BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00021542
         (887 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBN77513.1| conserved unknown protein [Ectocarpus siliculosus]     62   3e-07
ref|XP_002781579.1| hypothetical protein Pmar_PMAR009324 [Perkin...    60   1e-06
ref|XP_004335370.1| ribosomal RNA large subunit methyltransferas...    59   2e-06
ref|XP_002773145.1| hypothetical protein Pmar_PMAR026973 [Perkin...    58   4e-06

>emb|CBN77513.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 463

 Score = 62.0 bits (149), Expect = 3e-07
 Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
 Frame = -3

Query: 318 FTHSIYVVEADGNFLYGLDEGSNMYLAPSNRVSLSKGVSKASTKIEEALCVANFDLHKDM 139
           FTH + +V A G FL+GL + +    +  +  +    V +A  KI+E    A+    +D 
Sbjct: 90  FTHVLSLVFARGAFLWGLAQAATHGRSIIDNNNEDTAVCRAYYKIKEVTSRADLSFGEDW 149

Query: 138 LVLDVGAAPGAWTEYVSHNVKAVLAIDPGRLCDQA--QQKNVIHICK 4
             +D+GAAPG WT +++   + VL++DP  L D A     NV+H+ K
Sbjct: 150 TAIDIGAAPGGWTSFLASKCRRVLSVDPAEL-DSAVLALPNVVHVQK 195


>ref|XP_002781579.1| hypothetical protein Pmar_PMAR009324 [Perkinsus marinus ATCC 50983]
           gi|239892429|gb|EER13374.1| hypothetical protein
           Pmar_PMAR009324 [Perkinsus marinus ATCC 50983]
          Length = 301

 Score = 60.1 bits (144), Expect = 1e-06
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
 Frame = -3

Query: 396 RIQTHPRELADDLVHELGDFDCVLHDFTHSIYVVEADGNFLYGLDEGSNMY---LAPSNR 226
           R+QT P      +   L +  C   D+TH   VV  DG +L G+ +    Y   +  ++ 
Sbjct: 58  RLQTFPSRYQKTIADYLPEGMCHPRDYTHVAQVVYIDGLYLLGICQPEECYIGNIVETSN 117

Query: 225 VSLSKGVSKASTKIEEALCVANFDL---HKDMLVLDVGAAPGAWTEYV-SHNVKAVLAID 58
             L+  V KA  K+ EA     F+      +M  +DVGA+PG W+ Y+ +  V  ++A+D
Sbjct: 118 GRLTDSVCKAEYKLAEAFRRFGFEFGEKRDEMTAIDVGASPGGWSRYLYNEGVGRIIAVD 177

Query: 57  PGRL-CDQAQQK 25
            G + C ++  K
Sbjct: 178 KGEVDCSKSDGK 189


>ref|XP_004335370.1| ribosomal RNA large subunit methyltransferase J, putative
           [Acanthamoeba castellanii str. Neff]
           gi|440792129|gb|ELR13357.1| ribosomal RNA large subunit
           methyltransferase J, putative [Acanthamoeba castellanii
           str. Neff]
          Length = 424

 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
 Frame = -3

Query: 444 DLDHVSDNY-----SRKSFRFRIQTHPRELADDLVHELGDFDCVLH--DFTHSIYVVEAD 286
           DLD + D       + K+   R+   P+   + +V+ L   +  LH   FTH + +    
Sbjct: 166 DLDFLQDIAHDAIRTNKARVLRLCVFPKSRTEAVVNAL-PAEVQLHPKQFTHVLSIARER 224

Query: 285 GNFLYGLDEGSNMYLAPSN---RVSLSKGVSKASTKIEEAL----CVANFDLHKDMLVLD 127
           G + YGL     ++  P +    V + K VS+A  K++E      C+   D  +    +D
Sbjct: 225 GRYYYGLAP-KELFWGPESGVHSVQMDK-VSRAYHKMKEVFTRIDCLRLADTAQ-WTAID 281

Query: 126 VGAAPGAWTEYVSHNVKAVLAIDPGRLCDQAQQKNVIHICKK 1
           VGAAPG WT+Y+S  +K V++IDPG L  +    NV+H+ KK
Sbjct: 282 VGAAPGGWTQYLSPLMKQVISIDPGELRIEL-PPNVVHLKKK 322


>ref|XP_002773145.1| hypothetical protein Pmar_PMAR026973 [Perkinsus marinus ATCC 50983]
           gi|239878106|gb|EER04961.1| hypothetical protein
           Pmar_PMAR026973 [Perkinsus marinus ATCC 50983]
          Length = 473

 Score = 58.2 bits (139), Expect = 4e-06
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
 Frame = -3

Query: 396 RIQTHPRELADDLVHELGDFDCVLHDFTHSIYVVEADGNFLYGLDEGSNMY---LAPSNR 226
           R+QT P      +   L +  C   D+TH   VV  DG +L G+ +    Y   +  ++ 
Sbjct: 230 RLQTFPSRYQKIIADYLPEGMCHPRDYTHVAQVVYIDGLYLLGICQPEECYIGNIVETSN 289

Query: 225 VSLSKGVSKASTKIEEALCVANFDL---HKDMLVLDVGAAPGAWTEYV-SHNVKAVLAID 58
             L+  V KA  K+ EA     ++      +M  +DVGA+PG W+ Y+ +  V  ++A+D
Sbjct: 290 GRLTDSVCKAEYKLAEAFRRFGYEFGEKRDEMTAIDVGASPGGWSRYLYNEGVGRIIAVD 349

Query: 57  PGRL-CDQAQQK 25
            G + C ++  K
Sbjct: 350 KGEVDCSKSDGK 361