BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00022668
         (507 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG51058.1|AC069473_20 rRNA biogenesis protein, putative, 3' ...    97   3e-18
dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis th...    97   3e-18
ref|NP_187803.4| protein ribosomal RNA processing 5 [Arabidopsis...    97   3e-18
gb|AAF23213.1|AC016795_26 putative pre-rRNA processing protein, ...    97   3e-18
ref|XP_004955773.1| PREDICTED: protein RRP5 homolog [Setaria ita...    94   1e-17
ref|XP_004166831.1| PREDICTED: protein RRP5 homolog, partial [Cu...    94   2e-17
ref|XP_004144698.1| PREDICTED: protein RRP5 homolog [Cucumis sat...    94   2e-17
ref|XP_006407387.1| hypothetical protein EUTSA_v10019877mg [Eutr...    93   3e-17
ref|XP_002459519.1| hypothetical protein SORBIDRAFT_02g006000 [S...    93   3e-17
ref|XP_004234751.1| PREDICTED: protein RRP5 homolog [Solanum lyc...    92   5e-17
dbj|BAC79783.2| putative pre-rRNA processing protein RRP5 [Oryza...    91   1e-16
ref|XP_002884876.1| S1 RNA-binding domain-containing protein [Ar...    91   1e-16
gb|EEE66766.1| hypothetical protein OsJ_23484 [Oryza sativa Japo...    91   1e-16
gb|EEC81702.1| hypothetical protein OsI_25303 [Oryza sativa Indi...    91   1e-16
ref|NP_001059139.1| Os07g0203300 [Oryza sativa Japonica Group] g...    91   1e-16
ref|XP_002322744.2| hypothetical protein POPTR_0016s06250g [Popu...    91   2e-16
gb|EOY09616.1| RNA binding,RNA binding isoform 3 [Theobroma cacao]     89   5e-16
gb|EOY09615.1| RNA binding,RNA binding isoform 2 [Theobroma cacao]     89   5e-16
gb|EOY09614.1| RNA binding,RNA binding isoform 1 [Theobroma cacao]     89   5e-16
ref|XP_003563778.1| PREDICTED: protein RRP5 homolog [Brachypodiu...    89   5e-16

>gb|AAG51058.1|AC069473_20 rRNA biogenesis protein, putative, 3' partial; 75505-85642
            [Arabidopsis thaliana]
          Length = 1396

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 52/145 (35%), Positives = 82/145 (56%)
 Frame = -3

Query: 436  LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRV 257
            + EG I+ GRI KI PG+ GL ++L     GRV F E+ D +  +P++ F++G  V+C+V
Sbjct: 1232 IHEGDILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKV 1291

Query: 256  LALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYV 77
            L + +SS     +ELSLR    G       +  + N D+V  +   I+D+ P M V+GYV
Sbjct: 1292 LEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNNDNVCKRFERIEDLSPDMGVQGYV 1351

Query: 76   KGFFQNLLYVMLSANLDATVDIDNL 2
            K       +++LS  ++A V + NL
Sbjct: 1352 KNTMSKGCFIILSRTVEAKVRLSNL 1376


>dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis thaliana]
          Length = 1765

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 52/145 (35%), Positives = 82/145 (56%)
 Frame = -3

Query: 436  LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRV 257
            + EG I+ GRI KI PG+ GL ++L     GRV F E+ D +  +P++ F++G  V+C+V
Sbjct: 1102 IHEGDILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKV 1161

Query: 256  LALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYV 77
            L + +SS     +ELSLR    G       +  + N D+V  +   I+D+ P M V+GYV
Sbjct: 1162 LEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNNDNVCKRFERIEDLSPDMGVQGYV 1221

Query: 76   KGFFQNLLYVMLSANLDATVDIDNL 2
            K       +++LS  ++A V + NL
Sbjct: 1222 KNTMSKGCFIILSRTVEAKVRLSNL 1246


>ref|NP_187803.4| protein ribosomal RNA processing 5 [Arabidopsis thaliana]
            gi|332641610|gb|AEE75131.1| protein ribosomal RNA
            processing 5 [Arabidopsis thaliana]
          Length = 1896

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 52/145 (35%), Positives = 82/145 (56%)
 Frame = -3

Query: 436  LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRV 257
            + EG I+ GRI KI PG+ GL ++L     GRV F E+ D +  +P++ F++G  V+C+V
Sbjct: 1233 IHEGDILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKV 1292

Query: 256  LALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYV 77
            L + +SS     +ELSLR    G       +  + N D+V  +   I+D+ P M V+GYV
Sbjct: 1293 LEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNNDNVCKRFERIEDLSPDMGVQGYV 1352

Query: 76   KGFFQNLLYVMLSANLDATVDIDNL 2
            K       +++LS  ++A V + NL
Sbjct: 1353 KNTMSKGCFIILSRTVEAKVRLSNL 1377


>gb|AAF23213.1|AC016795_26 putative pre-rRNA processing protein, 5' partial [Arabidopsis
           thaliana]
          Length = 1111

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 52/145 (35%), Positives = 82/145 (56%)
 Frame = -3

Query: 436 LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRV 257
           + EG I+ GRI KI PG+ GL ++L     GRV F E+ D +  +P++ F++G  V+C+V
Sbjct: 448 IHEGDILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKV 507

Query: 256 LALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYV 77
           L + +SS     +ELSLR    G       +  + N D+V  +   I+D+ P M V+GYV
Sbjct: 508 LEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNNDNVCKRFERIEDLSPDMGVQGYV 567

Query: 76  KGFFQNLLYVMLSANLDATVDIDNL 2
           K       +++LS  ++A V + NL
Sbjct: 568 KNTMSKGCFIILSRTVEAKVRLSNL 592


>ref|XP_004955773.1| PREDICTED: protein RRP5 homolog [Setaria italica]
          Length = 1904

 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 3/169 (1%)
 Frame = -3

Query: 499  NMDKILEPQVVPGKLDGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELT 320
            N+DKI + +         V++ K+G ++ GR++KI PG+ GLV+++     GRV + E+ 
Sbjct: 1234 NIDKIQQSE------SSLVEQTKQGDVIGGRVQKILPGVGGLVVQIGPHLHGRVHYTEIV 1287

Query: 319  DDFPENPVERFKKGSIVRCRVLALQNSSSTENLVELSLRKLRKGHGEVTEK---NGAICN 149
            D +  +P+  F +G  V+C+VL++  SS     V+LSLR           +    GA C 
Sbjct: 1288 DSWVADPLSGFHEGQFVKCKVLSVSRSSEGSLRVDLSLRSSNIRTDSSNSRLFDEGATC- 1346

Query: 148  YDSVSAQVYGIDDIVPGMLVKGYVKGFFQNLLYVMLSANLDATVDIDNL 2
                  ++  I+D++PG  +KGYVK       ++MLS  ++A + + NL
Sbjct: 1347 ----IPRIEKIEDLLPGTEIKGYVKNVNPKGCFIMLSRMVEARITLSNL 1391


>ref|XP_004166831.1| PREDICTED: protein RRP5 homolog, partial [Cucumis sativus]
          Length = 1323

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 51/145 (35%), Positives = 84/145 (57%)
 Frame = -3

Query: 436  LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRV 257
            L EG IV GRI KI PG+ GL++++     GRV + ELTD    +P+  +K+G  V+C+V
Sbjct: 657  LNEGDIVGGRISKILPGVGGLLVQIGPHLFGRVHYTELTDCLVPDPLSGYKEGQFVKCKV 716

Query: 256  LALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYV 77
            + + ++      ++LS   LR   G + +KN    N++++++    I+DI   M V+GYV
Sbjct: 717  IEITHAVKGTTHIDLS---LRSSAGILCQKNIECSNHENIASGRVKIEDIHAHMEVQGYV 773

Query: 76   KGFFQNLLYVMLSANLDATVDIDNL 2
            K       ++MLS  L+A + + NL
Sbjct: 774  KNISPKGCFIMLSRGLEAKILLSNL 798


>ref|XP_004144698.1| PREDICTED: protein RRP5 homolog [Cucumis sativus]
          Length = 1898

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 51/145 (35%), Positives = 84/145 (57%)
 Frame = -3

Query: 436  LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRV 257
            L EG IV GRI KI PG+ GL++++     GRV + ELTD    +P+  +K+G  V+C+V
Sbjct: 1232 LNEGDIVGGRISKILPGVGGLLVQIGPHLFGRVHYTELTDCLVPDPLSGYKEGQFVKCKV 1291

Query: 256  LALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYV 77
            + + ++      ++LS   LR   G + +KN    N++++++    I+DI   M V+GYV
Sbjct: 1292 IEITHAVKGTTHIDLS---LRSSAGILCQKNIECSNHENIASGRVKIEDIHAHMEVQGYV 1348

Query: 76   KGFFQNLLYVMLSANLDATVDIDNL 2
            K       ++MLS  L+A + + NL
Sbjct: 1349 KNISPKGCFIMLSRGLEAKILLSNL 1373


>ref|XP_006407387.1| hypothetical protein EUTSA_v10019877mg [Eutrema salsugineum]
            gi|557108533|gb|ESQ48840.1| hypothetical protein
            EUTSA_v10019877mg [Eutrema salsugineum]
          Length = 1926

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 58/156 (37%), Positives = 84/156 (53%)
 Frame = -3

Query: 469  VPGKLDGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVER 290
            +PG  D A   + EG I+ GRI +I P + GL +++     GRV F EL D +  NP++ 
Sbjct: 1248 IPG--DDATLFIHEGDILGGRISRILPCVGGLRVQIGPYVFGRVHFTELNDSWVCNPLDG 1305

Query: 289  FKKGSIVRCRVLALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDD 110
              +G  V+C+VL + NSS     +ELSLR    G G       A  N  +V  ++  I+D
Sbjct: 1306 LHEGQFVKCKVLEISNSSKGTLQIELSLRASLDGMGS-NHLAEASSNNVNVCKRIERIED 1364

Query: 109  IVPGMLVKGYVKGFFQNLLYVMLSANLDATVDIDNL 2
            + P M ++GYVK       ++MLS  LDA V + NL
Sbjct: 1365 LSPDMGIQGYVKNTMSKGCFIMLSRTLDAKVLLSNL 1400


>ref|XP_002459519.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]
            gi|241922896|gb|EER96040.1| hypothetical protein
            SORBIDRAFT_02g006000 [Sorghum bicolor]
          Length = 1862

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 46/147 (31%), Positives = 85/147 (57%)
 Frame = -3

Query: 442  DELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRC 263
            ++ K+G I+ GR++KI PG+ GLV+++     GRV + E+ D +   P+  F +G  V+C
Sbjct: 1200 EQTKQGDIIGGRVQKILPGVGGLVVQIGPHLRGRVHYTEIVDSWVTEPLSGFHEGQFVKC 1259

Query: 262  RVLALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKG 83
            +VL++  SS     V+LSLR         +  +G + +  + ++++  I D++PG  +KG
Sbjct: 1260 KVLSVSRSSEGSLRVDLSLRSSNLIRD--SNNSGLVDDLATCTSRIEKIKDLLPGTEIKG 1317

Query: 82   YVKGFFQNLLYVMLSANLDATVDIDNL 2
            YVK       ++M+S  ++A + + NL
Sbjct: 1318 YVKNVNSKGCFIMISRMVEARITLSNL 1344


>ref|XP_004234751.1| PREDICTED: protein RRP5 homolog [Solanum lycopersicum]
          Length = 1869

 Score = 92.4 bits (228), Expect = 5e-17
 Identities = 52/145 (35%), Positives = 82/145 (56%)
 Frame = -3

Query: 436  LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRV 257
            ++EGS++ GRI KI PG+ GL++++D    G+V F ELTD    +P+  + +G  V+C+V
Sbjct: 1199 IREGSVLGGRISKILPGVGGLLVQIDPHLYGKVHFTELTDPGVADPLSGYHEGQFVKCKV 1258

Query: 256  LALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYV 77
            L +  S      ++LSLR +   H    EK  A  +  +    V  I+D+ P M+V+ YV
Sbjct: 1259 LEIAQSGKGTVHIDLSLRSI--SHKTQKEKLSAHNDTVNFPVLVEKIEDLRPNMMVQAYV 1316

Query: 76   KGFFQNLLYVMLSANLDATVDIDNL 2
            K       +V+LS  +DA V + NL
Sbjct: 1317 KNVSPKGCFVILSRKVDAKVLLSNL 1341


>dbj|BAC79783.2| putative pre-rRNA processing protein RRP5 [Oryza sativa Japonica
            Group] gi|50508626|dbj|BAD31015.1| putative pre-rRNA
            processing protein RRP5 [Oryza sativa Japonica Group]
          Length = 1668

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 50/152 (32%), Positives = 83/152 (54%)
 Frame = -3

Query: 457  LDGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKG 278
            L   V+  K+G I+ GRI+KI PG+ GLVI++     GRV + E+ D + + P+  F +G
Sbjct: 1009 LSATVEHTKQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVDSWVQEPISGFHEG 1068

Query: 277  SIVRCRVLALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPG 98
              V+C+VL +  SS     V+LSLR     +   + +     +    +++   I+D+ PG
Sbjct: 1069 QFVKCKVLDVSRSSEGSVRVDLSLRSSMCANSNQSRR--LFDDSRIRTSRFEKINDLCPG 1126

Query: 97   MLVKGYVKGFFQNLLYVMLSANLDATVDIDNL 2
              VKGYVK       ++M+S  ++A + + NL
Sbjct: 1127 TEVKGYVKSVNSKGCFIMVSRTIEARIILSNL 1158


>ref|XP_002884876.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
            lyrata] gi|297330716|gb|EFH61135.1| S1 RNA-binding
            domain-containing protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1843

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 54/156 (34%), Positives = 86/156 (55%)
 Frame = -3

Query: 469  VPGKLDGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVER 290
            +PG  DG +  + EG I+ GRI KI PG+ GL +++     GRV F E+ D +  NP++ 
Sbjct: 1164 IPGD-DGTLF-IHEGDILGGRISKILPGVGGLRVQIGPYVFGRVHFTEINDLWVPNPLDG 1221

Query: 289  FKKGSIVRCRVLALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDD 110
            F++G  V+C+VL + +SS     +ELSLR    G       +  + N D+V  +    +D
Sbjct: 1222 FREGQFVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHISEDLNNNDNVCKRFERFED 1281

Query: 109  IVPGMLVKGYVKGFFQNLLYVMLSANLDATVDIDNL 2
            +   M V+GYVK       +++LS  ++A V + NL
Sbjct: 1282 LSLDMGVQGYVKNTMSKGCFIILSRKVEAKVKLSNL 1317


>gb|EEE66766.1| hypothetical protein OsJ_23484 [Oryza sativa Japonica Group]
          Length = 1898

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 50/152 (32%), Positives = 83/152 (54%)
 Frame = -3

Query: 457  LDGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKG 278
            L   V+  K+G I+ GRI+KI PG+ GLVI++     GRV + E+ D + + P+  F +G
Sbjct: 1246 LSATVEHTKQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVDSWVQEPISGFHEG 1305

Query: 277  SIVRCRVLALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPG 98
              V+C+VL +  SS     V+LSLR     +   + +     +    +++   I+D+ PG
Sbjct: 1306 QFVKCKVLDVSRSSEGSVRVDLSLRSSMCANSNQSRR--LFDDSRIRTSRFEKINDLCPG 1363

Query: 97   MLVKGYVKGFFQNLLYVMLSANLDATVDIDNL 2
              VKGYVK       ++M+S  ++A + + NL
Sbjct: 1364 TEVKGYVKSVNSKGCFIMVSRTIEARIILSNL 1395


>gb|EEC81702.1| hypothetical protein OsI_25303 [Oryza sativa Indica Group]
          Length = 1848

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 50/152 (32%), Positives = 83/152 (54%)
 Frame = -3

Query: 457  LDGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKG 278
            L   V+  K+G I+ GRI+KI PG+ GLVI++     GRV + E+ D + + P+  F +G
Sbjct: 1224 LSATVEHTKQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVDSWVQEPISGFHEG 1283

Query: 277  SIVRCRVLALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPG 98
              V+C+VL +  SS     V+LSLR     +   + +     +    +++   I+D+ PG
Sbjct: 1284 QFVKCKVLDVSRSSEGSVRVDLSLRSSMCANSNQSRR--LFDDSRIRTSRFEKINDLCPG 1341

Query: 97   MLVKGYVKGFFQNLLYVMLSANLDATVDIDNL 2
              VKGYVK       ++M+S  ++A + + NL
Sbjct: 1342 TEVKGYVKSVNSKGCFIMVSRTIEARIILSNL 1373


>ref|NP_001059139.1| Os07g0203300 [Oryza sativa Japonica Group]
           gi|113610675|dbj|BAF21053.1| Os07g0203300, partial
           [Oryza sativa Japonica Group]
          Length = 689

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 50/152 (32%), Positives = 83/152 (54%)
 Frame = -3

Query: 457 LDGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKG 278
           L   V+  K+G I+ GRI+KI PG+ GLVI++     GRV + E+ D + + P+  F +G
Sbjct: 30  LSATVEHTKQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVDSWVQEPISGFHEG 89

Query: 277 SIVRCRVLALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPG 98
             V+C+VL +  SS     V+LSLR     +   + +     +    +++   I+D+ PG
Sbjct: 90  QFVKCKVLDVSRSSEGSVRVDLSLRSSMCANSNQSRR--LFDDSRIRTSRFEKINDLCPG 147

Query: 97  MLVKGYVKGFFQNLLYVMLSANLDATVDIDNL 2
             VKGYVK       ++M+S  ++A + + NL
Sbjct: 148 TEVKGYVKSVNSKGCFIMVSRTIEARIILSNL 179


>ref|XP_002322744.2| hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
            gi|550320958|gb|EEF04505.2| hypothetical protein
            POPTR_0016s06250g [Populus trichocarpa]
          Length = 1856

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
 Frame = -3

Query: 454  DGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGS 275
            D     ++EG IV GRI KI PG+ GL+++L     GRV F EL D +  +P+  +K+G 
Sbjct: 1184 DNVTAHIREGDIVGGRISKILPGVGGLLVQLGPHIHGRVHFTELQDSWVPDPLSAYKEGQ 1243

Query: 274  IVRCRVLALQNSSSTENLVELSLRKLRKGHGEVTEKNGA--ICNYDSVSAQVYGIDDIVP 101
             V+ +VL + +       ++LSLR    G   +  +N A    N D+ S  V  I+D+ P
Sbjct: 1244 FVKSKVLEISHPVKGTIHIDLSLRLSLNG---MLGQNSAEFSNNQDAPSKHVDKIEDLQP 1300

Query: 100  GMLVKGYVKGFFQNLLYVMLSANLDATVDIDNL 2
             M+V+GYVK       ++ LS  LDA + + NL
Sbjct: 1301 DMVVQGYVKNVSSKGCFISLSRKLDAKILLSNL 1333


>gb|EOY09616.1| RNA binding,RNA binding isoform 3 [Theobroma cacao]
          Length = 1356

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 50/151 (33%), Positives = 81/151 (53%)
 Frame = -3

Query: 454  DGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGS 275
            +     + EG I+ GRI KI PG+ GL++++     GRV F EL D +  +P+  + +G 
Sbjct: 1155 ESVTTHIHEGDILGGRISKILPGVGGLLVQIGPHIFGRVHFTELKDTWESDPLSGYYEGQ 1214

Query: 274  IVRCRVLALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGM 95
             V+C+VL + +S      ++LSLR    G       +    + DS S +V  I+D+ P M
Sbjct: 1215 FVKCKVLEISHSVKGTIHIDLSLRLSLDGM-LPNNPSELGSDEDSTSKRVEKIEDLYPNM 1273

Query: 94   LVKGYVKGFFQNLLYVMLSANLDATVDIDNL 2
             ++GYVK       +++LS  LDA + + NL
Sbjct: 1274 AIQGYVKNTIPKGCFILLSRKLDAKILLSNL 1304


>gb|EOY09615.1| RNA binding,RNA binding isoform 2 [Theobroma cacao]
          Length = 1790

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 50/151 (33%), Positives = 81/151 (53%)
 Frame = -3

Query: 454  DGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGS 275
            +     + EG I+ GRI KI PG+ GL++++     GRV F EL D +  +P+  + +G 
Sbjct: 1155 ESVTTHIHEGDILGGRISKILPGVGGLLVQIGPHIFGRVHFTELKDTWESDPLSGYYEGQ 1214

Query: 274  IVRCRVLALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGM 95
             V+C+VL + +S      ++LSLR    G       +    + DS S +V  I+D+ P M
Sbjct: 1215 FVKCKVLEISHSVKGTIHIDLSLRLSLDGM-LPNNPSELGSDEDSTSKRVEKIEDLYPNM 1273

Query: 94   LVKGYVKGFFQNLLYVMLSANLDATVDIDNL 2
             ++GYVK       +++LS  LDA + + NL
Sbjct: 1274 AIQGYVKNTIPKGCFILLSRKLDAKILLSNL 1304


>gb|EOY09614.1| RNA binding,RNA binding isoform 1 [Theobroma cacao]
          Length = 1824

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 50/151 (33%), Positives = 81/151 (53%)
 Frame = -3

Query: 454  DGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGS 275
            +     + EG I+ GRI KI PG+ GL++++     GRV F EL D +  +P+  + +G 
Sbjct: 1155 ESVTTHIHEGDILGGRISKILPGVGGLLVQIGPHIFGRVHFTELKDTWESDPLSGYYEGQ 1214

Query: 274  IVRCRVLALQNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGM 95
             V+C+VL + +S      ++LSLR    G       +    + DS S +V  I+D+ P M
Sbjct: 1215 FVKCKVLEISHSVKGTIHIDLSLRLSLDGM-LPNNPSELGSDEDSTSKRVEKIEDLYPNM 1273

Query: 94   LVKGYVKGFFQNLLYVMLSANLDATVDIDNL 2
             ++GYVK       +++LS  LDA + + NL
Sbjct: 1274 AIQGYVKNTIPKGCFILLSRKLDAKILLSNL 1304


>ref|XP_003563778.1| PREDICTED: protein RRP5 homolog [Brachypodium distachyon]
          Length = 1668

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
 Frame = -3

Query: 502  ENMDKILEPQVVPGKLDGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAEL 323
            +N+D   +P      +    +  KEG I+ GRI+KI PG+ GL+I++     GRV + E+
Sbjct: 998  KNIDDTQKP------ISSIAEHTKEGDIIGGRIQKILPGVGGLLIQIGPHLHGRVHYTEI 1051

Query: 322  TDDFPENPVERFKKGSIVRCRVLALQNSSSTENLVELSLRK--LRKGHGEVTE--KNGAI 155
             D +   P+  F +G  V+C+VLA+   S     VELSLR   L   H    +   + A 
Sbjct: 1052 VDSWVPEPLSGFHEGQFVKCKVLAVSRPSEGSVRVELSLRSSILCTSHDPSRKLVDDSAT 1111

Query: 154  CNYDSVSAQVYGIDDIVPGMLVKGYVKGFFQNLLYVMLSANLDATVDIDNL 2
            C     + +   ++D+ PG  VKGYVK       ++MLS  ++A + + NL
Sbjct: 1112 C-----TTRFENVNDLSPGSEVKGYVKNVNAKGCFIMLSRMIEARIILSNL 1157