY 1678
            KSTSG    +G + ++W+SRKQ  VA ST++ EY+AAA++ SQV W+ + L+   +  + 
Sbjct: 1654 KSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFS- 1712

Query: 1679 PIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLR---EKGS---KWNRSRLEQTKYILT 1840
             +P+  DN +A+N+ KNP+ H R+KH++I+YH+LR   EKG+   ++  S  +Q   I T
Sbjct: 1713 GVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESE-KQLADIFT 1771

Query: 1841 KEIDQTPFKYLRNKLGMI 1894
            K +D++ F++LR++LG+I
Sbjct: 1772 KPLDRSRFEFLRSELGVI 1789


>emb|CCI55376.1| PH01B035L11.21 [Phyllostachys edulis]
          Length = 2029

 Score =  340 bits (871), Expect(2) = e-113
 Identities = 170/369 (46%), Positives = 246/369 (66%)
 Frame = +1

Query: 397  PHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNKWIFKNKRDENGKISR 576
            P  V  A +D+ W  AM+EE+    +   W LV      NI+  KW+FKNK+ E+G I R
Sbjct: 1472 PKDVCHALSDESWVNAMHEELENFERNKVWSLVEPPRGHNIIGTKWVFKNKQSEDGVIIR 1531

Query: 577  RKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKLYQMNVKEAFLNKDLR 756
             KARLVA+GF+QV G+D+EETF PVAR++AI+IL+A  A    KLYQM+VK AFLN  + 
Sbjct: 1532 NKARLVAQGFSQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLYQMDVKSAFLNGLIE 1591

Query: 757  EEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFLLKYGFQKSTLDTTLY 936
            EEVY+++P GF+  + PN+V +L KA+Y LKQA +AW+E+L ++LL +GF+   +D TL+
Sbjct: 1592 EEVYVRQPPGFENPKYPNHVFKLSKALYGLKQAPRAWYERLKSYLLSHGFEMGKVDKTLF 1651

Query: 937  VLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQQLKHFLGIQTVQSDL 1116
            + R  +  L+ QIYVDDI+FG S+  +  +F   M   FEMSM  +L  FLG Q  Q+  
Sbjct: 1652 IRRHGSDFLLVQIYVDDIIFGGSSHTLVSQFSDVMSSEFEMSMMGELSFFLGFQIKQTRE 1711

Query: 1117 GTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVDGSLYRSIIDSLMYVT 1296
            GTF+ Q  Y +++++ F +   K +STPMA+   L+ +E+ + VD   +RS+I SL+Y+T
Sbjct: 1712 GTFLHQGKYTRDLLKRFDMSDGKPVSTPMASTAYLDPDEDGEPVDQKEFRSMIGSLLYLT 1771

Query: 1297 ATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFYNSESIWELTGYIDSN 1476
            A+RPDI F++ L +RFQA PR+SH Q  KRI RYL  T + G++Y+S S   L  + D++
Sbjct: 1772 ASRPDIHFSVCLCARFQASPRVSHRQAVKRIFRYLRATIDYGIWYSSSSCLSLRAFSDAD 1831

Query: 1477 WTGNTKDKK 1503
            + G   D+K
Sbjct: 1832 FAGCRIDRK 1840



 Score =  100 bits (249), Expect(2) = e-113
 Identities = 53/137 (38%), Positives = 85/137 (62%), Gaps = 5/137 (3%)
 Frame = +2

Query: 1499 KSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVDLNY 1678
            KSTSG    +G + ++W+SRKQ  VA ST++ EY+AAA+  SQV W+ + L    + ++ 
Sbjct: 1840 KSTSGTCQFLGTSLVSWSSRKQSGVAQSTAEAEYVAAASCCSQVLWMTSTLRDFGLVID- 1898

Query: 1679 PIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLREKGSKWN-----RSRLEQTKYILTK 1843
             +P+  DN +A+N+ KNP+ H R+KH+DI++H+LR+   K +          Q   I TK
Sbjct: 1899 SVPLFCDNTSAINIAKNPVQHSRTKHIDIRFHFLRDHVEKGDIVLQFVESDHQLADIFTK 1958

Query: 1844 EIDQTPFKYLRNKLGMI 1894
             +D + F  LR +LG++
Sbjct: 1959 PLDSSRFSALRGELGVV 1975


>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
          Length = 1760

 Score =  345 bits (884), Expect(2) = e-113
 Identities = 171/369 (46%), Positives = 244/369 (66%)
 Frame = +1

Query: 397  PHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNKWIFKNKRDENGKISR 576
            PH VE A  D +W  AM EE+    +   W LV +  N N+V  KW+F+NK+DE+G ++R
Sbjct: 1251 PHRVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTR 1309

Query: 577  RKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKLYQMNVKEAFLNKDLR 756
             KARLVA+G++QV G+D+ ET+ PVAR+++I+IL+A       KLYQM+VK AFLN  ++
Sbjct: 1310 NKARLVAKGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIK 1369

Query: 757  EEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFLLKYGFQKSTLDTTLY 936
            EEVY+++P GF+  E PN+V +L KA+Y LKQA +AW+E L  FL+  GF+    D TL+
Sbjct: 1370 EEVYVEQPPGFEDSEYPNHVYKLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLF 1429

Query: 937  VLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQQLKHFLGIQTVQSDL 1116
                EN + +CQIYVDDI+FG++N+    EF + M + FEMSM  +LK+FLG Q  Q   
Sbjct: 1430 TKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQE 1489

Query: 1117 GTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVDGSLYRSIIDSLMYVT 1296
            GTF+SQ  Y ++++  FG+   K I TPM T   L+ +     VD  +YRS+I SL+Y+ 
Sbjct: 1490 GTFISQTKYTQDILSKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLC 1549

Query: 1297 ATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFYNSESIWELTGYIDSN 1476
            A+RPDI  ++ + +RFQ+DP+ SH    KRILRYL  T   GL+Y   S ++L GY D++
Sbjct: 1550 ASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLLGYSDAD 1609

Query: 1477 WTGNTKDKK 1503
            W G   ++K
Sbjct: 1610 WAGCKINRK 1618



 Score = 95.1 bits (235), Expect(2) = e-113
 Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
 Frame = +2

Query: 1490 LKTKSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVD 1669
            +  KSTSG    +G + ++W S+KQ  VALST++ EYIAA +  +Q+ W++  L      
Sbjct: 1615 INRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYK 1674

Query: 1670 LNYPIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLREKGSKWN-----RSRLEQTKYI 1834
            L   +P+  DN +A+ M  NP+ H R+KH+ I+YH+LR+   K +      +  +Q   I
Sbjct: 1675 LT-KVPLLCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADI 1733

Query: 1835 LTKEIDQTPFKYLRNKLGMI 1894
             TK +D+  F  LR++L ++
Sbjct: 1734 FTKPLDEQTFTKLRHELNIL 1753


>gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77552672|gb|ABA95469.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 709

 Score =  341 bits (874), Expect(2) = e-113
 Identities = 184/409 (44%), Positives = 261/409 (63%), Gaps = 7/409 (1%)
 Frame = +1

Query: 298  HNPK*VLGNPSGGIKTISALRTEKCCV-------VIEEDIPHTVEAAFNDQEWRTAMNEE 456
            H P+ ++GN  G   T S + T   C           +D+ H    A  D+ W  AM+EE
Sbjct: 165  HPPEQIIGN-IGERTTRSKVTTHDVCANSAFVASFESKDVSH----ALTDESWINAMHEE 219

Query: 457  IMQMMKTNTWDLVLKTENMNIVTNKWIFKNKRDENGKISRRKARLVARGFTQVVGIDYEE 636
            +    +   W LV      NI+  KW+FKNK++E+G I R KARLVA+GFTQV G+D++E
Sbjct: 220  LENFERNKVWTLVETKFGHNIIGTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDE 279

Query: 637  TFTPVARMKAIKILIAVVAKLKIKLYQMNVKEAFLNKDLREEVYMQKPEGFKIKEKPNYV 816
            TF PVAR++AI+ L+A  A    KLYQM+VK AFLN  ++EEVY+++P GF+  + PN+V
Sbjct: 280  TFAPVARIEAIRHLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYIKQPPGFENPDFPNHV 339

Query: 817  CRLKKAIYSLKQAFQAWHEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVF 996
             +L KA Y LKQA +AW+++L  FLL  GF     D TL+VL+  ++ L  QIYVDDI+F
Sbjct: 340  FKLSKAFYGLKQAPRAWYDRLKNFLLAKGFTMGKFDKTLFVLKHGDNQLFVQIYVDDIIF 399

Query: 997  GNSNDEVRGEFVKKMEESFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGID 1176
            G S   +  +F + M   FEMSM  +L +FLG+Q  Q+  GTFV Q  Y K+++R F ++
Sbjct: 400  GCSIHALVVDFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKME 459

Query: 1177 GVKIISTPMATRMILEKNEEEDQVDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADP 1356
              K ISTP+ +  +L+ +E+   VD   YRS+I SL+Y+TA+RPDI FA+ L +RFQA P
Sbjct: 460  NCKPISTPIGSTAVLDPDEDGKAVDQKEYRSMIGSLLYLTASRPDIQFAVCLRARFQASP 519

Query: 1357 RISHFQVAKRILRYLHETTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 1503
            R SH Q  KRI+RYL+ T   G++Y++ S   L+GY D+++ G   D+K
Sbjct: 520  RASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSGYSDADFGGCRIDRK 568



 Score = 99.0 bits (245), Expect(2) = e-113
 Identities = 57/145 (39%), Positives = 88/145 (60%), Gaps = 6/145 (4%)
 Frame = +2

Query: 1478 GQAILKTKSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLES 1657
            G   +  KSTSG    +G + I W+SRKQ  VA ST++ EY+AAA+  SQ+ W+ + L+ 
Sbjct: 561  GGCRIDRKSTSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKD 620

Query: 1658 ICVDLNYPIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLR---EKGS---KWNRSRLE 1819
              +     + +  DN +A+N+ KNP+ H R+KH+DI++H+LR   EKG    ++  + L 
Sbjct: 621  YGLTFE-KVHLFCDNTSAINIAKNPVQHSRTKHIDIRFHFLRDHVEKGDVELQFLDTNL- 678

Query: 1820 QTKYILTKEIDQTPFKYLRNKLGMI 1894
            Q   I TK +D   F +LR +LG+I
Sbjct: 679  QIADIFTKPLDSNRFAFLRGELGII 703


>emb|CAE03600.2| OSJNBb0004A17.2 [Oryza sativa Japonica Group]
          Length = 2256

 Score =  332 bits (852), Expect(2) = e-113
 Identities = 170/369 (46%), Positives = 240/369 (65%)
 Frame = +1

Query: 397  PHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNKWIFKNKRDENGKISR 576
            P  V  A +D+ W  AM+EE+    +   W LV      N++  KW+FKNK  E+G I R
Sbjct: 1265 PKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIVR 1324

Query: 577  RKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKLYQMNVKEAFLNKDLR 756
             KARLVA+GFTQV G+D+EETF PVAR++AI+IL+A  A    KL+QM+VK AFLN  + 
Sbjct: 1325 NKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIE 1384

Query: 757  EEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFLLKYGFQKSTLDTTLY 936
            EEVY+++P GF+  + PN+V +L+KA+Y LKQA +AW+E+L TFLL+ GF+   +D TL+
Sbjct: 1385 EEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTLF 1444

Query: 937  VLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQQLKHFLGIQTVQSDL 1116
             L      L+ QIYVDDI+FG S+  +  +F   M   FEMSM  +L  FLG+Q  Q+  
Sbjct: 1445 TLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKE 1504

Query: 1117 GTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVDGSLYRSIIDSLMYVT 1296
            G FV Q  Y K +++ F +   K I+TPMAT   L  +E+ ++VD   YRS+I SL+Y+T
Sbjct: 1505 GIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLT 1564

Query: 1297 ATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFYNSESIWELTGYIDSN 1476
            A+RPDI F++ L +RFQA PR SH Q  KR+ RY+  T   G++Y+  S   +  + D++
Sbjct: 1565 ASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRAFSDAD 1624

Query: 1477 WTGNTKDKK 1503
            + G   D+K
Sbjct: 1625 FAGCKIDRK 1633



 Score =  107 bits (266), Expect(2) = e-113
 Identities = 57/138 (41%), Positives = 95/138 (68%), Gaps = 6/138 (4%)
 Frame = +2

Query: 1499 KSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVDLNY 1678
            KSTSG    +G + ++W+SRKQ  VA ST++ EY+AAA++ SQV W+ + L+   +  + 
Sbjct: 1633 KSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFS- 1691

Query: 1679 PIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLR---EKGS---KWNRSRLEQTKYILT 1840
             +P+  DN +A+N+ KNP+ H R+KH++I+YH+LR   EKG+   ++  S  +Q   I T
Sbjct: 1692 GVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESE-KQLADIFT 1750

Query: 1841 KEIDQTPFKYLRNKLGMI 1894
            K +D++ F++LR++LG+I
Sbjct: 1751 KPLDRSRFEFLRSELGVI 1768


>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa Japonica
            Group]
          Length = 2145

 Score =  332 bits (852), Expect(2) = e-113
 Identities = 170/369 (46%), Positives = 240/369 (65%)
 Frame = +1

Query: 397  PHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNKWIFKNKRDENGKISR 576
            P  V  A +D+ W  AM+EE+    +   W LV      N++  KW+FKNK  E+G I R
Sbjct: 1286 PKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIVR 1345

Query: 577  RKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKLYQMNVKEAFLNKDLR 756
             KARLVA+GFTQV G+D+EETF PVAR++AI+IL+A  A    KL+QM+VK AFLN  + 
Sbjct: 1346 NKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIE 1405

Query: 757  EEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFLLKYGFQKSTLDTTLY 936
            EEVY+++P GF+  + PN+V +L+KA+Y LKQA +AW+E+L TFLL+ GF+   +D TL+
Sbjct: 1406 EEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTLF 1465

Query: 937  VLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQQLKHFLGIQTVQSDL 1116
             L      L+ QIYVDDI+FG S+  +  +F   M   FEMSM  +L  FLG+Q  Q+  
Sbjct: 1466 TLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKE 1525

Query: 1117 GTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVDGSLYRSIIDSLMYVT 1296
            G FV Q  Y K +++ F +   K I+TPMAT   L  +E+ ++VD   YRS+I SL+Y+T
Sbjct: 1526 GIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLT 1585

Query: 1297 ATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFYNSESIWELTGYIDSN 1476
            A+RPDI F++ L +RFQA PR SH Q  KR+ RY+  T   G++Y+  S   +  + D++
Sbjct: 1586 ASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRAFSDAD 1645

Query: 1477 WTGNTKDKK 1503
            + G   D+K
Sbjct: 1646 FAGCKIDRK 1654



 Score =  107 bits (266), Expect(2) = e-113
 Identities = 57/138 (41%), Positives = 95/138 (68%), Gaps = 6/138 (4%)
 Frame = +2

Query: 1499 KSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVDLNY 1678
            KSTSG    +G + ++W+SRKQ  VA ST++ EY+AAA++ SQV W+ + L+   +  + 
Sbjct: 1654 KSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFS- 1712

Query: 1679 PIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLR---EKGS---KWNRSRLEQTKYILT 1840
             +P+  DN +A+N+ KNP+ H R+KH++I+YH+LR   EKG+   ++  S  +Q   I T
Sbjct: 1713 GVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESE-KQLADIFT 1771

Query: 1841 KEIDQTPFKYLRNKLGMI 1894
            K +D++ F++LR++LG+I
Sbjct: 1772 KPLDRSRFEFLRSELGVI 1789


>gb|ABF93543.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 2124

 Score =  332 bits (852), Expect(2) = e-113
 Identities = 170/369 (46%), Positives = 240/369 (65%)
 Frame = +1

Query: 397  PHTVEAAFNDQEWRTAMNEEIMQMMKTNTWDLVLKTENMNIVTNKWIFKNKRDENGKISR 576
            P  V  A +D+ W  AM+EE+    +   W LV      N++  KW+FKNK  E+G I R
Sbjct: 1265 PKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIVR 1324

Query: 577  RKARLVARGFTQVVGIDYEETFTPVARMKAIKILIAVVAKLKIKLYQMNVKEAFLNKDLR 756
             KARLVA+GFTQV G+D+EETF PVAR++AI+IL+A  A    KL+QM+VK AFLN  + 
Sbjct: 1325 NKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIE 1384

Query: 757  EEVYMQKPEGFKIKEKPNYVCRLKKAIYSLKQAFQAWHEKLDTFLLKYGFQKSTLDTTLY 936
            EEVY+++P GF+  + PN+V +L+KA+Y LKQA +AW+E+L TFLL+ GF+   +D TL+
Sbjct: 1385 EEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTLF 1444

Query: 937  VLRRENSILICQIYVDDIVFGNSNDEVRGEFVKKMEESFEMSMYQQLKHFLGIQTVQSDL 1116
             L      L+ QIYVDDI+FG S+  +  +F   M   FEMSM  +L  FLG+Q  Q+  
Sbjct: 1445 TLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKE 1504

Query: 1117 GTFVSQRLYVKNMVR*FGIDGVKIISTPMATRMILEKNEEEDQVDGSLYRSIIDSLMYVT 1296
            G FV Q  Y K +++ F +   K I+TPMAT   L  +E+ ++VD   YRS+I SL+Y+T
Sbjct: 1505 GIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLT 1564

Query: 1297 ATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLHETTNLGLFYNSESIWELTGYIDSN 1476
            A+RPDI F++ L +RFQA PR SH Q  KR+ RY+  T   G++Y+  S   +  + D++
Sbjct: 1565 ASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRAFSDAD 1624

Query: 1477 WTGNTKDKK 1503
            + G   D+K
Sbjct: 1625 FAGCKIDRK 1633



 Score =  107 bits (266), Expect(2) = e-113
 Identities = 57/138 (41%), Positives = 95/138 (68%), Gaps = 6/138 (4%)
 Frame = +2

Query: 1499 KSTSGYYFMMGNTPITWTSRKQECVALSTSKVEYIAAANSASQVTWIKNWLESICVDLNY 1678
            KSTSG    +G + ++W+SRKQ  VA ST++ EY+AAA++ SQV W+ + L+   +  + 
Sbjct: 1633 KSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFS- 1691

Query: 1679 PIPIKVDN*NAVNMKKNPILHRRSKHVDIKYHYLR---EKGS---KWNRSRLEQTKYILT 1840
             +P+  DN +A+N+ KNP+ H R+KH++I+YH+LR   EKG+   ++  S  +Q   I T
Sbjct: 1692 GVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESE-KQLADIFT 1750

Query: 1841 KEIDQTPFKYLRNKLGMI 1894
            K +D++ F++LR++LG+I
Sbjct: 1751 KPLDRSRFEFLRSELGVI 1768