BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00023594
         (639 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR16859.1| unknown [Picea sitchensis]                              99   1e-18
ref|XP_006352367.1| PREDICTED: transcription initiation factor I...    67   3e-09
ref|XP_006352364.1| PREDICTED: transcription initiation factor I...    67   3e-09
ref|XP_004250258.1| PREDICTED: transcription initiation factor I...    67   3e-09
gb|EPS63331.1| hypothetical protein M569_11453, partial [Genlise...    64   4e-08
gb|ESW26005.1| hypothetical protein PHAVU_003G083500g [Phaseolus...    63   8e-08
ref|XP_004486214.1| PREDICTED: transcription initiation factor I...    63   8e-08
ref|XP_006467340.1| PREDICTED: transcription initiation factor I...    62   1e-07
ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citr...    62   2e-07
ref|XP_004152016.1| PREDICTED: transcription initiation factor I...    62   2e-07
gb|ESW19654.1| hypothetical protein PHAVU_006G143600g [Phaseolus...    61   2e-07
gb|AAR28013.1| mutant TFIIF-alpha [Arabidopsis thaliana]               61   2e-07
sp|Q9SU25.1|T2FA_ARATH RecName: Full=Transcription initiation fa...    61   2e-07
ref|XP_006586768.1| PREDICTED: transcription initiation factor I...    61   3e-07
ref|XP_006396740.1| hypothetical protein EUTSA_v10028564mg [Eutr...    60   4e-07
ref|XP_002262798.2| PREDICTED: transcription initiation factor I...    60   4e-07
emb|CBI33123.3| unnamed protein product [Vitis vinifera]               60   4e-07
ref|XP_004293352.1| PREDICTED: transcription initiation factor I...    60   5e-07
gb|AAX95773.1| putative transcription initiation factor [Oryza s...    60   7e-07
ref|NP_001064266.1| Os10g0188100 [Oryza sativa Japonica Group] g...    60   7e-07

>gb|ABR16859.1| unknown [Picea sitchensis]
          Length = 366

 Score = 98.6 bits (244), Expect = 1e-18
 Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
 Frame = +2

Query: 158 KDAECQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTS 337
           ++A+C  C +KKDLYAS C H+DP+C+ CA   A + + C  C + +T+V RR+ +K   
Sbjct: 6   ENAKCMKCEAKKDLYASQCKHLDPICITCATVMAKDKTPCPTCLQLVTKVFRRYDLKSYL 65

Query: 338 QKGWSGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDN-------QKRWACYRDGAR 496
               + F+    P+     S   D+  V++Q  +    TDN       ++ W  YR+GA 
Sbjct: 66  PGNATKFLAKFSPK----PSGSVDIVGVDKQPAAGKNTTDNKYFRKSDRRSWIMYREGAE 121

Query: 497 EIRFRIKSNKSTRPLILEDLKADRTFKGKCKLANLKRYFMAQFE 628
             R  +K++  TRP ILE++K    ++GK K  +   Y+M QF+
Sbjct: 122 GKRKNLKTD--TRPWILENVKDKGKYRGKAKPVDNNMYYMVQFD 163


>ref|XP_006352367.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           isoform X4 [Solanum tuberosum]
          Length = 535

 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 2/157 (1%)
 Frame = +2

Query: 170 CQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKGW 349
           C  C S  DLY S C H+  LCL C +  A+    C EC  P+T++IR + V+  S    
Sbjct: 11  CSRCGSSSDLYGSSCKHLT-LCLSCGKNMAETRDKCYECGTPVTRLIREYNVRACSSNDK 69

Query: 350 SGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIRFRIKSN 523
           + F+                        L  F +  N  +W   ++G   R++   ++  
Sbjct: 70  NHFIARF------------------ASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREK 111

Query: 524 KSTRPLILEDLKADRTFKGKCKLANLKRYFMAQFEPE 634
              +P +LED      F G  + A   +Y++   + E
Sbjct: 112 YKNKPWLLEDETGQFQFHGHLEGAQSAQYYLLMMQGE 148


>ref|XP_006352364.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           isoform X1 [Solanum tuberosum]
           gi|565371548|ref|XP_006352365.1| PREDICTED:
           transcription initiation factor IIF subunit alpha-like
           isoform X2 [Solanum tuberosum]
           gi|565371550|ref|XP_006352366.1| PREDICTED:
           transcription initiation factor IIF subunit alpha-like
           isoform X3 [Solanum tuberosum]
          Length = 538

 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 2/157 (1%)
 Frame = +2

Query: 170 CQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKGW 349
           C  C S  DLY S C H+  LCL C +  A+    C EC  P+T++IR + V+  S    
Sbjct: 11  CSRCGSSSDLYGSSCKHLT-LCLSCGKNMAETRDKCYECGTPVTRLIREYNVRACSSNDK 69

Query: 350 SGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIRFRIKSN 523
           + F+                        L  F +  N  +W   ++G   R++   ++  
Sbjct: 70  NHFIARF------------------ASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREK 111

Query: 524 KSTRPLILEDLKADRTFKGKCKLANLKRYFMAQFEPE 634
              +P +LED      F G  + A   +Y++   + E
Sbjct: 112 YKNKPWLLEDETGQFQFHGHLEGAQSAQYYLLMMQGE 148


>ref|XP_004250258.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Solanum lycopersicum]
          Length = 534

 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 2/157 (1%)
 Frame = +2

Query: 170 CQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKGW 349
           C  C S  DLY S C H+  LCL C +  A+    C EC  P+T++IR + V+  S    
Sbjct: 11  CSRCGSSSDLYGSSCKHLT-LCLSCGKNMAETRDKCYECGTPVTRLIREYNVRACSSNDK 69

Query: 350 SGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIRFRIKSN 523
           + F+                        L  F +  N  +W   ++G   R++   ++  
Sbjct: 70  NHFIARF------------------ASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREK 111

Query: 524 KSTRPLILEDLKADRTFKGKCKLANLKRYFMAQFEPE 634
              +P +LED      F G  + A   +Y++   + E
Sbjct: 112 YKNKPWLLEDETGQFQFHGHLEGAQSAQYYLLMMQGE 148


>gb|EPS63331.1| hypothetical protein M569_11453, partial [Genlisea aurea]
          Length = 371

 Score = 63.9 bits (154), Expect = 4e-08
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
 Frame = +2

Query: 170 CQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKGW 349
           C  C S  +LY S C H+  LCL C ++ A+  + C EC  PIT +IR + V+ +     
Sbjct: 16  CGGCGSMTELYGSTCKHLT-LCLSCGKRMAENRAKCYECGTPITVLIREYNVRASCSNEK 74

Query: 350 SGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIRFRIKSN 523
           + F+G         A+  P+    N+ K            W+  ++G   R++   ++  
Sbjct: 75  NYFIG-------RFATGLPNFKKKNENK------------WSMQKEGLQGRQVTDTLREK 115

Query: 524 KSTRPLILEDLKADRTFKGKCKLANLKRYFMAQFE 628
              RP +LED      + G+ + +    Y++   +
Sbjct: 116 YKNRPWLLEDETGQYQYNGQLEGSQSATYYLLMLQ 150


>gb|ESW26005.1| hypothetical protein PHAVU_003G083500g [Phaseolus vulgaris]
          Length = 540

 Score = 62.8 bits (151), Expect = 8e-08
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
 Frame = +2

Query: 170 CQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKGW 349
           C  C S  DLY S C H+  LCL C +  A+  + C +C   +T++IR + V+ +S    
Sbjct: 11  CGGCGSTTDLYGSNCKHMT-LCLTCGKTMAENKAKCFDCGATVTRLIREYSVRASSGSDK 69

Query: 350 SGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIRFRIKSN 523
             F+G          S  PD          F  +   + +W+  ++G  +R++   ++  
Sbjct: 70  HYFIG-------RFVSGLPD----------FSKKKSAENKWSLQKEGLQSRQVTDALREK 112

Query: 524 KSTRPLILEDLKADRTFKGKCKLANLKRYFMAQFE 628
              +P +LED      F+G  + A    Y++   E
Sbjct: 113 YKNKPWLLEDETGQSQFQGHLEGAQSATYYLLMME 147


>ref|XP_004486214.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           isoform X1 [Cicer arietinum]
          Length = 538

 Score = 62.8 bits (151), Expect = 8e-08
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 2/155 (1%)
 Frame = +2

Query: 170 CQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKGW 349
           C  C S  DLY S C H+  LCL C +  A+  + C +C   +T++IR + V+ +S    
Sbjct: 11  CSGCRSTTDLYGSNCKHMT-LCLTCGKTMAENRAKCYDCGATLTRLIREYNVRASSANDK 69

Query: 350 SGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIRFRIKSN 523
           + F+G               + D +++K +       + +W   +DG   RE+   ++  
Sbjct: 70  NYFIGRFM----------TGLPDFSKKKSA-------ENKWCLQKDGLQRREVTDALREK 112

Query: 524 KSTRPLILEDLKADRTFKGKCKLANLKRYFMAQFE 628
              RP +LED      ++G  + +    Y++   E
Sbjct: 113 FKNRPWLLEDETGQSQYQGHLEGSQSATYYLLMKE 147


>ref|XP_006467340.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           isoform X1 [Citrus sinensis]
           gi|568825955|ref|XP_006467341.1| PREDICTED:
           transcription initiation factor IIF subunit alpha-like
           isoform X2 [Citrus sinensis]
          Length = 538

 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
 Frame = +2

Query: 167 ECQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKG 346
           +C  C S+ DLY S C H+  LCL C +  A+  + C +C   +T++IR + V+ ++   
Sbjct: 10  QCSGCGSQADLYGSNCKHMT-LCLTCGKTMAENKAKCFDCGAIVTRLIREYNVRPSNSSD 68

Query: 347 WSGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIRFRIKS 520
            + F+G          S  P          SF  + + + +W  ++DG   R++   ++ 
Sbjct: 69  KNYFIG-------RFVSGLP----------SFSKKKNAENKWTLHKDGLQGRQVTDTLRE 111

Query: 521 NKSTRPLILEDLKADRTFKGKCKLANLKRYFM 616
               +P +LED      ++G  + +    Y++
Sbjct: 112 KYKNKPWMLEDETGQAQYQGHLEGSQSATYYL 143


>ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citrus clementina]
           gi|567915083|ref|XP_006449855.1| hypothetical protein
           CICLE_v10014841mg [Citrus clementina]
           gi|557552465|gb|ESR63094.1| hypothetical protein
           CICLE_v10014841mg [Citrus clementina]
           gi|557552466|gb|ESR63095.1| hypothetical protein
           CICLE_v10014841mg [Citrus clementina]
          Length = 538

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
 Frame = +2

Query: 167 ECQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKG 346
           +C  C S+ DLY S C H+  LCL C +  A+  + C +C   +T++IR + V+ ++   
Sbjct: 10  QCSGCGSQVDLYGSNCKHMT-LCLTCGKTMAENKAKCFDCGAIVTRLIREYNVRPSNSSD 68

Query: 347 WSGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIRFRIKS 520
            + F+G          S  P          SF  + + + +W  ++DG   R++   ++ 
Sbjct: 69  KNYFIG-------RFVSGLP----------SFSKKKNAENKWTLHKDGLQGRQVTDTLRE 111

Query: 521 NKSTRPLILEDLKADRTFKGKCKLANLKRYFM 616
               +P +LED      ++G  + +    Y++
Sbjct: 112 KYKNKPWMLEDETGQAQYQGHLEGSQSATYYL 143


>ref|XP_004152016.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Cucumis sativus] gi|449517383|ref|XP_004165725.1|
           PREDICTED: transcription initiation factor IIF subunit
           alpha-like [Cucumis sativus]
          Length = 538

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
 Frame = +2

Query: 170 CQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKGW 349
           C  C S  +LY S C H+  LCL C +  A+    C +C   +T++IR + V+ ++    
Sbjct: 11  CSGCGSTTELYGSNCKHMT-LCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASNDK 69

Query: 350 SGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIRFRIKSN 523
           + F+G               MS +     +F  + + + +W+ Y++G   R++   ++  
Sbjct: 70  NYFIGRF-------------MSGLP----NFSKKRNAENKWSLYKEGLQGRQLSDALREK 112

Query: 524 KSTRPLILEDLKADRTFKGKCKLANLKRYFM 616
              RP +LED      F+G  + +    Y++
Sbjct: 113 YKNRPWLLEDETGQFQFQGHLEGSQSATYYL 143


>gb|ESW19654.1| hypothetical protein PHAVU_006G143600g [Phaseolus vulgaris]
          Length = 540

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 2/157 (1%)
 Frame = +2

Query: 164 AECQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQK 343
           + C  C S  DLY S C H+  LCL C +  A+  + C +C   +T++IR + V+ +S  
Sbjct: 9   SSCSGCGSTTDLYGSNCKHMT-LCLSCGKTMAENRAKCVDCGVTLTRLIREYNVRASSTN 67

Query: 344 GWSGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIRFRIK 517
             + F+G               + D +++K +       + +WA  ++G   R+I   ++
Sbjct: 68  DKNYFIGRFM----------TGLPDFSKKKSA-------ENKWALQKEGLLGRQITDTLR 110

Query: 518 SNKSTRPLILEDLKADRTFKGKCKLANLKRYFMAQFE 628
                +P +LED      ++G  + +    Y++   E
Sbjct: 111 EKYKNKPWLLEDETGQSQYQGHLEGSQSATYYLLMKE 147


>gb|AAR28013.1| mutant TFIIF-alpha [Arabidopsis thaliana]
          Length = 640

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 41/156 (26%), Positives = 71/156 (45%)
 Frame = +2

Query: 149 CMNKDAECQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 328
           C+  +  C  C S+ DLY S C H+  LCLKC R  A   S C EC   +T++IR + V+
Sbjct: 4   CLQLNTSCVGCGSQSDLYGSSCRHMT-LCLKCGRTMAQNKSKCHECGTVVTRLIREYNVR 62

Query: 329 RTSQKGWSGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDGAREIRF 508
             +    + F+G          +  P+    ++ K S   +    ++   + D  RE   
Sbjct: 63  AAAPTDKNYFIG-------RFVTGLPNFKKGSENKWSLRKDIPQGRQ---FTDAQRE--- 109

Query: 509 RIKSNKSTRPLILEDLKADRTFKGKCKLANLKRYFM 616
           ++K+    +P ILED      ++G  + +    Y++
Sbjct: 110 KLKN----KPWILEDETGQFQYQGHLEGSQSATYYL 141


>sp|Q9SU25.1|T2FA_ARATH RecName: Full=Transcription initiation factor IIF subunit alpha;
           Short=TFIIF-alpha; AltName: Full=General transcription
           factor IIF subunit 1; AltName: Full=Transcription
           initiation factor RAP74 homolog; Short=AtRAP74
           gi|5823572|emb|CAB53754.1| putative protein [Arabidopsis
           thaliana] gi|7267963|emb|CAB78304.1| putative protein
           [Arabidopsis thaliana]
          Length = 649

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 41/156 (26%), Positives = 71/156 (45%)
 Frame = +2

Query: 149 CMNKDAECQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 328
           C+  +  C  C S+ DLY S C H+  LCLKC R  A   S C EC   +T++IR + V+
Sbjct: 4   CLQLNTSCVGCGSQSDLYGSSCRHMT-LCLKCGRTMAQNKSKCHECGTVVTRLIREYNVR 62

Query: 329 RTSQKGWSGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDGAREIRF 508
             +    + F+G          +  P+    ++ K S   +    ++   + D  RE   
Sbjct: 63  AAAPTDKNYFIG-------RFVTGLPNFKKGSENKWSLRKDIPQGRQ---FTDAQRE--- 109

Query: 509 RIKSNKSTRPLILEDLKADRTFKGKCKLANLKRYFM 616
           ++K+    +P ILED      ++G  + +    Y++
Sbjct: 110 KLKN----KPWILEDETGQFQYQGHLEGSQSATYYL 141


>ref|XP_006586768.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Glycine max]
          Length = 536

 Score = 60.8 bits (146), Expect = 3e-07
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 2/157 (1%)
 Frame = +2

Query: 164 AECQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQK 343
           + C  C S  DLY S C H+  LCL C +  A + + C +C   +T++IR + V+ +S  
Sbjct: 9   SSCSGCGSTTDLYGSNCKHM-TLCLGCGKTMAAKRAKCVDCGATLTRLIREYNVRASSPN 67

Query: 344 GWSGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIRFRIK 517
             + F+G          +  PD          F  +   + +W+  +DG   R+I   ++
Sbjct: 68  DKNYFIG-------RFINGLPD----------FSKKKSAENKWSLQKDGLHGRQITDTLR 110

Query: 518 SNKSTRPLILEDLKADRTFKGKCKLANLKRYFMAQFE 628
                +P +LED      F+G  + +    Y++   E
Sbjct: 111 EKYKNKPWLLEDETGQSQFQGHLEGSQSATYYLLMKE 147


>ref|XP_006396740.1| hypothetical protein EUTSA_v10028564mg [Eutrema salsugineum]
           gi|557097757|gb|ESQ38193.1| hypothetical protein
           EUTSA_v10028564mg [Eutrema salsugineum]
          Length = 542

 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 41/159 (25%), Positives = 72/159 (45%)
 Frame = +2

Query: 140 SLKCMNKDAECQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRF 319
           S  C+   +EC  C S  DLY S C H+  LC KC +  A+  S C +C   +T++IR +
Sbjct: 2   SSHCLTLKSECMRCKSPSDLYGSSCRHMT-LCFKCGKTMAENKSKCIDCGTIVTRLIREY 60

Query: 320 RVKRTSQKGWSGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDGARE 499
            V+  +    + F+G          S  P+    ++ K S   +    ++   + D  RE
Sbjct: 61  NVRAAAPTDKNYFIG-------RFVSGLPNFKKGSENKWSLRKDIPQGRQ---FTDAQRE 110

Query: 500 IRFRIKSNKSTRPLILEDLKADRTFKGKCKLANLKRYFM 616
              ++K+    +P ILED      ++G  + +    Y++
Sbjct: 111 ---KLKN----KPWILEDETGQFQYQGHLEGSQSATYYL 142


>ref|XP_002262798.2| PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Vitis vinifera]
          Length = 534

 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 6/159 (3%)
 Frame = +2

Query: 170 CQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKGW 349
           C  C S  DLY S C H+  LCL C +  A+    C +C  P+T++IR + V+  S    
Sbjct: 6   CSGCGSTTDLYGSNCKHMT-LCLSCGKTMAENHGKCYDCGTPVTRLIREYNVRTNSSGDK 64

Query: 350 SGFVGI----LPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIRFR 511
           + F+G     LP                      F  + +   +W+ +++G   R++   
Sbjct: 65  NYFIGRFVTGLP---------------------GFSKKKNADNKWSLHKEGLQGRQVSDA 103

Query: 512 IKSNKSTRPLILEDLKADRTFKGKCKLANLKRYFMAQFE 628
           ++     +P +LED      + G+ + +    Y++   +
Sbjct: 104 LREKYKNKPWLLEDETGQYQYHGQLEGSQSATYYLLMMQ 142


>emb|CBI33123.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 6/159 (3%)
 Frame = +2

Query: 170 CQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKGW 349
           C  C S  DLY S C H+  LCL C +  A+    C +C  P+T++IR + V+  S    
Sbjct: 11  CSGCGSTTDLYGSNCKHMT-LCLSCGKTMAENHGKCYDCGTPVTRLIREYNVRTNSSGDK 69

Query: 350 SGFVGI----LPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIRFR 511
           + F+G     LP                      F  + +   +W+ +++G   R++   
Sbjct: 70  NYFIGRFVTGLP---------------------GFSKKKNADNKWSLHKEGLQGRQVSDA 108

Query: 512 IKSNKSTRPLILEDLKADRTFKGKCKLANLKRYFMAQFE 628
           ++     +P +LED      + G+ + +    Y++   +
Sbjct: 109 LREKYKNKPWLLEDETGQYQYHGQLEGSQSATYYLLMMQ 147


>ref|XP_004293352.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Fragaria vesca subsp. vesca]
          Length = 550

 Score = 60.1 bits (144), Expect = 5e-07
 Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
 Frame = +2

Query: 170 CQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKGW 349
           C  C S  DLY S C H+  LC  C +  A+  + C +C   +T++IR + V+ ++    
Sbjct: 11  CGGCGSTSDLYGSNCKHM-TLCCACGKTMAENKAKCYDCGAVVTRLIREYNVRASTASEK 69

Query: 350 SGFVGI----LPPEQQEDASED-----PDMSDVNQQKLSFFPETDNQKRWACYRDGAREI 502
           S F+G     LP   ++ ++E+      D+SD  + K     +  +QK++   R      
Sbjct: 70  SYFIGRFVTGLPNFSKKKSAENKWTLRKDLSDPRRSK---DKDGQDQKKYKDVRPPTEAS 126

Query: 503 RFRIKSNKSTRPLILEDLKADRTFKGKCKLANLKRYFMAQFE 628
           R ++K+    +P +LED      + G+ + A    Y++   +
Sbjct: 127 REKLKN----KPWVLEDETGQSQYNGQLEGAQSAIYYLLMMQ 164


>gb|AAX95773.1| putative transcription initiation factor [Oryza sativa Japonica
           Group] gi|78708004|gb|ABB46979.1| mutant TFIIF-alpha,
           putative, expressed [Oryza sativa Japonica Group]
          Length = 531

 Score = 59.7 bits (143), Expect = 7e-07
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
 Frame = +2

Query: 164 AECQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVK--RTS 337
           A C+ C S  DLY + C H   LC  C +  A   + C  C+ PIT +IR + V+   T+
Sbjct: 10  AACEGCGSPSDLYGTSCKHTT-LCSSCGKSMALSGARCLVCSAPITNLIREYNVRANATT 68

Query: 338 QKGWS--GFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIR 505
            K +S   FV  LPP  ++ ++E+                     +W+ +++G   R+I 
Sbjct: 69  DKSFSIGRFVTGLPPFSKKKSAEN---------------------KWSLHKEGLQGRQIP 107

Query: 506 FRIKSNKSTRPLILEDLKADRTFKGK 583
             ++   + +P ILED      ++G+
Sbjct: 108 ENMREKYNRKPWILEDETGQYQYQGQ 133


>ref|NP_001064266.1| Os10g0188100 [Oryza sativa Japonica Group]
           gi|62733662|gb|AAX95774.1| putative transcription
           initiation factor [Oryza sativa Japonica Group]
           gi|78708005|gb|ABB46980.1| mutant TFIIF-alpha, putative,
           expressed [Oryza sativa Japonica Group]
           gi|113638875|dbj|BAF26180.1| Os10g0188100 [Oryza sativa
           Japonica Group] gi|215713568|dbj|BAG94705.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|215769198|dbj|BAH01427.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 529

 Score = 59.7 bits (143), Expect = 7e-07
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
 Frame = +2

Query: 164 AECQDCHSKKDLYASVCTHIDPLCLKCARKYADESSACSECNEPITQVIRRFRVK--RTS 337
           A C+ C S  DLY + C H   LC  C +  A   + C  C+ PIT +IR + V+   T+
Sbjct: 10  AACEGCGSPSDLYGTSCKHTT-LCSSCGKSMALSGARCLVCSAPITNLIREYNVRANATT 68

Query: 338 QKGWS--GFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQKRWACYRDG--AREIR 505
            K +S   FV  LPP  ++ ++E+                     +W+ +++G   R+I 
Sbjct: 69  DKSFSIGRFVTGLPPFSKKKSAEN---------------------KWSLHKEGLQGRQIP 107

Query: 506 FRIKSNKSTRPLILEDLKADRTFKGK 583
             ++   + +P ILED      ++G+
Sbjct: 108 ENMREKYNRKPWILEDETGQYQYQGQ 133