BLASTX nr result
ID: Ephedra27_contig00023224
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00023224
(549 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi... 101 1e-19
ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela... 96 8e-18
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 91 1e-16
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 91 2e-16
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 91 2e-16
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 91 2e-16
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 90 4e-16
tpg|DAA37177.1| TPA: putative DNA-directed RNA polymerase family... 89 5e-16
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 89 9e-16
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor... 86 8e-15
ref|XP_004169121.1| PREDICTED: DNA-directed RNA polymerase III s... 84 2e-14
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 84 2e-14
gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 84 3e-14
gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Tri... 84 3e-14
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar... 83 5e-14
ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thali... 83 5e-14
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 83 5e-14
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 83 5e-14
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana... 83 5e-14
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 82 7e-14
>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
predicted protein [Physcomitrella patens]
Length = 1397
Score = 101 bits (251), Expect = 1e-19
Identities = 47/64 (73%), Positives = 56/64 (87%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKTTD LFDA++HG VD++EGVSECIIMGIP+P+GTGL KIRQ+V+ LPKL Y P
Sbjct: 1333 MLASFEKTTDHLFDAAIHGRVDKIEGVSECIIMGIPMPIGTGLFKIRQKVEKLPKLSYGP 1392
Query: 181 NLLI 192
L+
Sbjct: 1393 TPLL 1396
>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
gi|300146624|gb|EFJ13293.1| hypothetical protein
SELMODRAFT_446351 [Selaginella moellendorffii]
Length = 1393
Score = 95.5 bits (236), Expect = 8e-18
Identities = 45/60 (75%), Positives = 51/60 (85%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKTTD LF AS+HG DQ+EGVSECIIMGIP+PLGTGL K+RQ+V +PKL Y P
Sbjct: 1329 MLASFEKTTDHLFAASVHGRTDQIEGVSECIIMGIPMPLGTGLFKVRQKVGRIPKLIYGP 1388
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
italica]
Length = 1397
Score = 91.3 bits (225), Expect = 1e-16
Identities = 41/64 (64%), Positives = 56/64 (87%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKT++ LF+AS G D++EGVSECIIMGIP+ LGTG++K+RQR+DHLP+L+Y P
Sbjct: 1333 MLASFEKTSEHLFNASYSGREDEIEGVSECIIMGIPMQLGTGILKVRQRLDHLPELKYQP 1392
Query: 181 NLLI 192
+ ++
Sbjct: 1393 DPIL 1396
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 90.5 bits (223), Expect = 2e-16
Identities = 41/64 (64%), Positives = 54/64 (84%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKT + LF+AS G DQ+EGVSECIIMGIP+ LGTG++K+RQR+DHLP+ +Y P
Sbjct: 1325 MLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQP 1384
Query: 181 NLLI 192
+ ++
Sbjct: 1385 DPIL 1388
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 90.5 bits (223), Expect = 2e-16
Identities = 41/64 (64%), Positives = 54/64 (84%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKT + LF+AS G DQ+EGVSECIIMGIP+ LGTG++K+RQR+DHLP+ +Y P
Sbjct: 1257 MLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQP 1316
Query: 181 NLLI 192
+ ++
Sbjct: 1317 DPIL 1320
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 90.5 bits (223), Expect = 2e-16
Identities = 41/64 (64%), Positives = 54/64 (84%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKT + LF+AS G DQ+EGVSECIIMGIP+ LGTG++K+RQR+DHLP+ +Y P
Sbjct: 1319 MLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQP 1378
Query: 181 NLLI 192
+ ++
Sbjct: 1379 DPIL 1382
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 89.7 bits (221), Expect = 4e-16
Identities = 40/64 (62%), Positives = 55/64 (85%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKT++ LF+AS G DQ+EGVSECIIMGIP+ LGTG++K+RQR+DH+P+ +Y P
Sbjct: 1327 MLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHVPEFKYQP 1386
Query: 181 NLLI 192
+ ++
Sbjct: 1387 DPIL 1390
>tpg|DAA37177.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 336
Score = 89.4 bits (220), Expect = 5e-16
Identities = 40/64 (62%), Positives = 54/64 (84%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKT + LF+AS G DQ+EGVSECIIMGIP+ LGTG++K+RQR+DH+P+ +Y P
Sbjct: 272 MLASFEKTAEHLFNASYSGRQDQIEGVSECIIMGIPMQLGTGILKVRQRLDHVPEFKYQP 331
Query: 181 NLLI 192
+ ++
Sbjct: 332 DPIL 335
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 88.6 bits (218), Expect = 9e-16
Identities = 40/64 (62%), Positives = 53/64 (82%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKT + LF+AS G D++EGVSECIIMGIP+ LG+G++K+RQR+DHLP+ Y P
Sbjct: 1328 MLASFEKTLEHLFNASYSGREDEIEGVSECIIMGIPMTLGSGILKVRQRLDHLPEFNYQP 1387
Query: 181 NLLI 192
+ +I
Sbjct: 1388 DAII 1391
>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
Length = 1179
Score = 85.5 bits (210), Expect = 8e-15
Identities = 40/64 (62%), Positives = 52/64 (81%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKT D LF+AS++G D++EGVSECIIMGIP+ +GTG++K+RQRVD P L Y P
Sbjct: 1114 MLASFEKTADHLFNASVNGREDKIEGVSECIIMGIPMQIGTGMIKVRQRVDVPPMLSYGP 1173
Query: 181 NLLI 192
++
Sbjct: 1174 KPIL 1177
>ref|XP_004169121.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Cucumis sativus]
Length = 107
Score = 84.0 bits (206), Expect = 2e-14
Identities = 39/64 (60%), Positives = 52/64 (81%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKT D LF+AS++G D++EGVSEC+IMGIP+PLGTG++K+RQRV +L Y P
Sbjct: 43 MLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGMLKVRQRVSVPQQLPYGP 102
Query: 181 NLLI 192
++
Sbjct: 103 PAIL 106
>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
sativus]
Length = 1400
Score = 84.0 bits (206), Expect = 2e-14
Identities = 39/64 (60%), Positives = 52/64 (81%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKT D LF+AS++G D++EGVSEC+IMGIP+PLGTG++K+RQRV +L Y P
Sbjct: 1336 MLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGMLKVRQRVSVPQQLPYGP 1395
Query: 181 NLLI 192
++
Sbjct: 1396 PAIL 1399
>gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 1117
Score = 83.6 bits (205), Expect = 3e-14
Identities = 38/60 (63%), Positives = 51/60 (85%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKT++ LF+AS G DQ++GVSECIIMGIP+ LGTG++K+RQR++ LP+ +Y P
Sbjct: 1052 MLASFEKTSEHLFNASYAGREDQIDGVSECIIMGIPMQLGTGILKVRQRLESLPEFKYQP 1111
>gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Triticum urartu]
Length = 1248
Score = 83.6 bits (205), Expect = 3e-14
Identities = 38/60 (63%), Positives = 51/60 (85%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKT++ LF+AS G DQ++GVSECIIMGIP+ LGTG++K+RQR++ LP+ +Y P
Sbjct: 1183 MLASFEKTSEHLFNASYAGREDQIDGVSECIIMGIPMQLGTGILKVRQRLESLPEFKYQP 1242
>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
Length = 1383
Score = 82.8 bits (203), Expect = 5e-14
Identities = 38/64 (59%), Positives = 50/64 (78%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
M ASFE+T D LF A+ G VD +EGV+EC+IMGIP+ LGTG++K+ QR D LPKL+Y P
Sbjct: 1319 MQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGILKVLQRTDDLPKLKYGP 1378
Query: 181 NLLI 192
+ +I
Sbjct: 1379 DPII 1382
>ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
gi|332009887|gb|AED97270.1| nuclear RNA polymerase C1
[Arabidopsis thaliana]
Length = 1391
Score = 82.8 bits (203), Expect = 5e-14
Identities = 38/64 (59%), Positives = 50/64 (78%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
M ASFE+T D LF A+ G VD +EGV+EC+IMGIP+ LGTG++K+ QR D LPKL+Y P
Sbjct: 1327 MQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGILKVLQRTDDLPKLKYGP 1386
Query: 181 NLLI 192
+ +I
Sbjct: 1387 DPII 1390
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 82.8 bits (203), Expect = 5e-14
Identities = 39/64 (60%), Positives = 52/64 (81%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKT D LF+AS+ G D++EGVSECIIMGIP+ LGTG++K+RQR+ +P+L Y
Sbjct: 1755 MLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQQVPELSYGL 1814
Query: 181 NLLI 192
+ +I
Sbjct: 1815 DPII 1818
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 82.8 bits (203), Expect = 5e-14
Identities = 39/64 (60%), Positives = 52/64 (81%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKT D LF+AS+ G D++EGVSECIIMGIP+ LGTG++K+RQR+ +P+L Y
Sbjct: 1319 MLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQQVPELSYGL 1378
Query: 181 NLLI 192
+ +I
Sbjct: 1379 DPII 1382
>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1
[Arabidopsis thaliana]
Length = 1376
Score = 82.8 bits (203), Expect = 5e-14
Identities = 38/64 (59%), Positives = 50/64 (78%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
M ASFE+T D LF A+ G VD +EGV+EC+IMGIP+ LGTG++K+ QR D LPKL+Y P
Sbjct: 1312 MQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGILKVLQRTDDLPKLKYGP 1371
Query: 181 NLLI 192
+ +I
Sbjct: 1372 DPII 1375
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
lycopersicum]
Length = 1390
Score = 82.4 bits (202), Expect = 7e-14
Identities = 39/61 (63%), Positives = 53/61 (86%)
Frame = +1
Query: 1 MLASFEKTTDLLFDASLHGIVDQVEGVSECIIMGIPVPLGTGLMKIRQRVDHLPKLEYAP 180
MLASFEKTTD LF+AS++G D++EGV+ECIIMGIP+ +GTG+ K+RQRV+H+ +L Y P
Sbjct: 1326 MLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMFKLRQRVEHV-ELNYQP 1384
Query: 181 N 183
+
Sbjct: 1385 D 1385