BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00021033
         (1867 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty...   175   5e-41
emb|CAN74302.1| hypothetical protein VITISV_031363 [Vitis vinifera]   163   2e-37
gb|AAO73529.1| gag-pol polyprotein [Glycine max]                      159   4e-36
gb|AAC64917.1| gag-pol polyprotein [Glycine max]                      154   1e-34
gb|AAO73525.1| gag-pol polyprotein [Glycine max]                      153   2e-34
gb|AAO73523.1| gag-pol polyprotein [Glycine max]                      153   2e-34
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]             152   4e-34
gb|AAO73527.1| gag-pol polyprotein [Glycine max]                      152   4e-34
emb|CAN65575.1| hypothetical protein VITISV_001033 [Vitis vinifera]   147   1e-32
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi...   139   3e-30
gb|ABM55238.1| integrase [Beta vulgaris]                              139   5e-30
gb|ABH08430.1| putative integrase [Beta vulgaris]                     139   5e-30
gb|AAO37957.1| putative gag-pol polyprotein [Oryza sativa Japoni...   138   7e-30
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s...   138   9e-30
emb|CAE03600.2| OSJNBb0004A17.2 [Oryza sativa Japonica Group]         137   2e-29
gb|ABF94836.1| retrotransposon protein, putative, unclassified [...   137   2e-29
gb|ABF93543.1| retrotransposon protein, putative, unclassified [...   137   2e-29
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]                135   8e-29
emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]   132   7e-28
ref|XP_004243132.1| PREDICTED: uncharacterized protein LOC101257...   129   4e-27

>gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase
            aspartic, catalytic [Medicago truncatula]
          Length = 1715

 Score =  175 bits (444), Expect = 5e-41
 Identities = 132/432 (30%), Positives = 207/432 (47%), Gaps = 36/432 (8%)
 Frame = -2

Query: 1218 RSKQGESSFMTTQKYIKNTKKVWKEKDACLLTEYMLNTSTFSNYWILDSGCTTHMTGNRK 1039
            ++K   +S  T  K +K  K +  +K   +  +  L        W LDSGC+ HMTG + 
Sbjct: 627  KNKAATASEKTIPKGVK-PKVLNDQKPLSIHPKVCLRAREKQRSWYLDSGCSRHMTGEKA 685

Query: 1038 LIKNITAYDGG-V*FGNNETCKEI*KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDN 862
            L   +T  DGG V FG N+T K I  G   I     S   V LV  + +NLL I+  CDN
Sbjct: 686  LFLTLTMKDGGEVKFGGNQTGKIIGTG--TIGNSSISINNVWLVDGLKHNLLSISQFCDN 743

Query: 861  GLEVRFQRNLCYIFDNEENSIT-AGKRMENLYILN-------EDTCLLRNIENTSI*HKI 706
            G +V F +  C + + ++ SIT  GKR+EN+Y +N       +  CLL   +   + HK 
Sbjct: 744  GYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKR 803

Query: 705  LGQIHYSNI*NLVKYNAVRSLPSNKFSTQSCQTTNKQGHLLKK--KNIQAMES*TLYILI 532
            LG  ++  I  + K   V+ LP+  + + +     ++G ++K   K+   + +     L+
Sbjct: 804  LGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELL 863

Query: 531  FVD---Q*EL*ALEGTKFSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKF 361
             +D        +L G+K+   +    +    ++ +K K Y            ++E   K 
Sbjct: 864  HIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKI 923

Query: 360  KCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSE 181
              VR D GGEF +  F+ FCE HGI H+FS+ R PQ N ++ RKNRT+ E AR M +++ 
Sbjct: 924  LKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENN 983

Query: 180  IPKTFWVDAVHTTIYL*NRGLLR----------------------VFGSECFIHNNDLTL 67
            + K FW +AV+T+ Y+ NR  +R                       FG  C+I N    L
Sbjct: 984  LAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYL 1043

Query: 66   VKWGSNVEQGIF 31
             K+ +  ++GIF
Sbjct: 1044 KKFDAKAQRGIF 1055


>emb|CAN74302.1| hypothetical protein VITISV_031363 [Vitis vinifera]
          Length = 556

 Score =  163 bits (413), Expect = 2e-37
 Identities = 133/435 (30%), Positives = 199/435 (45%), Gaps = 36/435 (8%)
 Frame = -2

Query: 1227 VKNRSKQGESSFMTTQKYIKNTKKVWKEKDACLLTEYMLNTSTFSNYWILDSGCTTHMTG 1048
            +++ S+  ESS    +K + N          C +    L+  +    W LDSGC+ HMTG
Sbjct: 93   MRDESESEESSEXXNEKEVANM---------CFMAIBELDEGSKKVKWFLDSGCSRHMTG 143

Query: 1047 NRKLIKNITAYDGG-V*FGNNETCKEI*KGKLNIHGKLSSTGE-VLLVQHMSYNLLRINN 874
            +      +T   GG V FG+NE  + I  G+ NI    SS  E VLLV  + +NLL I+ 
Sbjct: 144  DESKFXFLTKRKGGYVTFGDNEKGRII--GQDNIGNGTSSLIESVLLVDGLKHNLLSISQ 201

Query: 873  LCDNGLEVRFQRNLCYIFD-NEENSITAGKRMENLYILN------EDTCLLRNIENTSI* 715
            LCD G +V F+ + C I D   + +I  G R +N+Y +N       D C     + + + 
Sbjct: 202  LCDKGFKVIFEASHCIIKDIQNDKTIFMGXRCDNVYAINISKYDGHDRCFSSMHDQSWLW 261

Query: 714  HKILGQIHYSNI*NLVKYNAVRSLPSNKFST----QSCQTTNKQGHLLKKKN-IQAMES* 550
            H+ LG  +   I  L K   VR LP   F      + CQ   +  +  K K  I      
Sbjct: 262  HRRLGHANMDLISQLNKDELVRGLPKINFQKDKVCEXCQMGKQIKNSFKNKXFISTTRPL 321

Query: 549  TLYILIFVDQ*EL*ALEGTKFSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEAR 370
             L  +         +L G  ++ ++    +    +  L +K              +NE  
Sbjct: 322  ELLHMDLFGPSRTPSLGGKSYAFFIVDDFSRYTWVFFLSQKNEAFYEVSKFCNKVQNEKG 381

Query: 369  RKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFN 190
                C+R   G EF +++F+ +C  HGI+H FSA R PQ N ++ RKNRT+ E AR M N
Sbjct: 382  FTITCIRSYHGREFQNIDFEDYCNEHGINHNFSAPRTPQQNGVVERKNRTLQEMARTMLN 441

Query: 189  KSEIPKTFWVDAVHTTIYL*NRGLLR----------------------VFGSECFIHNND 76
            ++ +PK FWV+AV+T+ Y  N  LLR                      VFG +CFI N  
Sbjct: 442  ENNLPKYFWVEAVNTSCYXLNIILLRPILKKTPYELXKNKKPNISYFKVFGCKCFILNTK 501

Query: 75   LTLVKWGSNVEQGIF 31
              + K+ + ++ GIF
Sbjct: 502  DNIGKFDAKLDVGIF 516


>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
          Length = 1577

 Score =  159 bits (402), Expect = 4e-36
 Identities = 177/649 (27%), Positives = 265/649 (40%), Gaps = 41/649 (6%)
 Frame = -2

Query: 1854 SLKDFQQVVEFYK*ENKLLGRKCRSYEAEILDLKGKVIKLEIYFENLQKKYNEDTLITSK 1675
            S K  QQ  +  K    L   K  ++E EI  LKG+V  L    EN+ K           
Sbjct: 382  SEKILQQEAQLKKVIANLEAEK-EAHEEEISKLKGEVGFLNSKLENMTKSIK-------M 433

Query: 1674 LNKSSIKLERLIRNGKAHNDKRGLGHINTKGASATQFVRSIVPGEENSSYITNXXXXXXX 1495
            LNK S  L+ +++ GK   ++RGLG  N K A  T      VP + NS+  T        
Sbjct: 434  LNKGSDMLDZVLQLGKKVGNQRGLG-FNHKSAGRTTMTE-FVPAK-NSTGAT-------- 482

Query: 1494 XXXXKLHAAPQVSRIELLCYKQQQSKKIAVDYLASQ*QQNDQLTRQRTTVPLSDKQPLRT 1315
                                              SQ +     T+Q+     S ++  R 
Sbjct: 483  ---------------------------------MSQHRSRHHGTQQKR----SKRKKWRC 505

Query: 1314 NTPGHTHHTATYIHHLVPHSYAATPREV*VKNRSKQGESSFMTTQKYIKNTKKVW--KEK 1141
            +  G   H   + +HL  H +  T           QG SS           K +W  K K
Sbjct: 506  HYCGKYGHIKPFCYHLHGHPHHGT-----------QGSSS---------GRKMMWVPKHK 545

Query: 1140 DACLLTEYMLNTSTFSNYWILDSGCTTHMTGNRKLIKNI----TAYDGGV*FGNNETCKE 973
               L+    L  S   + W LDSGC+ HMTG ++ + NI    T+Y   V FG+    K 
Sbjct: 546  IVSLVVHTSLRASAKED-WYLDSGCSRHMTGVKEFLVNIEPCSTSY---VTFGDGSKGKI 601

Query: 972  I*KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITA 793
               GKL +H  L S  +VLLV+ ++ NL+ I+ LCD G  V F ++ C + + +   +  
Sbjct: 602  TGMGKL-VHEGLPSLNKVLLVKGLTVNLISISQLCDEGFNVNFTKSECLVTNEKSEVLMK 660

Query: 792  GKR-MENLYI------LNEDTCLLRNIENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSN 634
            G R  +N Y+       +  TCL    +   I H+  G +H   +  ++   AVR +P+ 
Sbjct: 661  GSRSKDNCYLWTPQESSHSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNL 720

Query: 633  KFS----TQSCQTTNKQGHLLKKKNIQAMES*TLYIL--IFVDQ*EL*ALEGTKFSCWL* 472
            K         CQ   KQ  +  +K      S  L +L    +   ++ +L G +++  + 
Sbjct: 721  KIEEGRICGECQ-IGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVV 779

Query: 471  TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESH 292
               +    +  ++ K  T           + E     K +R D G EF + +F +FC S 
Sbjct: 780  DDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSE 839

Query: 291  GIHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR 112
            GI H+FSA   PQ N I+ RKNRT+ EAAR M +  E+P   W +A++T  Y+ NR  LR
Sbjct: 840  GITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLR 899

Query: 111  ----------------------VFGSECFIHNNDLTLVKWGSNVEQGIF 31
                                  +FGS C+I  +     K     + GIF
Sbjct: 900  RGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIF 948


>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
          Length = 1550

 Score =  154 bits (389), Expect = 1e-34
 Identities = 162/599 (27%), Positives = 248/599 (41%), Gaps = 18/599 (3%)
 Frame = -2

Query: 1854 SLKDFQQVVEFYK*ENKLLGRKCRSYEAEILDLKGKVIKLEIYFENLQKKYNEDTLITSK 1675
            S K  QQ  +  K    L   K  ++E EI +LKG++  L    EN+ K           
Sbjct: 355  SEKILQQEAQLKKVIANLEAEK-EAHEDEISELKGEIGFLNSKLENMTKSIK-------M 406

Query: 1674 LNKSSIKLERLIRNGKAHNDKRGLGHINTKGASATQFVRSIVPGEENSSYITNXXXXXXX 1495
            LNK S  L+ +++ GK   ++RGLG  N K A  T      VP + NS+  T        
Sbjct: 407  LNKGSDLLDEVLQLGKNVGNQRGLG-FNHKSAGRTTMTE-FVPAK-NSTGAT-------- 455

Query: 1494 XXXXKLHAAPQVSRIELLCYKQQQSKKIAVDYLASQ*QQNDQLTRQRTTVPLSDKQPLRT 1315
                                              SQ +     T+Q+     S ++  R 
Sbjct: 456  ---------------------------------MSQHRSRHHGTQQKK----SKRKKWRC 478

Query: 1314 NTPGHTHHTATYIHHLVPHSYAATPREV*VKNRSKQGESSFMTTQKYIKNTKKVW--KEK 1141
            +  G   H   + +HL  H +  T           Q  SS           K +W  K K
Sbjct: 479  HYCGKYGHIKPFCYHLHGHPHHGT-----------QSSSS---------GRKMMWVPKHK 518

Query: 1140 DACLLTEYMLNTSTFSNYWILDSGCTTHMTGNRKLIKNI----TAYDGGV*FGNNETCKE 973
               L+    L  S   + W LDSGC+ HMTG ++ + NI    T+Y   V FG+    K 
Sbjct: 519  TVSLVVHTSLRASAKED-WYLDSGCSRHMTGVKEFLVNIEPCSTSY---VTFGDGSKGKI 574

Query: 972  I*KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITA 793
               GKL +H  L S  +VLLV+ ++ NL+ I+ LCD G  V F ++ C + + +   +  
Sbjct: 575  TGMGKL-VHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMK 633

Query: 792  GKR-MENLYILN------EDTCLLRNIENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSN 634
            G R  +N Y+          TCL    +   I H+  G +H   +  ++   AVR +P+ 
Sbjct: 634  GSRSKDNCYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNL 693

Query: 633  KFSTQSCQTTNKQGHLLKKKNIQAMES*TLYILIFVDQ-----*EL*ALEGTKFSCWL*T 469
            K          + G  +K  N +     T  +L  +        ++ +L   +++  +  
Sbjct: 694  KIEEGRICGECQIGKQVKMSNQKLQHQTTSRVLELLHMDLMGPMQVESLGRKRYAYVVVD 753

Query: 468  TSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHG 289
              +    +  ++ K  T           + E     K +R D G EF + +F +FC S G
Sbjct: 754  DFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEG 813

Query: 288  IHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR 112
            I H+FSA   PQ N I+ RKNRT+ EAAR M +  E+P   W +A++T  Y+ NR  LR
Sbjct: 814  ITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLR 872


>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  153 bits (387), Expect = 2e-34
 Identities = 175/652 (26%), Positives = 266/652 (40%), Gaps = 44/652 (6%)
 Frame = -2

Query: 1854 SLKDFQQVVEFYK*ENKLLGRKCRSYEAEILDLKGKVIKLEIYFENLQKKYNEDTLITSK 1675
            S K  QQ  +  K    L   K  ++E EI +LKG+V  L    EN+ K           
Sbjct: 381  SEKILQQEAQLKKVIANLEAEK-EAHEEEISELKGEVGFLNSKLENMTKSIK-------M 432

Query: 1674 LNKSSIKLERLIRNGKAHNDKRGLGHINTKGA---SATQFVRSIVPGEENSSYITNXXXX 1504
            LNK S  L+ +++ GK   ++RGLG  N K A   + T+FV +     +NS+  T     
Sbjct: 433  LNKGSDMLDEVLQLGKNVGNQRGLG-FNHKSACRITMTEFVPA-----KNSTGAT----- 481

Query: 1503 XXXXXXXKLHAAPQVSRIELLCYKQQQSKKIAVDYLASQ*QQNDQLTRQRTTVPLSDKQP 1324
                                                 SQ +     T+Q+     S ++ 
Sbjct: 482  ------------------------------------MSQHRSRHHGTQQKK----SKRKK 501

Query: 1323 LRTNTPGHTHHTATYIHHLVPHSYAATPREV*VKNRSKQGESSFMTTQKYIKNTKKVW-- 1150
             R +  G   H   + +HL  H +  T           Q  SS           K +W  
Sbjct: 502  WRCHYCGKYGHIKPFCYHLHGHPHHGT-----------QSSSS---------GRKMMWVP 541

Query: 1149 KEKDACLLTEYMLNTSTFSNYWILDSGCTTHMTGNRKLIKNI----TAYDGGV*FGNNET 982
            K K   L+    L  S   + W LDSGC+ HMTG ++ + NI    T+Y   V FG+   
Sbjct: 542  KHKIVSLVVHTSLRASAKED-WYLDSGCSRHMTGVKEFLVNIEPCSTSY---VTFGDGSK 597

Query: 981  CKEI*KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENS 802
             K    GKL +H  L S  +VLLV+ ++ NL+ I+ LCD G  V F ++ C + + +   
Sbjct: 598  GKITGMGKL-VHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEV 656

Query: 801  ITAGKR-MENLYILN------EDTCLLRNIENTSI*HKILGQIHYSNI*NLVKYNAVRSL 643
            +  G R  +N Y+          TCL    +   I H+  G +H   +  ++   AVR +
Sbjct: 657  LMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGI 716

Query: 642  PSNKFS----TQSCQTTNKQGHLLKKKNIQAMES*TLYIL--IFVDQ*EL*ALEGTKFSC 481
            P+ K         CQ   KQ  +  +K      S  L +L    +   ++ +L G +++ 
Sbjct: 717  PNLKIEEGRICGECQ-IGKQVKMSHQKLQHQTTSMVLELLHMDLMGPMQVESLGGKRYAY 775

Query: 480  WL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFC 301
             +    +    +  ++ K  T           + E     K +R D G EF + +F +FC
Sbjct: 776  VVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFC 835

Query: 300  ESHGIHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRG 121
             S GI H+FSA   PQ N I+ RKNRT+ EA R M +  E+P   W +A++T  Y+ NR 
Sbjct: 836  TSEGITHEFSAAITPQQNGIVERKNRTLQEATRVMLHAKELPYNLWAEAMNTACYIHNRV 895

Query: 120  LLR----------------------VFGSECFIHNNDLTLVKWGSNVEQGIF 31
             LR                      +FGS C+I  +     K     + GIF
Sbjct: 896  TLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIF 947


>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  153 bits (387), Expect = 2e-34
 Identities = 164/625 (26%), Positives = 251/625 (40%), Gaps = 41/625 (6%)
 Frame = -2

Query: 1782 SYEAEILDLKGKVIKLEIYFENLQKKYNEDTLITSKLNKSSIKLERLIRNGKAHNDKRGL 1603
            +++ EI +LKG+V  L    EN+ K           LNK S  L+ ++  GK   ++RGL
Sbjct: 404  AHKEEISELKGEVGFLNSKLENMTKSIK-------MLNKGSDTLDEVLLLGKNAGNQRGL 456

Query: 1602 GHINTKGASATQFVRSIVPGEENSSYITNXXXXXXXXXXXKLHAAPQVSRIELLCYKQQQ 1423
            G  N K A  T      VP +  +                       +S+     +  QQ
Sbjct: 457  G-FNPKSAGRTTMTE-FVPAKNRTG--------------------ATMSQHRSRHHGMQQ 494

Query: 1422 SKKIAVDYLASQ*QQNDQLTRQRTTVPLSDKQPLRTNTPGHTHHTATYIHHLVPHSYAAT 1243
             K                          S ++  R +  G   H   + +HL  H +  T
Sbjct: 495  KK--------------------------SKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGT 528

Query: 1242 PREV*VKNRSKQGESSFMTTQKYIKNTKKVW--KEKDACLLTEYMLNTSTFSNYWILDSG 1069
                                Q      K +W  K K   L+    L  S   + W LDSG
Sbjct: 529  --------------------QSSNSRKKMMWVPKHKAVSLVVHTSLRASAKED-WYLDSG 567

Query: 1068 CTTHMTGNRKLIKNI----TAYDGGV*FGNNETCKEI*KGKLNIHGKLSSTGEVLLVQHM 901
            C+ HMTG ++ + NI    T+Y   V FG+    K I  GKL +H  L S  +VLLV+ +
Sbjct: 568  CSRHMTGVKEFLLNIEPCSTSY---VTFGDGSKGKIIGMGKL-VHDGLPSLNKVLLVKGL 623

Query: 900  SYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGKR-MENLYILN------EDTCLL 742
            + NL+ I+ LCD G  V F ++ C + + +   +  G R  +N Y+          TCL 
Sbjct: 624  TANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLS 683

Query: 741  RNIENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKFS----TQSCQTTNKQGHLLKKK 574
               +   I H+  G +H   +  ++  +AVR +P+ K         CQ   KQ  +  +K
Sbjct: 684  SKEDEVRIWHQRFGHLHLRGMKKILDKSAVRGIPNLKIEEGRICGECQ-IGKQVKMSHQK 742

Query: 573  NIQAMES*TLYIL--IFVDQ*EL*ALEGTKFSCWL*TTSA**HGLRSLKRKGYTLSXXXX 400
                  S  L +L    +   ++ +L G +++  +    +    +  ++ K  T      
Sbjct: 743  LQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSGTFEVFKK 802

Query: 399  XXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIMGRKNRT 220
                 + E     K +R D G EF +  F +FC S GI H+FSA   PQ N I+ RKNRT
Sbjct: 803  LSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRT 862

Query: 219  MLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR----------------------VF 106
            + EAAR M +  E+P   W +A++T  Y+ NR  LR                      +F
Sbjct: 863  LQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIF 922

Query: 105  GSECFIHNNDLTLVKWGSNVEQGIF 31
            GS C+I  +     K     + GIF
Sbjct: 923  GSPCYILADREQRRKMDPKSDAGIF 947


>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
          Length = 1643

 Score =  152 bits (385), Expect = 4e-34
 Identities = 115/415 (27%), Positives = 193/415 (46%), Gaps = 35/415 (8%)
 Frame = -2

Query: 1170 KNTKKVWKEKDACLLTEYMLNTSTFSNYWILDSGCTTHMTGNRKLIKNITAY-DGGV*FG 994
            +N+K   + +D      Y          W  DSG + HMTG++  + N ++  +  V FG
Sbjct: 586  RNSKMYVRREDLYCHVAYTSIAEGVKKPWYFDSGASRHMTGSQANLNNYSSVKESNVMFG 645

Query: 993  NNETCKEI*KGKLNIHGKLSSTGE-----VLLVQHMSYNLLRINNLCDNGLEVRFQRNLC 829
                     KG++   G L+ T +     V  V+ ++ NL+ ++ LCD GL V F +  C
Sbjct: 646  GGA------KGRIKGKGDLTETEKPHLTNVYFVEGLTANLISVSQLCDEGLTVSFNKVKC 699

Query: 828  YIF-DNEENSITAGKRMENLYILNEDT-CLLRNIENTSI*HKILGQIHYSNI*NLVKYNA 655
            +   +  +N++T  +   N Y+  E   CL    E+  + H+ LG ++  ++  LV    
Sbjct: 700  WATNERNQNTLTGVRTGNNCYMWEEPKICLRAEKEDPVLWHQRLGHMNARSMSKLVNKEM 759

Query: 654  VRSLPSNKFSTQSCQTTNKQGHLLK--KKNIQAMES*TLYILIFVD---Q*EL*ALEGTK 490
            VR +P  K   +       QG  ++   K ++ +++  +  LI +D     +  ++ G +
Sbjct: 760  VRGVPELKHIEKIVCGACNQGKQIRVQHKRVEGIQTTQVLDLIHMDLMGPMQTESIAGKR 819

Query: 489  FSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFD 310
            +   L    +    +R ++ K  T +         +NE +   K +R D GGEF++  F+
Sbjct: 820  YVFVLVDDFSRYAWVRFIREKSETANSFKILALQLKNEKKMGIKQIRSDRGGEFMNEAFN 879

Query: 309  KFCESHGIHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL* 130
             FCES GI HQ+SA R PQ N ++ RKNRT+ E AR M + + +P+ FW +A+ T  Y+ 
Sbjct: 880  SFCESQGIFHQYSAPRTPQSNGVVERKNRTLQEMARAMIHGNGVPEKFWAEAISTACYVI 939

Query: 129  NR----------------------GLLRVFGSECFIHNNDLTLVKWGSNVEQGIF 31
            NR                         RVFG  C+I N+   L K+ S  E+G F
Sbjct: 940  NRVYVRLGSDKTPYEIWKGKKPNLSYFRVFGCVCYIMNDKDQLGKFDSRSEEGFF 994


>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  152 bits (385), Expect = 4e-34
 Identities = 164/625 (26%), Positives = 249/625 (39%), Gaps = 41/625 (6%)
 Frame = -2

Query: 1782 SYEAEILDLKGKVIKLEIYFENLQKKYNEDTLITSKLNKSSIKLERLIRNGKAHNDKRGL 1603
            ++E EI +LKG+V  L    E ++K           LNK S  L+ ++  GK   ++RGL
Sbjct: 404  AHEEEISELKGEVGFLNSKLETMKKSIK-------MLNKGSDTLDEVLLLGKNAGNQRGL 456

Query: 1602 GHINTKGASATQFVRSIVPGEENSSYITNXXXXXXXXXXXKLHAAPQVSRIELLCYKQQQ 1423
            G  N K A  T      VP +  +    +                       L  +   Q
Sbjct: 457  G-FNPKFAGRTTMTE-FVPAKNRTGTTMSQ---------------------HLSRHHGTQ 493

Query: 1422 SKKIAVDYLASQ*QQNDQLTRQRTTVPLSDKQPLRTNTPGHTHHTATYIHHLVPHSYAAT 1243
             KK                         S ++  R +  G   H   + +HL  H +  T
Sbjct: 494  QKK-------------------------SKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGT 528

Query: 1242 PREV*VKNRSKQGESSFMTTQKYIKNTKKVW--KEKDACLLTEYMLNTSTFSNYWILDSG 1069
                                Q      K +W  K K   L+    L  S   + W LDSG
Sbjct: 529  --------------------QSSNSRKKMMWVPKHKAVSLVVHTSLRASAKED-WYLDSG 567

Query: 1068 CTTHMTGNRKLIKNI----TAYDGGV*FGNNETCKEI*KGKLNIHGKLSSTGEVLLVQHM 901
            C+ HMTG ++ + NI    T+Y   V FG+    K I  GKL +H  L S  +VLLV+ +
Sbjct: 568  CSRHMTGVKEFLLNIEPCSTSY---VTFGDGSKGKIIGMGKL-VHDGLPSLNKVLLVKGL 623

Query: 900  SYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGKR-MENLYILN------EDTCLL 742
            + NL+ I+ LCD G  V F ++ C + + +   +  G R  +N Y+          TCL 
Sbjct: 624  TANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLS 683

Query: 741  RNIENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKFS----TQSCQTTNKQGHLLKKK 574
               +   I H+  G +H   +  ++   AVR +P+ K         CQ   KQ  +  +K
Sbjct: 684  SKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQ-IGKQVKMSHQK 742

Query: 573  NIQAMES*TLYIL--IFVDQ*EL*ALEGTKFSCWL*TTSA**HGLRSLKRKGYTLSXXXX 400
                  S  L +L    +   ++ +L G +++  +    +    +  ++ K  T      
Sbjct: 743  LRHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKE 802

Query: 399  XXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIMGRKNRT 220
                 + E     K +R D G EF +  F +FC S GI H+FSA   PQ N I+ RKNRT
Sbjct: 803  LSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRT 862

Query: 219  MLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR----------------------VF 106
            + EAAR M +  E+P   W +A++T  Y+ NR  LR                      +F
Sbjct: 863  LQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIF 922

Query: 105  GSECFIHNNDLTLVKWGSNVEQGIF 31
            GS C+I  +     K     + GIF
Sbjct: 923  GSPCYILADREQRRKMDPKSDAGIF 947


>emb|CAN65575.1| hypothetical protein VITISV_001033 [Vitis vinifera]
          Length = 440

 Score =  147 bits (372), Expect = 1e-32
 Identities = 119/379 (31%), Positives = 175/379 (46%), Gaps = 36/379 (9%)
 Frame = -2

Query: 1086 WILDSGCTTHMTGNRKLIKNITAYDGG-V*FGNNETCKEI*KGKLNIHGKLSSTGE-VLL 913
            W LDSGC+ +MTG+      +    GG V FG+N   + I +G  NI    SS  E VLL
Sbjct: 61   WFLDSGCSRYMTGDESKFSXLIKKXGGYVTFGDNAKGRIIGQG--NIGNDTSSLIESVLL 118

Query: 912  VQHMSYNLLRINNLCDNGLEVRFQRNLCYIFD-NEENSITAGKRMENLYILN------ED 754
            V  + + LL I+ LC+ G +V F+ + C I D   + +I  G R +N+Y +N       D
Sbjct: 119  VDGLKHILLSISQLCEKGFKVIFEASHCIIKDIQNDKTIFMGHRCDNVYAINISKYDGYD 178

Query: 753  TCLLRNIENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKFSTQSCQTTNKQGHLLKK- 577
             C     + + + H  LG  +   I  L KY  VR LP   F           G  +K  
Sbjct: 179  RCFSSMHDQSWLWHXRLGHANMDLISQLNKYELVRGLPKLNFKKDKVCEAYXVGKXIKNS 238

Query: 576  -KNIQAMES*TLYILIFVD---Q*EL*ALEGTKFSCWL*TTSA**HGLRSLKRKGYTLSX 409
             KN   +       L+ +D        +L G   +  +    +    +  L +K      
Sbjct: 239  FKNKNFISXSRPLELLHMDLFGPSRTPSLGGKSHAYVIVDDXSRYTWVLFLSQKNEAFYE 298

Query: 408  XXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIMGRK 229
                    +NE      C+R D G EF +++F+++C  HGI+H FSA+R  Q N ++ RK
Sbjct: 299  FSKFCNNVQNEKDFTITCIRSDHGREFENIDFEEYCNEHGINHNFSASRTLQQNGVVERK 358

Query: 228  NRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR--------------------- 112
            NRT+ E AR M N++ +PK FW +AV+T+ Y+ NR LLR                     
Sbjct: 359  NRTLQEMARTMLNENNLPKYFWAEAVNTSXYVLNRILLRXILKKNPYELWKNXKPNISYF 418

Query: 111  -VFGSECFIHNNDLTLVKW 58
             VFG +CFI N +  L K+
Sbjct: 419  KVFGCKCFILNTEDNLGKF 437


>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 822

 Score =  139 bits (351), Expect = 3e-30
 Identities = 109/413 (26%), Positives = 170/413 (41%), Gaps = 33/413 (7%)
 Frame = -2

Query: 1146 EKDACLLTEYMLNTSTFSNYWILDSGCTTHMTGNRKLIKNITA-YDGGV*FGNNETCKEI 970
            +K+   +    +   +  N W++DSGCT HMT N KL   I   +   +  GN       
Sbjct: 10   KKNLVFIARQEIKEPSGGNTWLIDSGCTNHMTPNEKLFTKINRDFKVPIRVGNGAVMMSE 69

Query: 969  *KGKLNIHGKLSSTG--EVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSI- 799
             KG + +  +    G  +VLLV  +  NLL +  +  NG +V  + N C I D+    I 
Sbjct: 70   GKGDIEVMTRKDKRGIRDVLLVPKLGKNLLSVPQMIINGYQVTLKNNYCTIHDSARKKIG 129

Query: 798  ---TAGKRMENLYILNEDTCLLRNIENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKF 628
                  K     ++ NE+T ++   E T + HK LG   +SN+  L     V  LP    
Sbjct: 130  EVEMVNKSFHLRWLSNEETAMVAKDEATELWHKRLGHTGHSNLKILQSKEMVTGLPKFNV 189

Query: 627  STQSCQTTNKQGH----LLKKKNIQAMES*TLYILIFVDQ*EL*ALEGTKFSCWL*TTSA 460
                C++     H      K+   +A     L         +  ++ G+++       + 
Sbjct: 190  EEGKCESCILSKHSRDPFPKESETRAKHKLELIHSDVCGPMQNSSINGSRYILTFIDDAT 249

Query: 459  **HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHH 280
                +  LK K              EN A  + K +R D G E+LS EF +F E +GI  
Sbjct: 250  RMVWVYFLKAKSEVFQTFKKFKNLVENNANCRIKKLRIDRGTEYLSKEFSEFLEGNGIER 309

Query: 279  QFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR-------- 124
            Q +A   PQ N++  R+NR+++E AR M    ++P   W +AVH   Y  NR        
Sbjct: 310  QLTAAYSPQQNEVSERRNRSLVEMARAMIKAKDLPLKLWAEAVHVAAYAQNRTPTRTLKN 369

Query: 123  --------------GLLRVFGSECFIHNNDLTLVKWGSNVEQGIF*VSQAQQK 7
                            ++VFGS C++H  D    KW    ++ IF    +Q K
Sbjct: 370  KTPLEAWSDSKPSVSHMKVFGSICYVHIPDEKRRKWDDKSKRAIFVGYSSQTK 422


>gb|ABM55238.1| integrase [Beta vulgaris]
          Length = 1516

 Score =  139 bits (349), Expect = 5e-30
 Identities = 110/375 (29%), Positives = 173/375 (46%), Gaps = 36/375 (9%)
 Frame = -2

Query: 1095 SNYWILDSGCTTHMTGNRKLIKNITAYDGG-V*FGNNETCKEI*KGKLNIHGKLSSTGEV 919
            +N W LDSGC+ HMTG++    ++T Y+GG V FG+N+      KG +   GK       
Sbjct: 568  NNTWYLDSGCSKHMTGDKTKFLSLTTYEGGSVTFGDNK------KGNIVAMGK------- 614

Query: 918  LLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFD-NEENSITAGKRMENLYILNED---- 754
             +V+ + +NLL I+  CD G  V+F +  C I +   +  I  G R  N YI++ D    
Sbjct: 615  -VVEGLKHNLLSISQFCDKGNTVKFDKEKCLIINIKTKKVILEGTRKGNTYIVDLDLVPQ 673

Query: 753  ---TCLLRNIENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKFS-TQSCQTTNKQGHL 586
               TCL    +++ + HK LG   +S +  L   + V  LPS KF   Q C    +   +
Sbjct: 674  INLTCLSVIEDDSLLWHKRLGHASFSLLEKLRSKDLVLGLPSIKFHIDQVCDACARGKQV 733

Query: 585  LKKKNIQAMES*TLYI-LIFVD---Q*EL*ALEGTKFSCWL*TTSA**HGLRSLKRKGYT 418
                  + + S T  + LI +D      + +  G ++   +    +    +  L  K  T
Sbjct: 734  RSSFKSKTIVSTTKPLELIHIDLCGPMRIQSRSGKRYVLVIVDDYSRYTWVIFLSSKDET 793

Query: 417  LSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIM 238
                       +N +  K   +R D G EF + +FD     +G+ H FSA R PQ N ++
Sbjct: 794  YDEFLVFAKRVQNLSGHKIMHIRSDHGKEFENYKFDDLSRDNGLDHNFSAPRTPQQNGVV 853

Query: 237  GRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLL------------------- 115
             RKNRT+ E +  M   SE+P+ FW +AV+T  ++ NR ++                   
Sbjct: 854  ERKNRTLEEMSGTMLIASELPRNFWAEAVNTACHIINRAMMRPIINKTPYELYFGKKPNI 913

Query: 114  ---RVFGSECFIHNN 79
               R FG +C++HNN
Sbjct: 914  TYFRTFGCKCYVHNN 928


>gb|ABH08430.1| putative integrase [Beta vulgaris]
          Length = 1516

 Score =  139 bits (349), Expect = 5e-30
 Identities = 110/375 (29%), Positives = 173/375 (46%), Gaps = 36/375 (9%)
 Frame = -2

Query: 1095 SNYWILDSGCTTHMTGNRKLIKNITAYDGG-V*FGNNETCKEI*KGKLNIHGKLSSTGEV 919
            +N W LDSGC+ HMTG++    ++T Y+GG V FG+N+      KG +   GK       
Sbjct: 568  NNTWYLDSGCSKHMTGDKTKFLSLTTYEGGSVTFGDNK------KGNIVAMGK------- 614

Query: 918  LLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFD-NEENSITAGKRMENLYILNED---- 754
             +V+ + +NLL I+  CD G  V+F +  C I +   +  I  G R  N YI++ D    
Sbjct: 615  -VVEGLKHNLLSISQFCDKGNTVKFDKEKCLIINIKTKKVILEGTRKGNTYIVDLDLVPQ 673

Query: 753  ---TCLLRNIENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKFS-TQSCQTTNKQGHL 586
               TCL    +++ + HK LG   +S +  L   + V  LPS KF   Q C    +   +
Sbjct: 674  INLTCLSVIEDDSLLWHKRLGHASFSLLEKLRSKDLVLGLPSIKFHIDQVCDACARGKQV 733

Query: 585  LKKKNIQAMES*TLYI-LIFVD---Q*EL*ALEGTKFSCWL*TTSA**HGLRSLKRKGYT 418
                  + + S T  + LI +D      + +  G ++   +    +    +  L  K  T
Sbjct: 734  RSSFKSKTIVSTTKPLELIHIDLCGPMRIQSRSGKRYVLVIVDDYSRYTWVIFLSSKDET 793

Query: 417  LSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIM 238
                       +N +  K   +R D G EF + +FD     +G+ H FSA R PQ N ++
Sbjct: 794  YDEFLVFAKRVQNLSGHKIMHIRSDHGKEFENYKFDDLSRDNGLDHNFSAPRTPQQNGVV 853

Query: 237  GRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLL------------------- 115
             RKNRT+ E +  M   SE+P+ FW +AV+T  ++ NR ++                   
Sbjct: 854  ERKNRTLEEMSGTMLIASELPRNFWAEAVNTACHIINRAMMRPIINKTPYELYFGKKPNI 913

Query: 114  ---RVFGSECFIHNN 79
               R FG +C++HNN
Sbjct: 914  TYFRTFGCKCYVHNN 928


>gb|AAO37957.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108712101|gb|ABF99896.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1969

 Score =  138 bits (348), Expect = 7e-30
 Identities = 122/469 (26%), Positives = 204/469 (43%), Gaps = 56/469 (11%)
 Frame = -2

Query: 1269 LVPHSYAATPREV*VKNRSKQGESSFMTTQKYIKNTKKVWKEKDACLLTEYMLNTSTFSN 1090
            +VP +  + P E+      KQ E      Q+  K  +K   E   C    ++      SN
Sbjct: 695  MVPMTSKSKPVELPRPKNPKQVEHK--QNQRQTKPVEKTKYECTYCGKAGHLDFGVGRSN 752

Query: 1089 YWILDSGCTTHMTGNRKLIKNITAYDGG--V*FGNNETCKEI*KGKLNIHGKLSSTGEVL 916
             W++DSGC+ HMTG  K   ++T   G   + FG+  + + + KG + ++ K     +V 
Sbjct: 753  SWLVDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLK-DVA 811

Query: 915  LVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGKRMENLYILNEDT----- 751
            LV  + YNLL ++ LCD  LEVRF+++   + D  E+ +    R+  ++  N D+     
Sbjct: 812  LVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRVGRVFFANFDSSAPGP 871

Query: 750  --CLLRNIENTSI--*HKILGQIHYSNI*NLVKYNAVRSLP------------------- 640
              CL+ + EN  +   H+ LG I + ++  +   + +R LP                   
Sbjct: 872  SRCLIAS-ENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVQKDLVCAPCRHGKMT 930

Query: 639  SNKFSTQSCQTTNKQGHLLKKKNIQAMES*TL----YILIFVDQ*EL*ALEGTKFSCWL* 472
            S+     +   T+  G LL    +      ++    Y+L+ VD       + +++S W  
Sbjct: 931  SSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVD-------DFSRYS-W-- 980

Query: 471  TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESH 292
                    +  L+ K  T             E     + +R D G EF +  F+ FC+S 
Sbjct: 981  --------VYFLESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSS 1032

Query: 291  GIHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR---- 124
            G+ HQFS+  +PQ N ++ RKNRT++E AR M ++   P+ FW +A+    ++ NR    
Sbjct: 1033 GVEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLR 1092

Query: 123  ------------------GLLRVFGSECFIHNNDLTLVKWGSNVEQGIF 31
                                LRVFG +CF+  +   L K+ S    GIF
Sbjct: 1093 TILHKTPYELRFGRRPKVSHLRVFGCKCFVLKSG-NLDKFESRSLDGIF 1140


>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa Japonica
            Group]
          Length = 2145

 Score =  138 bits (347), Expect = 9e-30
 Identities = 122/469 (26%), Positives = 205/469 (43%), Gaps = 56/469 (11%)
 Frame = -2

Query: 1269 LVPHSYAATPREV*VKNRSKQGESSFMTTQKYIKNTKKVWKEKDACLLTEYMLNTSTFSN 1090
            +VP +  + P E+      KQ E      Q+  K  +K   E   C    ++      SN
Sbjct: 695  MVPMTSKSKPVELPRPKNPKQVEHK--QNQRQTKPVEKTKYECTYCGKAGHLDFGVGRSN 752

Query: 1089 YWILDSGCTTHMTGNRKLIKNIT--AYDGGV*FGNNETCKEI*KGKLNIHGKLSSTGEVL 916
             W++DSGC+ HMTG  K   ++T  + D  + FG+  + + + KG + ++ K     +V 
Sbjct: 753  SWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMAKGTIKVNDKFMLK-DVA 811

Query: 915  LVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGKRMENLYILNEDT----- 751
            LV  + YNLL ++ LCD  LEVRF+++   + D  E+ +    R+  ++  N D+     
Sbjct: 812  LVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRVGRVFFANFDSSAPGP 871

Query: 750  --CLLRNIENTSI--*HKILGQIHYSNI*NLVKYNAVRSLP------------------- 640
              CL+ + EN  +   H+ LG I + ++  +   + +R LP                   
Sbjct: 872  SRCLIAS-ENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGKMT 930

Query: 639  SNKFSTQSCQTTNKQGHLLKKKNIQAMES*TL----YILIFVDQ*EL*ALEGTKFSCWL* 472
            S+     +   T+  G LL    +      ++    Y+L+ VD       + +++S W  
Sbjct: 931  SSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVD-------DFSRYS-W-- 980

Query: 471  TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESH 292
                    +  L+ K  T             E     + +R D G EF +  F+ FC+S 
Sbjct: 981  --------VYFLESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSS 1032

Query: 291  GIHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR---- 124
            G+ HQFS+  +PQ N ++ RKNRT++E AR M ++   P+ FW +A+    ++ NR    
Sbjct: 1033 GVEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLR 1092

Query: 123  ------------------GLLRVFGSECFIHNNDLTLVKWGSNVEQGIF 31
                                LRVFG +CF+  +   L K+ S    GIF
Sbjct: 1093 TILHKTPYELRFGRRPKVSHLRVFGCKCFVLKSG-NLDKFESRSLDGIF 1140


>emb|CAE03600.2| OSJNBb0004A17.2 [Oryza sativa Japonica Group]
          Length = 2256

 Score =  137 bits (344), Expect = 2e-29
 Identities = 114/426 (26%), Positives = 191/426 (44%), Gaps = 60/426 (14%)
 Frame = -2

Query: 1128 LTEYMLNTSTF----SNYWILDSGCTTHMTGNRKLIKNIT--AYDGGV*FGNNETCKEI* 967
            L E +  +S F    SN W++DSGC+ HMTG  K   ++T  + D  + FG+  + + + 
Sbjct: 715  LLESLRGSSDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMA 774

Query: 966  KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGK 787
            KG + ++ K     +V LV  + YNLL ++ LCD  LEVRF+++   + D  E+ +    
Sbjct: 775  KGTIKVNDKFMLK-DVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDIS 833

Query: 786  RMENLYILNEDT-------CLLRNIENTSI--*HKILGQIHYSNI*NLVKYNAVRSLP-- 640
            R+  ++  N D+       CL+ + EN  +   H+ LG I + ++  +   + +R LP  
Sbjct: 834  RVGRVFFANFDSSAPGPSRCLIAS-ENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKL 892

Query: 639  -----------------SNKFSTQSCQTTNKQGHLLKKKNIQAMES*TL----YILIFVD 523
                             S+     +   T+  G LL    +      ++    Y+L+ VD
Sbjct: 893  KVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVD 952

Query: 522  Q*EL*ALEGTKFSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD 343
                   + +++S W          +  L+ K  T             E     + +R D
Sbjct: 953  -------DFSRYS-W----------VYFLESKEETFGFFQSLARSLALEFPGALRAIRSD 994

Query: 342  *GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFW 163
             G EF +  F+ FC+S G+ HQFS+  +PQ N ++ RKNRT++E AR M ++   P+ FW
Sbjct: 995  NGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFW 1054

Query: 162  VDAVHTTIYL*NR----------------------GLLRVFGSECFIHNNDLTLVKWGSN 49
             +A+    ++ NR                        LRVFG +CF+  +   L K+ S 
Sbjct: 1055 TEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSHLRVFGCKCFVLKSG-NLDKFESR 1113

Query: 48   VEQGIF 31
               GIF
Sbjct: 1114 SLDGIF 1119


>gb|ABF94836.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1948

 Score =  137 bits (344), Expect = 2e-29
 Identities = 114/426 (26%), Positives = 191/426 (44%), Gaps = 60/426 (14%)
 Frame = -2

Query: 1128 LTEYMLNTSTF----SNYWILDSGCTTHMTGNRKLIKNIT--AYDGGV*FGNNETCKEI* 967
            L E +  +S F    SN W++DSGC+ HMTG  K   ++T  + D  + FG+  + + + 
Sbjct: 715  LLESLRGSSDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMA 774

Query: 966  KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGK 787
            KG + ++ K     +V LV  + YNLL ++ LCD  LEVRF+++   + D  E+ +    
Sbjct: 775  KGTIKVNDKFMLK-DVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDIS 833

Query: 786  RMENLYILNEDT-------CLLRNIENTSI--*HKILGQIHYSNI*NLVKYNAVRSLP-- 640
            R+  ++  N D+       CL+ + EN  +   H+ LG I + ++  +   + +R LP  
Sbjct: 834  RVGRVFFANFDSSAPGPSRCLIAS-ENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKL 892

Query: 639  -----------------SNKFSTQSCQTTNKQGHLLKKKNIQAMES*TL----YILIFVD 523
                             S+     +   T+  G LL    +      ++    Y+L+ VD
Sbjct: 893  KVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVD 952

Query: 522  Q*EL*ALEGTKFSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD 343
                   + +++S W          +  L+ K  T             E     + +R D
Sbjct: 953  -------DFSRYS-W----------VYFLESKEETFGFFQSLARSLALEFPGALRAIRSD 994

Query: 342  *GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFW 163
             G EF +  F+ FC+S G+ HQFS+  +PQ N ++ RKNRT++E AR M ++   P+ FW
Sbjct: 995  NGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFW 1054

Query: 162  VDAVHTTIYL*NR----------------------GLLRVFGSECFIHNNDLTLVKWGSN 49
             +A+    ++ NR                        LRVFG +CF+  +   L K+ S 
Sbjct: 1055 TEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSHLRVFGCKCFVLKSG-NLDKFESR 1113

Query: 48   VEQGIF 31
               GIF
Sbjct: 1114 SLDGIF 1119


>gb|ABF93543.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 2124

 Score =  137 bits (344), Expect = 2e-29
 Identities = 114/426 (26%), Positives = 191/426 (44%), Gaps = 60/426 (14%)
 Frame = -2

Query: 1128 LTEYMLNTSTF----SNYWILDSGCTTHMTGNRKLIKNIT--AYDGGV*FGNNETCKEI* 967
            L E +  +S F    SN W++DSGC+ HMTG  K   ++T  + D  + FG+  + + + 
Sbjct: 715  LLESLRGSSDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMA 774

Query: 966  KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGK 787
            KG + ++ K     +V LV  + YNLL ++ LCD  LEVRF+++   + D  E+ +    
Sbjct: 775  KGTIKVNDKFMLK-DVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDIS 833

Query: 786  RMENLYILNEDT-------CLLRNIENTSI--*HKILGQIHYSNI*NLVKYNAVRSLP-- 640
            R+  ++  N D+       CL+ + EN  +   H+ LG I + ++  +   + +R LP  
Sbjct: 834  RVGRVFFANFDSSAPGPSRCLIAS-ENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKL 892

Query: 639  -----------------SNKFSTQSCQTTNKQGHLLKKKNIQAMES*TL----YILIFVD 523
                             S+     +   T+  G LL    +      ++    Y+L+ VD
Sbjct: 893  KVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVD 952

Query: 522  Q*EL*ALEGTKFSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD 343
                   + +++S W          +  L+ K  T             E     + +R D
Sbjct: 953  -------DFSRYS-W----------VYFLESKEETFGFFQSLARSLALEFPGALRAIRSD 994

Query: 342  *GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFW 163
             G EF +  F+ FC+S G+ HQFS+  +PQ N ++ RKNRT++E AR M ++   P+ FW
Sbjct: 995  NGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFW 1054

Query: 162  VDAVHTTIYL*NR----------------------GLLRVFGSECFIHNNDLTLVKWGSN 49
             +A+    ++ NR                        LRVFG +CF+  +   L K+ S 
Sbjct: 1055 TEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSHLRVFGCKCFVLKSG-NLDKFESR 1113

Query: 48   VEQGIF 31
               GIF
Sbjct: 1114 SLDGIF 1119


>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
          Length = 2319

 Score =  135 bits (339), Expect = 8e-29
 Identities = 113/394 (28%), Positives = 179/394 (45%), Gaps = 38/394 (9%)
 Frame = -2

Query: 1104 STFSNYWILDSGCTTHMTGNRKLIKNI--TAYDGGV*FGNNETCKEI*KGKLNIHGKLSS 931
            S+  + W+LDSGCT HMTG + +   +  T     + FG++   K I  GK+ I  +  S
Sbjct: 729  SSGGSSWVLDSGCTNHMTGEKDMFHTLQLTQEAQEIVFGDSGKSKVIGIGKIPISDQ-QS 787

Query: 930  TGEVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSIT-AGKRMENLYILN-- 760
               VLLV  +SYNLL ++ LC  G    F      I   E++S+   G+    LY+++  
Sbjct: 788  LSNVLLVDSLSYNLLSVSQLCGMGYNCLFSDVDVKILRREDSSVAFTGRLKGKLYLVDFT 847

Query: 759  -----EDTCLLRNIENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKFSTQ----SCQT 607
                  +TCL+   +   + H+ L  +   N+  L K N +  L +  F       +CQ 
Sbjct: 848  TSKVTPETCLVAKSDKGWLWHRRLAHVGMRNLAKLQKDNHIIGLTNVVFEKDRVCGACQA 907

Query: 606  TNKQGHLLKKKNIQAMES*T--LYILIFVDQ*EL*ALEGTKFSCWL*TTSA**HGLRSLK 433
              + G   + KN+   +     L++ +F     + ++ G+K+   +    +    +  L 
Sbjct: 908  GKQHGVPHQSKNVVTTKRPLELLHMDLFGPVAYI-SIGGSKYGLVIVDDFSRFTWVFFLS 966

Query: 432  RKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ 253
             KG T           +NE   K K VR D G EF +   ++F    GI H+FS    PQ
Sbjct: 967  DKGETQEILKKFMRRAQNEFELKIKKVRSDNGTEFKNTGVEEFLGEEGIKHEFSVPYTPQ 1026

Query: 252  *NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLL-------------- 115
             N ++ RKNRT++EAAR M ++ + P  FW +AV+T  +  NR  L              
Sbjct: 1027 QNGVVERKNRTLIEAARTMLDEYKTPDNFWAEAVNTACHAINRLYLHKIYKKTAYELLTG 1086

Query: 114  --------RVFGSECFIHNNDLTLVKWGSNVEQG 37
                    RVFG +CFI N  +   K+   V++G
Sbjct: 1087 NKPKVDYFRVFGCKCFILNKKVKSSKFAPRVDEG 1120


>emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]
          Length = 1269

 Score =  132 bits (331), Expect = 7e-28
 Identities = 112/407 (27%), Positives = 173/407 (42%), Gaps = 53/407 (13%)
 Frame = -2

Query: 1092 NYWILDSGCTTHMTGNRKLIKNIT-AYDGGV*FGNNETCKEI*KGKLNIHGKLSS--TGE 922
            N W++DSGCT+HMT +  +  +I  +    V  GN E  +   KG + I  K  +     
Sbjct: 314  NTWLIDSGCTSHMTKHLSIFTSIDRSVQPKVKLGNGEVVQAKGKGTIAISTKRGTKIVTN 373

Query: 921  VLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGKRMENLYILNEDTC-- 748
            VL +  +  NLL +  +  NG  V F+ N C+I D     I   K   N + L  D    
Sbjct: 374  VLYIPDLDQNLLSVAQMLRNGYAVSFKENFCFISDVHGTKIAKIKMNGNSFYLKLDLVEG 433

Query: 747  --LLRNIENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKFSTQSCQTTN--KQGHL-- 586
                  I+ + + HK  G  +  ++  + +   V  +P    + Q+C++    KQ     
Sbjct: 434  HVFSAKIDESVVWHKRYGHFNLKSLRFMQEAGMVEDMPEISVNAQTCESCELGKQQRQPF 493

Query: 585  ---LKKKNIQAME---------------S*TLYILIFVDQ*EL*ALEGTKFS--CWL*TT 466
               + K+    +E               S  +Y  +F+D           FS   W+   
Sbjct: 494  PQNMSKRATHKLELIHSDICGPMSTTSLSNNVYFALFIDD----------FSRMTWV--- 540

Query: 465  SA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGI 286
                     LK K   LS         E ++ +  K +R D GGE+ S EF  FC+  GI
Sbjct: 541  -------YFLKTKSQVLSMFKSFKKMVETQSGQNVKVLRTDNGGEYTSKEFSVFCQEAGI 593

Query: 285  HHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR------ 124
             HQ +A   PQ N +  RKNRT++E AR M  + ++PK  W +AV+T++YL NR      
Sbjct: 594  VHQLTAPYSPQQNGVSKRKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSV 653

Query: 123  ----------GL------LRVFGSECFIHNNDLTLVKWGSNVEQGIF 31
                      G+      L+VFGS C++H   +   K     E+G+F
Sbjct: 654  QSKTPIEAWSGVKPSVKHLKVFGSFCYLHVPSVKRGKLDERAEKGVF 700


>ref|XP_004243132.1| PREDICTED: uncharacterized protein LOC101257086 [Solanum
            lycopersicum]
          Length = 868

 Score =  129 bits (324), Expect = 4e-27
 Identities = 123/422 (29%), Positives = 188/422 (44%), Gaps = 62/422 (14%)
 Frame = -2

Query: 1086 WILDSGCTTHMTGNRKL---IKNITAYDGGV*FGNNETCKEI*KGKLNIHGKLSSTG--- 925
            W L+S C  +MTG+++    +KNI    G V FGN ++      G++   GK+ S     
Sbjct: 429  WYLESACCRYMTGDKRSFLSLKNIKR--GNVAFGNGKS------GEIQGIGKVGSMDTHA 480

Query: 924  --EVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEE-NSITAGKRMENLY---IL 763
               V  V  + +NLL ++ + D G  V F    C I ++   N +  GKR +N+Y   I+
Sbjct: 481  IKNVYYVNGLQHNLLIVSQIYDKGNNVLFTEKECRITNSVTGNLVLLGKRHKNVYKAKIV 540

Query: 762  N--EDT--CLLRNIENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKF-STQSCQTT-- 604
            N  EDT  CL    + + I +K +G I  + I  L+  + VR LP+  F   Q C+T   
Sbjct: 541  NSKEDTLKCLSAVSDCSMIWNKRMGNISITTINKLISKDLVRGLPTKSFRDNQVCETCIQ 600

Query: 603  NKQGHLLKKKNIQAMES*TL--------------------YILIFVDQ*EL*ALEGTKFS 484
             KQ     K  +    +  L                    Y+ + VD       + ++F+
Sbjct: 601  GKQVRSSFKPKLTVSTTKPLELLHMDLCGPMRIQNRGGKRYVFVIVD-------DYSRFT 653

Query: 483  CWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKF 304
              L            L  K  T +         + +  ++   +R D G EF + +F +F
Sbjct: 654  WTL-----------FLATKDETFTMFEIFAKLVQKKLNKEIISIRSDHGLEFENSQFVQF 702

Query: 303  CESHGIHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR 124
            C ++GI H FSA R PQ N ++ RKNRT+ + AR M   S++PK +W +AV+   YL NR
Sbjct: 703  CSTNGIEHNFSAPRTPQQNGVVKRKNRTLEDIARTMLISSKLPKFYWTEAVNIGCYLINR 762

Query: 123  GL----------------------LRVFGSECFIHNNDL-TLVKWGSNVEQGIF*VSQAQ 13
             +                      LR FG  CFIHNND   L K+ +  ++GIF    +Q
Sbjct: 763  CMIRSVLNKTPYELLKGRKPNLAHLRAFGCACFIHNNDKDNLGKFDAKSDEGIFLRYSSQ 822

Query: 12   QK 7
             K
Sbjct: 823  SK 824