BLASTX nr result
ID: Ephedra27_contig00023256
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00023256
(1370 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABR17440.1| unknown [Picea sitchensis] 322 2e-85
ref|XP_001754105.1| predicted protein [Physcomitrella patens] gi... 254 8e-65
ref|XP_001700791.1| hypothetical protein CHLREDRAFT_155892 [Chla... 223 2e-55
ref|XP_002503679.1| RNA polymerase [Micromonas sp. RCC299] gi|22... 209 3e-51
ref|XP_003055453.1| predicted protein [Micromonas pusilla CCMP15... 199 3e-48
ref|XP_005849549.1| hypothetical protein CHLNCDRAFT_59631 [Chlor... 195 4e-47
ref|XP_001422238.1| predicted protein [Ostreococcus lucimarinus ... 195 4e-47
ref|XP_006845803.1| hypothetical protein AMTR_s00019p00255850 [A... 194 7e-47
ref|XP_003084167.1| RNA polymerase III, subunit C34 (ISS) [Ostre... 193 2e-46
ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III s... 192 4e-46
ref|XP_005649155.1| RNA polymerase Rpc34 [Coccomyxa subellipsoid... 189 2e-45
ref|XP_002954233.1| hypothetical protein VOLCADRAFT_118667 [Volv... 189 2e-45
gb|ESW11339.1| hypothetical protein PHAVU_008G021700g [Phaseolus... 189 3e-45
gb|EMJ10006.1| hypothetical protein PRUPE_ppa024742mg [Prunus pe... 185 4e-44
ref|XP_785983.3| PREDICTED: DNA-directed RNA polymerase III subu... 184 6e-44
gb|EXB67305.1| DNA-directed RNA polymerase III subunit RPC6 [Mor... 184 1e-43
ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III s... 182 3e-43
emb|CBI33284.3| unnamed protein product [Vitis vinifera] 181 6e-43
ref|XP_003635557.1| PREDICTED: DNA-directed RNA polymerase III s... 181 6e-43
ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III s... 179 2e-42
>gb|ABR17440.1| unknown [Picea sitchensis]
Length = 262
Score = 322 bits (826), Expect = 2e-85
Identities = 155/262 (59%), Positives = 201/262 (76%), Gaps = 2/262 (0%)
Frame = -1
Query: 989 MEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRKELSDKLSGLSQEDRIVYQ 810
MEENL+DV L VR QA+N L + QL+ +KQG F VYK KE S + GLS ED ++YQ
Sbjct: 1 MEENLKDVDLNVRAQALNALLQKRQLQIFKQGDFIVYKQQTKEESVRFKGLSSEDMLIYQ 60
Query: 809 AIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIK--NSQGKKVFMLAELSP 636
AI+ AGN GIWT +KRETNL +PQ KALKNLE R +IK +K ++Q KKV+MLAEL+P
Sbjct: 61 AIKNAGNMGIWTKDMKRETNLQQPQVNKALKNLEARGLIKGVKCVSNQAKKVYMLAELTP 120
Query: 635 SDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSGILKEQIKIDA 456
S ++TGG +YT D E NIVK CL+ V Q+ +AT+ES+AD V+ SGI K ++K++
Sbjct: 121 SKEITGGAWYTGQNFDTEFTNIVKQQCLQFVLQQGVATIESVADFVRKSGISKVELKVEE 180
Query: 455 VKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQIRAQETSAFTNVPCGICPVLH 276
+KQ++DML++D +VEEV STG G+F++IP+N CYR SQ R QE+SAFTN+PCG+CPVL
Sbjct: 181 LKQILDMLVLDGDVEEVISTGTGDFAAIPINKLCYRGSQARIQESSAFTNIPCGVCPVLR 240
Query: 275 ECTEDGLISPKTCIYFNKWLSF 210
ECT+DGLISPKTCIY+ KWL+F
Sbjct: 241 ECTDDGLISPKTCIYYKKWLTF 262
>ref|XP_001754105.1| predicted protein [Physcomitrella patens] gi|162694659|gb|EDQ81006.1|
predicted protein [Physcomitrella patens]
Length = 361
Score = 254 bits (648), Expect = 8e-65
Identities = 128/268 (47%), Positives = 185/268 (69%), Gaps = 2/268 (0%)
Frame = -1
Query: 1007 GLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRKELSDKLSGLSQE 828
GL ++++E + D LE+ QA+N L +L + QG VYK +++ K GLS E
Sbjct: 101 GLPQRVLDEEIPD--LEMLSQALNFLLSKQKLVVFTQGDNIVYKEQSADVAVKFKGLSSE 158
Query: 827 DRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN--SQGKKVFM 654
D +VYQ+I+ A N GIWT +KR TNL +PQ KALKNLE R+++K +K ++ +KV+M
Sbjct: 159 DMLVYQSIEAAANQGIWTADLKRRTNLQQPQINKALKNLEGRSLVKAVKTVTNKNRKVYM 218
Query: 653 LAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSGILKE 474
L +L+PS ++TGG +YT+ D E +++VK CL+ + ++ LA LE+IAD +K SGI +
Sbjct: 219 LFDLTPSREVTGGAWYTEQDYDAEFVDVVKQQCLQFITRQGLADLEAIADAIKKSGITQV 278
Query: 473 QIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQIRAQETSAFTNVPCG 294
++ ++ KQ+MD L++D +VEE + G G +SS +T CYRV++ R ETSA TNVPCG
Sbjct: 279 ELGLEEFKQIMDTLVLDGDVEE--TMGGGTYSS---DTLCYRVAKARIPETSALTNVPCG 333
Query: 293 ICPVLHECTEDGLISPKTCIYFNKWLSF 210
ICPVLHEC GL+SP+TC+YFN WLSF
Sbjct: 334 ICPVLHECQPGGLVSPETCVYFNDWLSF 361
>ref|XP_001700791.1| hypothetical protein CHLREDRAFT_155892 [Chlamydomonas reinhardtii]
gi|158281290|gb|EDP07045.1| predicted protein
[Chlamydomonas reinhardtii]
Length = 285
Score = 223 bits (567), Expect = 2e-55
Identities = 111/291 (38%), Positives = 182/291 (62%), Gaps = 3/291 (1%)
Frame = -1
Query: 1073 VSAAQLNSAINQILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQG 894
++AA+ Q+L+L + HP G+TD +E L V L+ RV A+N L A +L+ K
Sbjct: 1 MAAAKEKQLEEQLLQLLRQHPQGMTDDALESALPAVPLQERVHAVNSLLAASRLQLLKTS 60
Query: 893 SFN-VYKILRKELSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALK 717
+ VYK + E + K GLS E+ ++YQ I+ AGN G+WT ++ TNLA+PQ K LK
Sbjct: 61 NGKLVYKEVAVEEAAKFKGLSPEELLIYQCIKTAGNTGVWTKDMRIRTNLAQPQITKILK 120
Query: 716 NLETRAMIKQIKN--SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIV 543
LE R ++K +KN S +KV+MLAEL PS +LTGG +YT+N+ D E IN++++ C +
Sbjct: 121 VLEGRKLVKAVKNVNSPSRKVYMLAELEPSRELTGGAWYTENQFDSEFINVLREACFSYI 180
Query: 542 AQKKLATLESIADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMN 363
+++ +L ++A +++ G K +++ + ++ ++ L+ D V+EV G+ + N
Sbjct: 181 SRQGDVSLSAVAAFIRAKGFSKVELRTEDIQTIVMTLVYDGRVDEVEPEGEDD------N 234
Query: 362 TQCYRVSQIRAQETSAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
YR + + +++ T+VPCG+CPV +C + G+ISPKTC+Y++KWL F
Sbjct: 235 DDHYRPAVLPVPDSTPLTDVPCGVCPVAGQCHDGGVISPKTCVYYDKWLEF 285
>ref|XP_002503679.1| RNA polymerase [Micromonas sp. RCC299] gi|226518946|gb|ACO64937.1|
RNA polymerase [Micromonas sp. RCC299]
Length = 307
Score = 209 bits (531), Expect = 3e-51
Identities = 106/293 (36%), Positives = 174/293 (59%), Gaps = 19/293 (6%)
Frame = -1
Query: 1037 ILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRKEL 858
ILE + HP G+ D+ + + + + + R QAIN L + +L+ YK G VY+++ +E
Sbjct: 6 ILEQCRLHPEGIPDQDLAQKISHIPVNDRAQAINSLLSSRKLQIYKDGDTIVYRMVMQEE 65
Query: 857 SDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN 678
+ K GL+ ED +VYQ IQ++GN+GIWT +K+ +NLA+ Q K K+LE+R +IK +K+
Sbjct: 66 AVKFRGLASEDLLVYQIIQQSGNSGIWTKELKQRSNLAQAQITKIFKSLESRKLIKAVKS 125
Query: 677 --SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIAD 504
Q +KV+ML EL PS ++TGG +YT+++ D E IN++++ C + + + TL+ ++D
Sbjct: 126 VSQQNRKVYMLYELEPSREITGGAWYTEHEYDAEFINVLREQCEKFIVGQGKVTLDQVSD 185
Query: 503 LVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMN------------- 363
VK + + ++ + V Q+++ L+ D +V++ KGE +
Sbjct: 186 FVKKTKLSHVELGKEEVLQIVNTLVYDGKVDQFDEHEKGEGDADDAKGDGDVGNDERDYG 245
Query: 362 ----TQCYRVSQIRAQETSAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWL 216
Y + E SAFT+VPCG+CPV +EC GLISP+TC+Y +WL
Sbjct: 246 DGEKVTYYVPAAYPVPEKSAFTSVPCGVCPVFNECRPGGLISPETCVYMEEWL 298
>ref|XP_003055453.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463427|gb|EEH60705.1| predicted protein [Micromonas
pusilla CCMP1545]
Length = 294
Score = 199 bits (505), Expect = 3e-48
Identities = 102/285 (35%), Positives = 165/285 (57%), Gaps = 10/285 (3%)
Frame = -1
Query: 1037 ILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRKEL 858
ILE + HP G+ D + + + + R AIN L + +++ YK G +Y+ ++K+
Sbjct: 6 ILEQCRLHPQGIPDADLAMEIAHIPVNERASAINALLSSRKIQVYKDGDSLIYREVQKDE 65
Query: 857 SDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN 678
+ K GLS ED +VYQ IQ +GN GIWT +K+++NL + Q K K LE R +IK +KN
Sbjct: 66 AVKFKGLSSEDLLVYQIIQSSGNTGIWTKELKQKSNLPQTQITKIFKVLEARKLIKSVKN 125
Query: 677 --SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIAD 504
Q +KV+ML EL PS ++TGG +YT+++ D E I+++++ C + + + ATL+ + D
Sbjct: 126 VAQQNRKVYMLFELEPSREITGGAWYTEHEYDAEFISVLREQCDKFINSRGKATLDDVWD 185
Query: 503 LVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEV--------TSTGKGEFSSIPMNTQCYR 348
VK + + + + V Q+++ L+ D +++ + + KG+ + Y
Sbjct: 186 FVKRAKLSNVDLGKEEVLQIVNTLVYDGKIDAIEVPDPNFKPTAKKGKDIDAGHEGEDYS 245
Query: 347 VSQIRAQETSAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWLS 213
+ I SA TNVPCG+CPV EC GLISP+TC Y + WL+
Sbjct: 246 PAAIPIPSESALTNVPCGLCPVFEECVPGGLISPETCEYMDAWLA 290
>ref|XP_005849549.1| hypothetical protein CHLNCDRAFT_59631 [Chlorella variabilis]
gi|307109209|gb|EFN57447.1| hypothetical protein
CHLNCDRAFT_59631 [Chlorella variabilis]
Length = 281
Score = 195 bits (495), Expect = 4e-47
Identities = 107/281 (38%), Positives = 166/281 (59%), Gaps = 5/281 (1%)
Frame = -1
Query: 1037 ILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFY---KQGSFNVYKILR 867
IL + + HP G+ D +E L V++ R AIN L + +L+ S ++YK
Sbjct: 9 ILTVCRKHPEGVQDTALEAELPSVAVNDRAVAINSLLASLKLQILVNPADPSSHIYKASA 68
Query: 866 KELSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQ 687
+ + GL+ ED +VYQ IQ AGN GIWT +K+ TNL +P+ K LK LE R ++K
Sbjct: 69 VGDATRFKGLTAEDMLVYQCIQGAGNMGIWTRDMKQRTNLQQPKINKILKTLEERCLVKS 128
Query: 686 IKNSQG--KKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLES 513
IK+ Q +KV+ML EL P+ +LTGG +Y + D E I ++++ + + K ATL
Sbjct: 129 IKSVQNASRKVYMLYELEPAKELTGGPWYGPDAFDSEFITVLQEATMSYINTKGDATLAD 188
Query: 512 IADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQIR 333
I +K +GI K+ ++ D V+++++ L D ++E V +G+ +P YR+ +
Sbjct: 189 IVRFIKETGISKQALQEDDVERIINTLECDGKIEGV----EGDEDGLPH----YRLPLMS 240
Query: 332 AQETSAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
E + FT++PCG+CPV +EC E G ISP+TCIYF++WL F
Sbjct: 241 IPEATPFTSIPCGVCPVFNECVEGGKISPQTCIYFDQWLDF 281
>ref|XP_001422238.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582478|gb|ABP00555.1| predicted protein
[Ostreococcus lucimarinus CCE9901]
Length = 259
Score = 195 bits (495), Expect = 4e-47
Identities = 95/259 (36%), Positives = 161/259 (62%), Gaps = 6/259 (2%)
Frame = -1
Query: 968 VSLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRKELSDKLSGLSQEDRIVYQAIQRAGN 789
+S+E R +AIN L + +++ + +G VY +R+ + K GLS ED +VYQ IQ AGN
Sbjct: 1 MSVEERAEAINTLLREKKIDVFGRGGGLVYARVREAQAAKFKGLSTEDMLVYQIIQHAGN 60
Query: 788 NGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN--SQGKKVFMLAELSPSDDLTGG 615
G+WT +K+ +NL PQ K K LE R +IK +K+ Q +KV+ML EL PS ++TGG
Sbjct: 61 AGMWTKELKQRSNLPVPQITKIFKTLEARKLIKSVKHVAQQNRKVYMLYELEPSREITGG 120
Query: 614 VFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSGILKEQIKIDAVKQVMDM 435
+YT+ + D E I+++++ C++ + ++ TL+ ++D V++S + + + D V Q+++
Sbjct: 121 AWYTEQEYDAEFISVLREQCVKFIYSRERVTLKEVSDFVRASELSRIDLGQDEVLQIVNT 180
Query: 434 LIIDHEVEEV----TSTGKGEFSSIPMNTQCYRVSQIRAQETSAFTNVPCGICPVLHECT 267
L+ D +V+E+ G G+ Y + + E++A+T++PCG+CPV++EC
Sbjct: 181 LVYDGKVDEIKDESQDDGMGKADEDFQPITFYTRAALPVPESNAYTDIPCGVCPVINECR 240
Query: 266 EDGLISPKTCIYFNKWLSF 210
DGLI+P +C Y WL+F
Sbjct: 241 PDGLINPSSCEYMTAWLNF 259
>ref|XP_006845803.1| hypothetical protein AMTR_s00019p00255850 [Amborella trichopoda]
gi|548848375|gb|ERN07478.1| hypothetical protein
AMTR_s00019p00255850 [Amborella trichopoda]
Length = 230
Score = 194 bits (493), Expect = 7e-47
Identities = 93/212 (43%), Positives = 144/212 (67%), Gaps = 2/212 (0%)
Frame = -1
Query: 839 LSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKNSQG--K 666
L+ +D+ VY+ I+++GN GIW+ +K+ + E K+LK L ++ +IK + N +
Sbjct: 21 LAHDDKKVYEMIEKSGNKGIWSAEMKKY--IPENILNKSLKLLLSKNLIKLVANVHNPRR 78
Query: 665 KVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSG 486
KV+MLA L PS++++GG +Y+ + D ELI+++K LR + + K+ L+ IAD +K+S
Sbjct: 79 KVYMLANLQPSEEISGGTWYSGKEFDTELIDVLKQHTLRFITKMKVVILDKIADSIKTSE 138
Query: 485 ILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQIRAQETSAFTN 306
ILK +++I VKQV+D LI+D E+E V S G EF SIP CYR ++ E ++F +
Sbjct: 139 ILKVEVRIQEVKQVVDSLILDREIEAVLSNGSAEFLSIPKGKVCYRCRKMGHLEPASFVS 198
Query: 305 VPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
VPCG+CPV++ECT DG+ISPKTC Y+ +WL F
Sbjct: 199 VPCGVCPVINECTPDGVISPKTCEYYQRWLDF 230
>ref|XP_003084167.1| RNA polymerase III, subunit C34 (ISS) [Ostreococcus tauri]
gi|116056050|emb|CAL58583.1| RNA polymerase III, subunit
C34 (ISS) [Ostreococcus tauri]
Length = 371
Score = 193 bits (490), Expect = 2e-46
Identities = 98/274 (35%), Positives = 164/274 (59%), Gaps = 7/274 (2%)
Frame = -1
Query: 1010 NGLTDKMMEENLRDV-SLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRKELSDKLSGLS 834
NG+ ++ + L V S+ R +AIN L ++E +K+G VY +R+E + K GLS
Sbjct: 98 NGVREQDLATMLHGVMSVNERAEAINALLSERKIEIFKRGDSLVYARVREERAAKFKGLS 157
Query: 833 QEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN--SQGKKV 660
ED +VYQ IQ AGN G+WT +K+ +NL PQ K K LE R +IK +K+ Q +KV
Sbjct: 158 TEDMLVYQIIQHAGNAGMWTKELKQRSNLPVPQITKIFKTLEARKLIKAVKHVTQQNRKV 217
Query: 659 FMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSGIL 480
+ML EL PS ++TGG +YT+ D E IN++++ C++ + + TL +++ V+SS +
Sbjct: 218 YMLYELEPSREITGGAWYTEGTHDDEFINVLREQCVKFIYSRDRVTLSEVSEFVRSSKLS 277
Query: 479 KEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIP----MNTQCYRVSQIRAQETSAF 312
++ D V Q+++ L+ D +V+E + + ++ + Y + + +++ +
Sbjct: 278 HVELGTDEVLQIVNTLVFDGKVDENEDESQDDGMTVADEDFKAVKYYSRAALPVPDSNPY 337
Query: 311 TNVPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
T++PCG+CPV++EC DGLI+P C Y WL+F
Sbjct: 338 TDIPCGVCPVINECRPDGLINPIDCEYMTAWLNF 371
>ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Glycine max]
Length = 239
Score = 192 bits (487), Expect = 4e-46
Identities = 92/236 (38%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Frame = -1
Query: 899 QGSFNVYKILRKELSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKAL 720
QGS ++ K R++L+ L+ +R++Y I + GIWT +KRETNL + +K+L
Sbjct: 5 QGSSSL-KRKRQDLALVTGSLTDGERVLYNLIHSKKDMGIWTGDMKRETNLPDSIVKKSL 63
Query: 719 KNLETRAMIKQIKNSQ--GKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRI 546
K L+++ +IK++ N Q G+K +M AE PS ++TGGV+Y +LD + IN+VKDVCL+
Sbjct: 64 KLLQSKNLIKEVVNIQNKGRKHYMAAEFEPSKEITGGVWYNQGRLDTDFINLVKDVCLKY 123
Query: 545 VAQKKLATLESIADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPM 366
+ ++K+AT + + + + SG+ ++ + +++ L++D E+ EV STG G+FSS+P+
Sbjct: 124 IFRQKVATRDGVMEWSRKSGVFNVEVTTQQIDEILRTLVLDDEIVEVKSTGFGDFSSVPV 183
Query: 365 NTQCYRVSQIRA----QETSAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
CYR Q+ A ++PCG+CP ++ CT DG+ISP+TC+Y+ KWL F
Sbjct: 184 GRICYRCKSKGGNRGEQKPGAMASIPCGVCPRINFCTPDGIISPRTCVYYQKWLDF 239
>ref|XP_005649155.1| RNA polymerase Rpc34 [Coccomyxa subellipsoidea C-169]
gi|384251133|gb|EIE24611.1| RNA polymerase Rpc34
[Coccomyxa subellipsoidea C-169]
Length = 275
Score = 189 bits (480), Expect = 2e-45
Identities = 103/280 (36%), Positives = 165/280 (58%), Gaps = 4/280 (1%)
Frame = -1
Query: 1037 ILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFN--VYKILRK 864
IL L + HP GL + ++E+ + R A+N L +L + N VY+ + +
Sbjct: 9 ILALCRQHPEGLPEAVLEQYIPATQ---RTTAMNNLLAKHRLRILQHPRDNSLVYQEVIQ 65
Query: 863 ELSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQI 684
E + KL GLS ED +VYQ I +AG+ GIWT +K TNL +PQ K LKNL+ R+++K +
Sbjct: 66 EEAAKLKGLSAEDLLVYQHIAQAGDTGIWTKDLKNRTNLQQPQITKILKNLDQRSLVKSV 125
Query: 683 KN--SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESI 510
K+ + +KV++L EL P+ +LTGG +YT D E I +++ C + + + +ATLE +
Sbjct: 126 KSVINPSRKVYILFELEPARELTGGAWYTGQDFDAEFIQVLQQACHKYIENEGVATLEEV 185
Query: 509 ADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQIRA 330
AD V++ G + +++ V ++ L D VE SS+ + + YR ++
Sbjct: 186 ADFVRTKGFSRVELRDADVLCILRTLEFDGLVE----------SSLSDDGEVYRPARHVV 235
Query: 329 QETSAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
+TS FT++PCG+CPV++EC++ G+ISP TC Y+ WL F
Sbjct: 236 PKTSPFTSMPCGVCPVINECSDGGVISPSTCTYYQTWLDF 275
>ref|XP_002954233.1| hypothetical protein VOLCADRAFT_118667 [Volvox carteri f.
nagariensis] gi|300260438|gb|EFJ44657.1| hypothetical
protein VOLCADRAFT_118667 [Volvox carteri f. nagariensis]
Length = 271
Score = 189 bits (480), Expect = 2e-45
Identities = 105/290 (36%), Positives = 167/290 (57%), Gaps = 5/290 (1%)
Frame = -1
Query: 1064 AQLNSAINQILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFN 885
A S +L L + +P G+TD+ + L V +E RV A+N L A +L+ K S
Sbjct: 2 AAARSVEEDLLRLLRQNPQGVTDEALSAALPGVPIEERVNAVNSLLAANRLQLLKNSSNK 61
Query: 884 -VYKILRKELSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLE 708
VYK + E + K GLS E+ ++YQ I+ AGN G+ P K LK LE
Sbjct: 62 IVYKEVAAEEAAKFKGLSTEELLLYQCIKAAGNTGM-------------PGITKILKVLE 108
Query: 707 TRAMIKQIKN--SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQK 534
+R ++K +KN + +KV+ML+EL PS +LTGG +YT+N+ D E IN++++ C + +K
Sbjct: 109 SRRLVKSVKNVNNPSRKVYMLSELEPSRELTGGAWYTENQFDSEFINVLREACYSYIKRK 168
Query: 533 KL--ATLESIADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNT 360
++L IA ++S G K +++I+ + ++ L+ D V+EV G +
Sbjct: 169 DKVSSSLGEIAAFIRSRGFSKVELRIEDIHTIIMTLVYDGRVDEVEPEGDEDEDH----- 223
Query: 359 QCYRVSQIRAQETSAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
YR++ + ++++ T+VPCG+CPV EC E G+ISP+TCIY++KWL F
Sbjct: 224 --YRLAVLGIPDSTSLTDVPCGVCPVAGECAEGGVISPQTCIYYDKWLEF 271
>gb|ESW11339.1| hypothetical protein PHAVU_008G021700g [Phaseolus vulgaris]
Length = 239
Score = 189 bits (479), Expect = 3e-45
Identities = 87/226 (38%), Positives = 146/226 (64%), Gaps = 6/226 (2%)
Frame = -1
Query: 869 RKELSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIK 690
R++L+ ++ +R++Y I + GIWT +KRETNL + +K+LK L+++ +IK
Sbjct: 14 RQDLALVSGSMTDGERVLYNLIHSKKDMGIWTGDMKRETNLPDSIVKKSLKLLQSKNLIK 73
Query: 689 QIKNSQ--GKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLE 516
++ N Q G+K +M AE PS ++TGG +YT LD + IN+VK+VCL+ + ++K+AT +
Sbjct: 74 EVVNIQNKGRKHYMAAEFEPSKEITGGDWYTQGSLDTDFINLVKEVCLKCIFRQKVATHD 133
Query: 515 SIADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQI 336
+ + + SG+ ++ + +++ L++D E+EEV STG G+FSS+P+ CYR
Sbjct: 134 GVLEWSRKSGVFTVEVTAQQIDEILRALVLDDEIEEVKSTGLGDFSSVPVGRICYRCKSK 193
Query: 335 RA----QETSAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
Q+ A ++PCG+CP ++ CT DG+ISP+TC+Y+ KWL F
Sbjct: 194 GGNRGEQKPGAMASIPCGVCPRINFCTPDGIISPRTCVYYQKWLDF 239
>gb|EMJ10006.1| hypothetical protein PRUPE_ppa024742mg [Prunus persica]
Length = 236
Score = 185 bits (469), Expect = 4e-44
Identities = 91/222 (40%), Positives = 140/222 (63%), Gaps = 6/222 (2%)
Frame = -1
Query: 857 SDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN 678
S L++ ++IVY I+ + GIWT +K+E NL + K++K+L+ + +IK++ N
Sbjct: 15 SSPSESLTEHEKIVYSVIRSKQDMGIWTRDMKKEANLPDNLVGKSIKSLQAKNLIKEVVN 74
Query: 677 --SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIAD 504
S+G+K +M AE PS +LTGG +Y++ LD I+ VKD +I+ Q K+ATLE I+D
Sbjct: 75 VQSKGRKHYMAAEFEPSKELTGGDWYSNGTLDKYYISCVKDGFAKIIYQLKVATLEGISD 134
Query: 503 LVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVS----QI 336
VK SGI K +++++ +L++D V EV STG GEF S P+ CY+ +
Sbjct: 135 EVKKSGIFKTSFTKQQIEEILRVLVLDKRVTEVKSTGMGEFGSFPVGKVCYKSTSKGGSK 194
Query: 335 RAQETSAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
R + A ++PCG+CP + +CT DG+ISP+TC+YF KWL F
Sbjct: 195 REPKVGAMASIPCGVCPRISQCTPDGIISPRTCVYFTKWLDF 236
>ref|XP_785983.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like isoform
1 [Strongylocentrotus purpuratus]
Length = 311
Score = 184 bits (468), Expect = 6e-44
Identities = 98/296 (33%), Positives = 162/296 (54%), Gaps = 19/296 (6%)
Frame = -1
Query: 1040 QILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRKE 861
+ILEL K +P+G+ D +++ L +V RV A+NRL +G+++ K + VY++
Sbjct: 18 RILELCKQNPDGIADSTLQKELPNVDTRQRVSAVNRLLSSGKIDLVKTSNELVYRLKDPG 77
Query: 860 LSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIK 681
+ K+ G ++R+VYQ I+++GN GIWT I+ ++NL Q K LKNLE+R +IK +K
Sbjct: 78 VVSKIKGADNQERLVYQIIEQSGNKGIWTRDIRLKSNLQLTQLNKILKNLESRKLIKAVK 137
Query: 680 N--SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQK--------- 534
+ + KK +ML L+P +TGG +Y+D + + E + ++ C + + QK
Sbjct: 138 SVGAARKKAYMLFNLTPDPSVTGGTWYSDQEFESEFVEVLNHQCFKFLQQKVESVSALQL 197
Query: 533 --------KLATLESIADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFS 378
+ E + + I K + +D + +++ LI D +VE S G G S
Sbjct: 198 DPLLKRNRSFVSPEEVWKFITELRISKVDLSVDDINTILNTLIYDGKVEMTISAGAGT-S 256
Query: 377 SIPMNTQCYRVSQIRAQETSAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
S +++ YR Q Q T + PCG+CPV ++C E G ISP TCIY +W+ +
Sbjct: 257 SSDSSSKLYRAIQPLTQPTGLMRS-PCGVCPVFNQCYEGGAISPSTCIYMKEWMDY 311
>gb|EXB67305.1| DNA-directed RNA polymerase III subunit RPC6 [Morus notabilis]
Length = 238
Score = 184 bits (466), Expect = 1e-43
Identities = 86/218 (39%), Positives = 146/218 (66%), Gaps = 5/218 (2%)
Frame = -1
Query: 848 LSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKNSQ- 672
L L++ +RI+Y I+ + GIW +KR + + + KALK+LET+ +IK++ N Q
Sbjct: 21 LDSLTEHERIIYNVIRSKQDMGIWMQDMKRVAKVPDNVANKALKSLETKKLIKEVVNIQK 80
Query: 671 -GKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVK 495
GKK ++ AE P+ ++TGG +Y++ K+D +INI+KD CL+ + ++++ATLE I D ++
Sbjct: 81 RGKKHYVAAEFEPATEITGGAWYSNGKMDFVVINILKDQCLKWIYKQRVATLEGILDAIR 140
Query: 494 SSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQIRAQ---E 324
SGI ++ +++++ L++D+EV EV S G GEF SIP+ CY+ + ++ +
Sbjct: 141 KSGISNVELTTVQIEELVRALVLDNEVVEVKSNGMGEFDSIPVGKVCYKSTSKGSRGDPK 200
Query: 323 TSAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
A +++PCG+CP + +CT DG+ISPKTC Y+++WL F
Sbjct: 201 IGAMSSIPCGVCPRISDCTPDGIISPKTCKYYSQWLDF 238
>ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 182 bits (462), Expect = 3e-43
Identities = 85/217 (39%), Positives = 136/217 (62%), Gaps = 7/217 (3%)
Frame = -1
Query: 839 LSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN--SQGK 666
L +R++Y I+ + GIWT +KRETNL + K+LK L+ + +IK++ N S+G+
Sbjct: 23 LLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQVKKLIKEVVNIQSKGR 82
Query: 665 KVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSG 486
K +M E PS +LTGG +Y + LD E I I+K+ C+R++++ K+AT E I++ + +G
Sbjct: 83 KHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVRVLSKLKVATAEGISESINKTG 142
Query: 485 ILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQI-----RAQET 321
+ + + +++ L++D+E+ EV S+G GEFSSIP+ CYR +
Sbjct: 143 LCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCYRCTNKGGLGGGGPTI 202
Query: 320 SAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
A ++PCG+CP + +CT DG+ISPKTC Y+ KWL F
Sbjct: 203 GAMASIPCGVCPRITQCTPDGIISPKTCAYYTKWLDF 239
>emb|CBI33284.3| unnamed protein product [Vitis vinifera]
Length = 300
Score = 181 bits (459), Expect = 6e-43
Identities = 85/217 (39%), Positives = 135/217 (62%), Gaps = 7/217 (3%)
Frame = -1
Query: 839 LSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN--SQGK 666
L +R++Y I+ + GIWT +KRETNL + K+LK L+ + +IK++ N S+G+
Sbjct: 84 LLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQVKKLIKEVVNIQSKGR 143
Query: 665 KVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSG 486
K +M E PS +LTGG +Y + LD E I I+K C+R++++ K+AT E I++ + +G
Sbjct: 144 KHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKKTCVRVLSKLKVATAEGISESINKTG 203
Query: 485 ILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQI-----RAQET 321
+ + + +++ L++D+E+ EV S+G GEFSSIP+ CYR +
Sbjct: 204 LCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCYRCTNKGGLGGGGPTI 263
Query: 320 SAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
A ++PCG+CP + +CT DG+ISPKTC Y+ KWL F
Sbjct: 264 GAMASIPCGVCPRITQCTPDGIISPKTCAYYTKWLDF 300
>ref|XP_003635557.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 181 bits (459), Expect = 6e-43
Identities = 85/217 (39%), Positives = 135/217 (62%), Gaps = 7/217 (3%)
Frame = -1
Query: 839 LSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN--SQGK 666
L +R++Y I+ + GIWT +KRETNL + K+LK L+ + +IK++ N S+G+
Sbjct: 23 LLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQVKKLIKEVVNIQSKGR 82
Query: 665 KVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSG 486
K +M E PS +LTGG +Y + LD E I I+K C+R++++ K+AT E I++ + +G
Sbjct: 83 KHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKKTCVRVLSKLKVATAEGISESINKTG 142
Query: 485 ILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQI-----RAQET 321
+ + + +++ L++D+E+ EV S+G GEFSSIP+ CYR +
Sbjct: 143 LCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCYRCTNKGGLGGGGPTI 202
Query: 320 SAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
A ++PCG+CP + +CT DG+ISPKTC Y+ KWL F
Sbjct: 203 GAMASIPCGVCPRITQCTPDGIISPKTCAYYTKWLDF 239
>ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 179 bits (455), Expect = 2e-42
Identities = 83/217 (38%), Positives = 137/217 (63%), Gaps = 7/217 (3%)
Frame = -1
Query: 839 LSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN--SQGK 666
L +R++Y I+ + GIWT +KRETNL + K+LK L+ + +IK++ N S+G+
Sbjct: 23 LLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQVKKLIKEVVNIQSKGR 82
Query: 665 KVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSG 486
K +M E PS +LTGG +Y + LD E I I+K+ C++++++ K+AT E I++ + +G
Sbjct: 83 KHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVKVLSKLKVATAEGISESINKTG 142
Query: 485 ILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQI-----RAQET 321
+ + + +++ L++D+E+ EV S+G GEFSSIP+ CYR + +
Sbjct: 143 LCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCYRCTNKGGLGGGGPKI 202
Query: 320 SAFTNVPCGICPVLHECTEDGLISPKTCIYFNKWLSF 210
A ++PCG+CP + +CT DG+ISPK+C Y+ KWL F
Sbjct: 203 GAMASIPCGVCPRITQCTPDGIISPKSCAYYAKWLDF 239