BLASTX nr result
ID: Ephedra27_contig00022669
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00022669
(928 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 112 3e-22
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 104 5e-20
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 104 5e-20
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 101 5e-19
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 100 1e-18
gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indi... 94 1e-16
gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus no... 92 4e-16
sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 92 4e-16
gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japo... 92 4e-16
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 85 3e-14
gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial ... 83 1e-13
gb|EXB59778.1| NADP-dependent malic enzyme [Morus notabilis] 83 2e-13
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 82 4e-13
ref|XP_002310025.1| hypothetical protein POPTRDRAFT_562704 [Popu... 81 5e-13
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme... 80 8e-13
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 79 2e-12
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme... 79 2e-12
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 78 4e-12
ref|XP_004975068.1| PREDICTED: probable RNA-dependent RNA polyme... 76 2e-11
ref|XP_004975067.1| PREDICTED: probable RNA-dependent RNA polyme... 76 2e-11
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 112 bits (279), Expect = 3e-22
Identities = 82/277 (29%), Positives = 123/277 (44%), Gaps = 6/277 (2%)
Frame = +1
Query: 94 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 273
VEQM++ I + PP+ ++ L +LGE+ L +L K+S + IRNLSA I + +
Sbjct: 9 VEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLK--IRNLSALINYMV-- 64
Query: 274 LNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCIS 453
G + ++ PT ++ IS
Sbjct: 65 ----------------------------------------GKAAQGDAASHSPTPKHLIS 84
Query: 454 ------KNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGA 615
K RQ SS + +AL L F KAF+ L+Y+ ++LLS EI LK L MG
Sbjct: 85 SPSSTPKKARRQASSPQLVALGELEFRKAFLILSYIGDKRPEDLLSAEEILKLKNLPMGV 144
Query: 616 VEQLLRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKY 795
E + L +K ++ E D + +D + + YHC+V +G Y
Sbjct: 145 FETEVWNN----------LGRKFIKEE-------DRQRSFDWDSDKTHIYHCHVSPDGSY 187
Query: 796 TFKGPFTEQEKTHLHRVYGDSNVLRVHFAEELHDTKS 906
FKGP+ + +THL RV GD N+L V FAE++ D S
Sbjct: 188 RFKGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSS 224
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 104 bits (259), Expect = 5e-20
Identities = 77/273 (28%), Positives = 127/273 (46%), Gaps = 2/273 (0%)
Frame = +1
Query: 94 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 273
VEQ++ +I + PPD ++ L +LGED AL +L ++ + + S YI + +K
Sbjct: 19 VEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKY-SFSGYINYLVKK 77
Query: 274 LNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWEDESSCSTSMP--TSRNC 447
N+ V V +++P D +S + P + +
Sbjct: 78 RNNNGSPLKRVCFSPSSPQQNRSPV--TVTTVRLLNLPQDYVVKQSPVADQQPRGSPMSS 135
Query: 448 ISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQL 627
IS + S + +AL L F KAF+ L+Y+ ++ L+E+++ +EI ++ L M E
Sbjct: 136 ISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESE 195
Query: 628 LRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKG 807
+ +K +K S Q D+++ W D K + YHC++ G TFKG
Sbjct: 196 VWEKLGRKNIS--QEDRRMSLK-----W--DSGKTH--------MYHCHISTKGNCTFKG 238
Query: 808 PFTEQEKTHLHRVYGDSNVLRVHFAEELHDTKS 906
P+ Q +THL R GD N+L V F EEL +S
Sbjct: 239 PYLNQTRTHLQRELGDDNILLVKFDEELGGHRS 271
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 104 bits (259), Expect = 5e-20
Identities = 82/285 (28%), Positives = 124/285 (43%), Gaps = 14/285 (4%)
Frame = +1
Query: 94 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 273
VEQM++ I + PP+ ++ L +LGE+ L +L K+S + IRNLSA I + +
Sbjct: 9 VEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLK--IRNLSALINYMV-- 64
Query: 274 LNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCIS 453
G + ++ PT ++ IS
Sbjct: 65 ----------------------------------------GKAAQGDAASHSPTPKHLIS 84
Query: 454 ------KNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGA 615
K RQ SS + +AL L F KAF+ L+Y+ + ++LLS EI LK L MG
Sbjct: 85 SPSSTPKKARRQASSPQLVALGELEFRKAFLILSYIGELRPEDLLSAEEILKLKNLPMGV 144
Query: 616 VEQLLRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKY 795
E + L +K ++ E D + +D + + YHC+V +G Y
Sbjct: 145 FETEVWN----------NLGRKFIKEE-------DRQRSFDWDSDKTHIYHCHVSPDGSY 187
Query: 796 TFK--------GPFTEQEKTHLHRVYGDSNVLRVHFAEELHDTKS 906
FK GP+ + +THL RV GD N+L V FAE++ D S
Sbjct: 188 RFKVCISSSLNGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSS 232
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 101 bits (251), Expect = 5e-19
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 2/273 (0%)
Frame = +1
Query: 94 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 273
VEQ++ +I + PPD ++ L +LGED AL +L ++ + + S YI + +K
Sbjct: 19 VEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKY-SFSGYINYLVKK 77
Query: 274 LNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWEDESSCSTSMP--TSRNC 447
N+ V + ++ D +S + P + +
Sbjct: 78 RNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVADQQPRGSPMSS 137
Query: 448 ISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQL 627
IS + S + +AL L F KAF+ L+Y+ ++ L+E+++ +EI ++ L M E
Sbjct: 138 ISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESE 197
Query: 628 LRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKG 807
+ +K +K S Q D+++ W D K + YHC++ G TFKG
Sbjct: 198 VWEKLGRKNIS--QEDRRMSLK-----W--DSGKTH--------MYHCHISTKGNCTFKG 240
Query: 808 PFTEQEKTHLHRVYGDSNVLRVHFAEELHDTKS 906
P+ Q +THL R GD N+L V F EEL +S
Sbjct: 241 PYLNQTRTHLQRELGDDNILLVKFDEELGGHRS 273
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 100 bits (248), Expect = 1e-18
Identities = 78/272 (28%), Positives = 127/272 (46%), Gaps = 2/272 (0%)
Frame = +1
Query: 94 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 273
VE + +I +QP R ++ L ++GE A+++L +S + IR+ SA+I + +KN
Sbjct: 28 VEAKLGQICRYQSVQPASMRAREMLASIGESSAMNLLNWIS--TQKIRDFSAFIIYMVKN 85
Query: 274 LNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCIS 453
+N +V S + +D C+ ++ S
Sbjct: 86 MN-------------------------RPPDVLSST------DDVCECAPNLEPSSLMND 114
Query: 454 KNCERQPSSEKAM--ALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQL 627
C S+E AL L F KAF+ L Y+ + +D++LS+ +I + K LSM E
Sbjct: 115 FRCNTYGSNEFQFRKALGELEFRKAFLILNYIGKQRIDDVLSIEKIRTWKDLSMQCFEYE 174
Query: 628 LRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKG 807
+ + ++ S Q D++ L DW+ + ++Y C+VD G ++FKG
Sbjct: 175 VWRTVGERYAS--QTDRRNL------DWDSGKAENYQ----------CHVDPVGNFSFKG 216
Query: 808 PFTEQEKTHLHRVYGDSNVLRVHFAEELHDTK 903
PF E +THL RV GD VL V FAEE+ D +
Sbjct: 217 PFLESTQTHLRRVLGDDKVLTVKFAEEMVDER 248
>gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indica Group]
Length = 1155
Score = 93.6 bits (231), Expect = 1e-16
Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Frame = +1
Query: 430 PTSRNCISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSM 609
PT+ + N R+ +S + +AL+ L F K FM AYLA ++++ +LS++ I SLK LSM
Sbjct: 266 PTTTCHTTDNALREAASPQMLALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSM 325
Query: 610 GAVE-QLLRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVN 786
E Q+ R K ++ D K+ D +P + YHC V +
Sbjct: 326 VQFESQIWRTFGHKYIAAS------------------DRAKNLDSDPGMTKVYHCNVAIR 367
Query: 787 GKYT---FKGPFTEQEKTHLHRVYGDSNVLRVHFAEELHDTKS 906
G FKGP+ E +THLH+V GD NVL V F +L DTK+
Sbjct: 368 GDTVVKIFKGPYIENTRTHLHKVVGDDNVLVVKFMGKLSDTKT 410
>gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus notabilis]
Length = 529
Score = 91.7 bits (226), Expect = 4e-16
Identities = 74/266 (27%), Positives = 120/266 (45%), Gaps = 1/266 (0%)
Frame = +1
Query: 94 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 273
V ++++ I A+ PPD ++++L + GED AL +L ++ I++L ++ + ++
Sbjct: 22 VLELLERICAERSQPPPDAELRRKLASAGEDEALRVLRTIADCKTKIKSLHGFVTYLLRQ 81
Query: 274 LNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWEDESSCSTSMP-TSRNCI 450
S+S P+ E+S +S P T N
Sbjct: 82 ----------------------------QPPPPSLSSPSRSPVPENSRPSSSPGTFANSQ 113
Query: 451 SKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQLL 630
N + AL L F K F+ L Y+ ++EL + + EI SLK LSM E+ +
Sbjct: 114 GAN------GAQMEALGELEFRKQFLILNYIGRNELQSVTTAEEIRSLKNLSMVQFEKQV 167
Query: 631 RKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKGP 810
++ +K Q D+++ + DW D K + Y C+V G + FKGP
Sbjct: 168 WQRFGEKYVD--QEDRRI-----YHDW--DSGKTHI--------YRCHVSPEGSFRFKGP 210
Query: 811 FTEQEKTHLHRVYGDSNVLRVHFAEE 888
+ E+ K HL +V GD NVL V FAEE
Sbjct: 211 YLEKPKKHLQKVLGDDNVLMVKFAEE 236
>sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=OsRDR3
Length = 1153
Score = 91.7 bits (226), Expect = 4e-16
Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Frame = +1
Query: 430 PTSRNCISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSM 609
PT+ + N R+ +S + +AL+ L F K FM AYLA ++++ +LS++ I SLK LSM
Sbjct: 273 PTTTCHTTDNALREAASPQMLALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSM 332
Query: 610 GAVE-QLLRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVN 786
E Q+ R K ++ D K+ D +P + YHC V +
Sbjct: 333 AQFESQIWRTFGHKYIAAS------------------DRAKNLDSDPGMTKVYHCNVAIR 374
Query: 787 GKYT---FKGPFTEQEKTHLHRVYGDSNVLRVHFAEELHDTKS 906
G FKGP+ E +THL +V GD NVL V F +L DTK+
Sbjct: 375 GDTVVKIFKGPYIENTRTHLQKVVGDDNVLVVKFMGKLSDTKT 417
>gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japonica Group]
Length = 1243
Score = 91.7 bits (226), Expect = 4e-16
Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Frame = +1
Query: 430 PTSRNCISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSM 609
PT+ + N R+ +S + +AL+ L F K FM AYLA ++++ +LS++ I SLK LSM
Sbjct: 327 PTTTCHTTDNALREAASPQMLALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSM 386
Query: 610 GAVE-QLLRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVN 786
E Q+ R K ++ D K+ D +P + YHC V +
Sbjct: 387 AQFESQIWRTFGHKYIAAS------------------DRAKNLDSDPGMTKVYHCNVAIR 428
Query: 787 GKYT---FKGPFTEQEKTHLHRVYGDSNVLRVHFAEELHDTKS 906
G FKGP+ E +THL +V GD NVL V F +L DTK+
Sbjct: 429 GDTVVKIFKGPYIENTRTHLQKVVGDDNVLVVKFMGKLSDTKT 471
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
max]
Length = 988
Score = 85.1 bits (209), Expect = 3e-14
Identities = 67/266 (25%), Positives = 120/266 (45%), Gaps = 1/266 (0%)
Frame = +1
Query: 94 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 273
VE +++ I P D + L GE+++L IL K++ + + + + ++ + +
Sbjct: 17 VEALIESICRDQNRPPLDYSTRHRLKLQGEEQSLRILNKIAATRIRL-SFAGFVNHMLDD 75
Query: 274 LNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCIS 453
+N H N+N + + N+ + +S S P++R S
Sbjct: 76 IN-----------------------HQNNNNNNNNN--NNNNNNNNSHSQPEPSTRQQTS 110
Query: 454 KNCERQPSSEKAM-ALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQLL 630
+P+ + AL L F KAF+ L+Y+ ++ L+ ++ +I SLK L M E+ +
Sbjct: 111 PTRPPRPTPSSLLHALGELEFRKAFLILSYIGRESLENCITDAKIRSLKDLPMAKFEKTI 170
Query: 631 RKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKGP 810
+ +KC + Q D+++ +DWN Y C+V +G FKGP
Sbjct: 171 WEDFGEKCIYD-QSDRQL-----HRDWNSGRTH----------VYQCFVFPDGNLRFKGP 214
Query: 811 FTEQEKTHLHRVYGDSNVLRVHFAEE 888
+ +THL + GD NVL V FAE+
Sbjct: 215 ILQSTRTHLQKTLGDDNVLLVKFAED 240
>gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus
vulgaris]
Length = 689
Score = 83.2 bits (204), Expect = 1e-13
Identities = 76/264 (28%), Positives = 112/264 (42%)
Frame = +1
Query: 94 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 273
VE ++ I PPD ++Q L A+GE +AL IL +++ + I +LSA+I + +KN
Sbjct: 18 VEALINTICHDQNQLPPDFIIRQGLAAVGEQQALQILRTIAERPIRI-SLSAFIAYMLKN 76
Query: 274 LNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCIS 453
VTS S+ STS S
Sbjct: 77 ----------------------------HRTVTS-----------STPSTSSTPSTPLTP 97
Query: 454 KNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQLLR 633
+S AL + F KAF+ L+Y+ ++ L+ + S + I SLK L M E+ +
Sbjct: 98 SPTRPGQTSSALHALGEMEFRKAFLCLSYIGRESLENVASADCIRSLKDLPMATFEKTIW 157
Query: 634 KKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKGPF 813
+ K + Q D++V + DW+ Y CYV +G FKGP
Sbjct: 158 EAFGKDHIYS-QSDRQV-----YVDWDSGRTH----------VYQCYVSSDGSLRFKGPI 201
Query: 814 TEQEKTHLHRVYGDSNVLRVHFAE 885
+ +THL R GD NVL V FAE
Sbjct: 202 LQSTQTHLQRSLGDDNVLLVKFAE 225
>gb|EXB59778.1| NADP-dependent malic enzyme [Morus notabilis]
Length = 1017
Score = 82.8 bits (203), Expect = 2e-13
Identities = 70/267 (26%), Positives = 110/267 (41%), Gaps = 1/267 (0%)
Frame = +1
Query: 94 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 273
V++++ +I A P+ +++ L GE+ AL IL ++ + R+LS +I ++
Sbjct: 14 VDELIDKICADQSQAHPEAKLRWRLAQRGEEGALEILRTIATTKIK-RSLSGFIIHLLER 72
Query: 274 LNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCIS 453
+ V D V + P E S C+
Sbjct: 73 -SSSPRSTPPKRLRLSDSPTSGSGVSDKVITVQCYAPPKGATEAVS----------RCLF 121
Query: 454 KNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQLLR 633
+ AL L F K F+ L Y+ +EL +L EI +LK L M E
Sbjct: 122 LEAPTEGGEAVMAALGELEFRKQFLILNYIGSNELQTVLRAEEIRNLKGLQMVEFE---- 177
Query: 634 KKQRKKCGSNF-QLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKGP 810
+K + G + +V+ N DW+P+ YHC+V G++ FKGP
Sbjct: 178 RKLWDRFGVRYVDPQDRVVNN----DWDPERTH----------LYHCHVSTEGRFRFKGP 223
Query: 811 FTEQEKTHLHRVYGDSNVLRVHFAEEL 891
+ ++ KTHL R GD NVL V F EE+
Sbjct: 224 YLDKTKTHLQRELGDDNVLMVKFGEEI 250
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 81.6 bits (200), Expect = 4e-13
Identities = 75/277 (27%), Positives = 117/277 (42%), Gaps = 2/277 (0%)
Frame = +1
Query: 85 SERVEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVP-IRNLSAYIKW 261
S R+E + I +H + P + +Q L ++ E+ A ++ V + V I NL ++I
Sbjct: 20 SGRIEIALVNIYRQHNLTPINDETRQRLCSIPENLAFELVSDVLSLQVGVIYNLDSFIVS 79
Query: 262 AIKNLNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWEDESSCSTSMPTSR 441
+ H + +DE S + P+S+
Sbjct: 80 KVNQAVSVTGSQRLSSGGSSAQPRSPSGRH----------VCRVLDQDEMSVDSDAPSSK 129
Query: 442 NCISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVE 621
+ ++ + +AL L F KAF+ L+Y+ L E+++ EI K L M A E
Sbjct: 130 SLQREDVGGTLHIPQLVALGELEFKKAFLLLSYIPGQRLGEVVTAEEIRRWKDLPMVAYE 189
Query: 622 QLLRKKQ-RKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYT 798
+ RK C Q D++VL+ W D K + Y C+V +G YT
Sbjct: 190 AAVWDSLGRKFCP---QTDERVLQ------W--DSGKTH--------YYQCHVAPDGSYT 230
Query: 799 FKGPFTEQEKTHLHRVYGDSNVLRVHFAEELHDTKSY 909
FKGP E THLH+V GD NVL V FA ++ +Y
Sbjct: 231 FKGPLLESTGTHLHKVLGDENVLTVKFANVQKNSSTY 267
>ref|XP_002310025.1| hypothetical protein POPTRDRAFT_562704 [Populus trichocarpa]
Length = 305
Score = 81.3 bits (199), Expect = 5e-13
Identities = 69/293 (23%), Positives = 126/293 (43%), Gaps = 15/293 (5%)
Frame = +1
Query: 94 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 273
VE+++ +I + +P + + L +LGE+ AL+IL ++S + ++ ++ K
Sbjct: 16 VEELIAKICREQNRRPLETNTRLTLASLGEEVALNILWRISGQEIR-KSFDGFVLHLAKQ 74
Query: 274 LNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCIS 453
+ N + +T+ + + D + S +
Sbjct: 75 FSPNINASSSSPNIHSSLSPSPQQPQ-NRSPITTTRLLMNSQSDSGAQSPISLKLEGSST 133
Query: 454 KNCERQPSSEKA-----MALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAV 618
+ +RQ +E +AL L F KAF+ L+YL L+E++S+++I K L M
Sbjct: 134 MDSQRQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDLPM--- 190
Query: 619 EQLLRKKQRKKCGSNFQLDKKVLENEFW------KDWNPDEDK----DYDKNPNIFLQYH 768
+ E++ W +D+ +ED+ D+D YH
Sbjct: 191 --------------------RTFESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHI--YH 228
Query: 769 CYVDVNGKYTFKGPFTEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLE 927
C+VD +G Y FKGP+ +++ L R GD N+L V F EE+ D + S+L+
Sbjct: 229 CHVDPDGSYRFKGPYLSKQRNVLQRTLGDDNILMVKF-EEVKDERYSVSSSLD 280
>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
arietinum]
Length = 997
Score = 80.5 bits (197), Expect = 8e-13
Identities = 65/273 (23%), Positives = 116/273 (42%)
Frame = +1
Query: 94 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 273
VE ++ +I + P D +++ L LGE +AL IL +S + R+L+A+ + I
Sbjct: 12 VENLINQIREQQSQPPLDSSIRRNLAELGEQKALQILYYISTQPIK-RSLNAFTVYMINQ 70
Query: 274 LNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCIS 453
+ +++ S +S S S++ S
Sbjct: 71 HRSPPSPSRPSSSQSQSQSQSQSRPYSLQSQLLS--------HLQSRPSPLPLRSQSLPS 122
Query: 454 KNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQLLR 633
+ P S+ AL L F K+F+ ++Y ++ ++ +++ + SLK L+M E+ +
Sbjct: 123 SSTAPPPHSDVLTALGELEFRKSFLLMSYAGRENIENVVTAEYVRSLKELTMKNFEKEIW 182
Query: 634 KKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKGPF 813
+ +K ++ + + DW+ Y C+V NG FKGP
Sbjct: 183 ETVGQK------YIERPTDRLVYLDWDSGRTHIYQ----------CFVSPNGSLRFKGPI 226
Query: 814 TEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYT 912
+ +THL + GD NVL V FAE+ + KS T
Sbjct: 227 LQHTRTHLQKSLGDDNVLLVKFAEDQYARKSET 259
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 79.3 bits (194), Expect = 2e-12
Identities = 70/277 (25%), Positives = 119/277 (42%), Gaps = 1/277 (0%)
Frame = +1
Query: 85 SERVEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWA 264
S R+E ++ I K + P + +Q L ++ E+ + +RN+ +
Sbjct: 17 SGRIETALENIYRKFNLTPINDETRQRLSSIPENLGFEL----------VRNVFSLQAGL 66
Query: 265 IKNLNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRN 444
I NL+ V ++ S ++E S + P+ ++
Sbjct: 67 IYNLDSFIVSKVNQAVNFTGYPRLSSGVSPANSRSPSGRHVCRVLQEEMSVDSDAPSPKS 126
Query: 445 CISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQ 624
S+ + +AL L F KAF+ L+Y+ +L ++ + +EI K L M A E
Sbjct: 127 LKSEENGGSLHIPQLVALGELEFKKAFLLLSYIPGQQLGQVTTADEIRLWKDLPMVAYEA 186
Query: 625 LLRKKQ-RKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTF 801
+ + R+ C Q D+++L+ W D K + Y C+V +G YTF
Sbjct: 187 AVWDRLGRRYCP---QTDRRMLQ------W--DSGKTH--------YYQCHVAPDGSYTF 227
Query: 802 KGPFTEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYT 912
KGP E THLH+V GD NVL V FA+ ++ +Y+
Sbjct: 228 KGPLLEHTGTHLHKVLGDENVLTVKFADVPKNSSTYS 264
>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 759
Score = 79.0 bits (193), Expect = 2e-12
Identities = 75/307 (24%), Positives = 121/307 (39%), Gaps = 43/307 (14%)
Frame = +1
Query: 94 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKW-AIK 270
V+QM+ +I K PD V++ L A+GE+R+L IL ++SK + + LS +I + A K
Sbjct: 18 VQQMINQICKKERQNSPDDTVRRLLVAIGEERSLYILNEISKCQIK-KTLSGFIVFMAKK 76
Query: 271 NLNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWE---------------- 402
H S+S PN
Sbjct: 77 YYQSETQQFYQKQNHEQPVLSAESFYHSPQIRRNSLSSPNSSCSSVNFSPRNRPIFQDRD 136
Query: 403 ---DESSCSTSMP-------TSRNCISKNCERQPS-------------SEKAMALDNLAF 513
D S TS P + + C PS SE+ +AL+ L F
Sbjct: 137 IVGDTSDSPTSGPRIPSPPLSPVTTSFQKCHYDPSPSKFRDRASTRGISEQLLALNKLEF 196
Query: 514 PKAFMALAYLAQDELDELLSLNEINSLKML---SMGAVEQLLRKKQRKKCGSNFQLDKKV 684
K F+ L Y+ + +++++++L+++ + + M E + K C N ++
Sbjct: 197 RKFFLILNYIGRRKVEDVITLHDVGDILDMIYQPMSHFESYIWNKYGHLCEHNKRVQ--- 253
Query: 685 LENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKGPFTEQEKTHLHRVYGDSNV 864
+ DW+ YHC+V + YTFKGP+ + E+THL GD NV
Sbjct: 254 -----YLDWDSGRTH----------LYHCHVHSDRSYTFKGPYLKAERTHLQHSLGDENV 298
Query: 865 LRVHFAE 885
L V F +
Sbjct: 299 LIVKFEQ 305
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 78.2 bits (191), Expect = 4e-12
Identities = 73/275 (26%), Positives = 115/275 (41%), Gaps = 1/275 (0%)
Frame = +1
Query: 91 RVEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIK 270
R+E+++ I ++H P + +Q L ++ ED A +L K V + NL +I +
Sbjct: 26 RLERLLDRIYSQHKCSPINDESRQRLSSIPEDLAFELLRKAFNSPV-MYNLDGFI---VS 81
Query: 271 NLNDXXXXXXXXXXXXXXXXXXXXXVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCI 450
N +S + ++E S P+ +
Sbjct: 82 KFNQAVSVTGSPRLSSGGSPA-------KSPPSSSRKHGSRVHQEEMSLDFEAPSPESLR 134
Query: 451 SKNCERQPS-SEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQL 627
+ P + +AL L F KAF+ L+Y L E+LS +EI K L M A E
Sbjct: 135 RGDIGGSPHIPPQILALSELEFKKAFLLLSYFPGQSLAEVLSADEIRQWKDLPMVAYEAA 194
Query: 628 LRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKG 807
+ + S +L + V +W D +K + Y C+V +G YTFKG
Sbjct: 195 VWDRL-----SRLELSQTVERVSL--EW--DSEKTH--------YYQCHVASDGSYTFKG 237
Query: 808 PFTEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYT 912
P E THLH+V GD NVL V FA+ ++ +Y+
Sbjct: 238 PLLEPTGTHLHKVLGDENVLTVKFADVQKNSSTYS 272
>ref|XP_004975068.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like isoform X2
[Setaria italica]
Length = 1145
Score = 76.3 bits (186), Expect = 2e-11
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 5/143 (3%)
Frame = +1
Query: 466 RQPSSEKAMALDNLAFPKAFMALAYLAQDELDE--LLSLNEINSLKMLSMGAVEQLLRKK 639
R+ +S + AL++L F + F+ L+YL Q+ +++ +L+++ I SLK LS+ E + K
Sbjct: 289 RKTASPQMWALEDLEFCRRFLILSYLCQNNMEDEAVLTVDYIKSLKFLSIAHFESEIWSK 348
Query: 640 QRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGK---YTFKGP 810
+K NFQ + D K+ D +P+ YHC +++ G Y KGP
Sbjct: 349 FGRK---NFQASNRTAS---------DRPKNLDLDPSKTKVYHCNIEIRGDSVFYVLKGP 396
Query: 811 FTEQEKTHLHRVYGDSNVLRVHF 879
+ E ++T+L +V GD NVL V F
Sbjct: 397 YMENKRTYLQKVLGDDNVLVVKF 419
>ref|XP_004975067.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like isoform X1
[Setaria italica]
Length = 1150
Score = 76.3 bits (186), Expect = 2e-11
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 5/143 (3%)
Frame = +1
Query: 466 RQPSSEKAMALDNLAFPKAFMALAYLAQDELDE--LLSLNEINSLKMLSMGAVEQLLRKK 639
R+ +S + AL++L F + F+ L+YL Q+ +++ +L+++ I SLK LS+ E + K
Sbjct: 289 RKTASPQMWALEDLEFCRRFLILSYLCQNNMEDEAVLTVDYIKSLKFLSIAHFESEIWSK 348
Query: 640 QRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGK---YTFKGP 810
+K NFQ + D K+ D +P+ YHC +++ G Y KGP
Sbjct: 349 FGRK---NFQASNRTAS---------DRPKNLDLDPSKTKVYHCNIEIRGDSVFYVLKGP 396
Query: 811 FTEQEKTHLHRVYGDSNVLRVHF 879
+ E ++T+L +V GD NVL V F
Sbjct: 397 YMENKRTYLQKVLGDDNVLVVKF 419