BLASTX nr result
ID: Ephedra27_contig00020238
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00020238
(615 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D sub... 82 1e-13
ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D sub... 81 2e-13
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su... 81 3e-13
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su... 81 3e-13
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub... 81 3e-13
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope... 81 3e-13
ref|NP_176490.2| DNA-directed RNA polymerase IV subunit 1 [Arabi... 80 3e-13
ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata] gi... 80 5e-13
ref|XP_006391790.1| hypothetical protein EUTSA_v10023214mg [Eutr... 79 8e-13
gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma... 79 1e-12
ref|XP_006300646.1| hypothetical protein CARUB_v10019657mg [Caps... 77 5e-12
ref|XP_006857931.1| hypothetical protein AMTR_s00069p00153410 [A... 76 9e-12
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin... 75 1e-11
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su... 73 6e-11
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su... 73 7e-11
gb|ESW30447.1| hypothetical protein PHAVU_002G153700g [Phaseolus... 73 7e-11
gb|ESW30448.1| hypothetical protein PHAVU_002G153700g [Phaseolus... 72 9e-11
gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus pe... 72 9e-11
gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus no... 72 1e-10
ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV su... 71 2e-10
>ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
[Cicer arietinum]
Length = 1474
Score = 82.0 bits (201), Expect = 1e-13
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 8/195 (4%)
Frame = +1
Query: 55 PWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQY 234
PWV HF L KE + + LE+ +++ L + Y ++L K + LPN+ +C Y
Sbjct: 992 PWVCHFHLDKENVTRRNLEVHSIIDSLYQRY-DSLRKGSKVTLPNLKISTKKC---SVHY 1047
Query: 235 LCS-------NDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQ 393
+ + +I C+ T +++ + V+ L + ++IP LLR +KG+
Sbjct: 1048 MAKEGGETSVDKEIDGEDCI-----TVTIVENYMNSVQ-LDVVRNMMIPFLLRTAIKGIF 1101
Query: 394 GVRSVVISGDEYSIAADT-NSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNR 570
++ V I + S + + N +GEL L V +SSD W L+ HC + +IDW R
Sbjct: 1102 EIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDRGTFWGALINHCHRIMPMIDWAR 1161
Query: 571 SYPVNPYGVSHSLGI 615
S+P N + + GI
Sbjct: 1162 SHPDNIHHFCSAFGI 1176
>ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
[Cicer arietinum] gi|502160026|ref|XP_004511608.1|
PREDICTED: DNA-directed RNA polymerase D subunit 1-like
isoform X2 [Cicer arietinum]
gi|502160029|ref|XP_004511609.1| PREDICTED: DNA-directed
RNA polymerase D subunit 1-like isoform X3 [Cicer
arietinum] gi|502160032|ref|XP_004511610.1| PREDICTED:
DNA-directed RNA polymerase D subunit 1-like isoform X4
[Cicer arietinum]
Length = 1475
Score = 81.3 bits (199), Expect = 2e-13
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 8/195 (4%)
Frame = +1
Query: 55 PWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQY 234
PWV HF L KE + + LE+ +++ L + Y ++L K + LPN+ + C Y
Sbjct: 992 PWVCHFHLDKENVTRRNLEVHSIIDSLYQRY-DSLRKGSKVTLPNLKISTNRKC--SVHY 1048
Query: 235 LCS-------NDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQ 393
+ + +I C+ T +++ + V+ L + ++IP LLR +KG+
Sbjct: 1049 MAKEGGETSVDKEIDGEDCI-----TVTIVENYMNSVQ-LDVVRNMMIPFLLRTAIKGIF 1102
Query: 394 GVRSVVISGDEYSIAADT-NSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNR 570
++ V I + S + + N +GEL L V +SSD W L+ HC + +IDW R
Sbjct: 1103 EIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDRGTFWGALINHCHRIMPMIDWAR 1162
Query: 571 SYPVNPYGVSHSLGI 615
S+P N + + GI
Sbjct: 1163 SHPDNIHHFCSAFGI 1177
>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Solanum tuberosum]
Length = 1233
Score = 80.9 bits (198), Expect = 3e-13
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 1/188 (0%)
Frame = +1
Query: 55 PWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQY 234
PWV HF + KE ++ + L++ +L+ L Y +K N LPN+ +C
Sbjct: 767 PWVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKGGN-DLPNLHITCKDCS------ 819
Query: 235 LCSNDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSVVI 414
+ K + +C+ T SV+ +L +VVIP LL +KG + V I
Sbjct: 820 VAEARKEKSEICI-----TVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDI 874
Query: 415 SGDEY-SIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYPVNPY 591
E S + + GEL L V +S + W L+ C + D+IDW RSYP + +
Sbjct: 875 LWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVH 934
Query: 592 GVSHSLGI 615
++ + GI
Sbjct: 935 DLTVAYGI 942
>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Solanum tuberosum]
Length = 1446
Score = 80.9 bits (198), Expect = 3e-13
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 1/188 (0%)
Frame = +1
Query: 55 PWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQY 234
PWV HF + KE ++ + L++ +L+ L Y +K N LPN+ +C
Sbjct: 980 PWVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKGGN-DLPNLHITCKDCS------ 1032
Query: 235 LCSNDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSVVI 414
+ K + +C+ T SV+ +L +VVIP LL +KG + V I
Sbjct: 1033 VAEARKEKSEICI-----TVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDI 1087
Query: 415 SGDEY-SIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYPVNPY 591
E S + + GEL L V +S + W L+ C + D+IDW RSYP + +
Sbjct: 1088 LWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVH 1147
Query: 592 GVSHSLGI 615
++ + GI
Sbjct: 1148 DLTVAYGI 1155
>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum
lycopersicum]
Length = 1446
Score = 80.9 bits (198), Expect = 3e-13
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 1/188 (0%)
Frame = +1
Query: 55 PWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQY 234
PWV HF + KE ++ + L++ +L+ L Y +K N LPN+ +C
Sbjct: 980 PWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKAGN-DLPNLHITCKDCS------ 1032
Query: 235 LCSNDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSVVI 414
+ K + +C+ T SV+ +L +VVIP LL +KG + V I
Sbjct: 1033 VAEVQKEKSEICI-----TVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDI 1087
Query: 415 SGDEY-SIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYPVNPY 591
E S + + GEL L V +S + W L+ C + D+IDW RSYP + +
Sbjct: 1088 LWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVH 1147
Query: 592 GVSHSLGI 615
++ + GI
Sbjct: 1148 DLTVAYGI 1155
>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
Length = 1138
Score = 80.9 bits (198), Expect = 3e-13
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 1/188 (0%)
Frame = +1
Query: 55 PWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQY 234
PWV HF + KE ++ + L++ +L+ L Y +K N LPN+ +C
Sbjct: 672 PWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKAGN-DLPNLHITCKDCS------ 724
Query: 235 LCSNDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSVVI 414
+ K + +C+ T SV+ +L +VVIP LL +KG + V I
Sbjct: 725 VAEVQKEKSEICI-----TVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDI 779
Query: 415 SGDEY-SIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYPVNPY 591
E S + + GEL L V +S + W L+ C + D+IDW RSYP + +
Sbjct: 780 LWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVH 839
Query: 592 GVSHSLGI 615
++ + GI
Sbjct: 840 DLTVAYGI 847
>ref|NP_176490.2| DNA-directed RNA polymerase IV subunit 1 [Arabidopsis thaliana]
gi|334183598|ref|NP_001185298.1| DNA-directed RNA
polymerase IV subunit 1 [Arabidopsis thaliana]
gi|75335311|sp|Q9LQ02.1|NRPD1_ARATH RecName:
Full=DNA-directed RNA polymerase IV subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1;
Short=AtNRPD1a; Short=Nuclear RNA polymerase D 1a;
AltName: Full=Protein RNA-DIRECTED DNA METHYLATION
DEFECTIVE 3; AltName: Full=Protein SILENCING DEFECTIVE 4;
AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 2;
AltName: Full=RNA polymerase IV subunit 1a; Short=POL IV
1a gi|8493592|gb|AAF75815.1|AC011000_18 Contains
similarity to DNA-directed RNA Polymerase alpha-subunit
from Methanococcus jannaschii gi|3915860 and contains
Ribosomal protein L36 PF|00444 and RNA-Polymerase
alpha-subunit PF|00623 domains. EST gb|AA597311 comes
from this gene [Arabidopsis thaliana]
gi|12323252|gb|AAG51604.1|AC010795_8 RNA polymerase IIA
largest subunit, putative; 12353-6556 [Arabidopsis
thaliana] gi|59939208|gb|AAX12372.1| DNA-directed RNA
polymerase beta subunit [Arabidopsis thaliana]
gi|68300852|gb|AAY89363.1| RNA polymerase IV largest
subunit [Arabidopsis thaliana]
gi|332195920|gb|AEE34041.1| nuclear RNA polymerase D1A
[Arabidopsis thaliana] gi|332195921|gb|AEE34042.1|
nuclear RNA polymerase D1A [Arabidopsis thaliana]
Length = 1453
Score = 80.5 bits (197), Expect = 3e-13
Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 4/189 (2%)
Frame = +1
Query: 31 SFTSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSE 210
S T P+ PWV HF +S++ L+ K L +++ L E+Y S+ R LKL + +
Sbjct: 971 SNTKVPLSPWVCHFHISEKVLKRKQLSAESVVSSLNEQYK---SRNRELKLDIV-----D 1022
Query: 211 CCRNGCQYLCSNDKIF--NSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVK 384
+ S+D+ ++VC+ T +V+ V L V+IP LL VK
Sbjct: 1023 LDIQNTNHCSSDDQAMKDDNVCI-----TVTVVEASKHSVLELDAIRLVLIPFLLDSPVK 1077
Query: 385 GVQGVRSVVISGDEYSIAADTNSKN--GELVLLVEISSDISALNSWKLLLKHCEAVTDII 558
G QG++ V I + A N + GEL L V + D N W LL+ C + D+I
Sbjct: 1078 GDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTMYGDRGKRNCWTALLETCLPIMDMI 1137
Query: 559 DWNRSYPVN 585
DW RS+P N
Sbjct: 1138 DWGRSHPDN 1146
>ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata] gi|297332282|gb|EFH62700.1|
NRPD1a [Arabidopsis lyrata subsp. lyrata]
Length = 1456
Score = 80.1 bits (196), Expect = 5e-13
Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 4/187 (2%)
Frame = +1
Query: 37 TSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECC 216
T P+ PWV HF +S++ L+ K L + +++ L E+Y S+ R LKL + +
Sbjct: 974 TKVPLSPWVCHFHISEKVLKRKQLNVESVVSSLNEQYK---SRNRELKLDIV-----DLD 1025
Query: 217 RNGCQYLCSNDKIF--NSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGV 390
+ S+DK +S C+ T +V+ V L V+IP LL VKG
Sbjct: 1026 IQSTNHCSSDDKAMKDDSFCI-----TVTVIEASKHSVLELDAIRLVLIPFLLDSPVKGS 1080
Query: 391 QGVRSVVISGDEYSIAADTNSKN--GELVLLVEISSDISALNSWKLLLKHCEAVTDIIDW 564
Q ++ V I + A N + GEL L V + D N W LL+ C + D+IDW
Sbjct: 1081 QEIKKVDILWTDRPKAPKRNGDHLAGELYLRVTMYGDRGKRNCWTALLETCLPIMDMIDW 1140
Query: 565 NRSYPVN 585
+RS+P N
Sbjct: 1141 SRSHPDN 1147
>ref|XP_006391790.1| hypothetical protein EUTSA_v10023214mg [Eutrema salsugineum]
gi|557088296|gb|ESQ29076.1| hypothetical protein
EUTSA_v10023214mg [Eutrema salsugineum]
Length = 1465
Score = 79.3 bits (194), Expect = 8e-13
Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 4/188 (2%)
Frame = +1
Query: 34 FTSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSEC 213
FT P+ PWV+HF +SK+ +++K L +++ L ++Y + ++ + L L ++ +
Sbjct: 980 FTRIPLSPWVLHFHISKKAMKQKQLNAESVVSSLNKQYTSRKNELK-LDLTDLQIQST-- 1036
Query: 214 CRNGCQYLCSNDKIFNS--VCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 387
N C + +DK + C+ +S S + E++ ++L V+IP LL VKG
Sbjct: 1037 --NHCSW---DDKAMDDDRFCITVTVVEASHFS--SLELDAIRL---VLIPFLLDSPVKG 1086
Query: 388 VQGVRSVVISGDEYSIAA--DTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIID 561
+ ++ V I + A + NS GEL L V + D N W LL+ C V D+ID
Sbjct: 1087 YREIKRVDILWADRPKAPKRNVNSLPGELFLKVTMYGDGGKKNFWSALLETCLPVMDVID 1146
Query: 562 WNRSYPVN 585
W RS+P N
Sbjct: 1147 WTRSHPDN 1154
>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
Length = 1112
Score = 79.0 bits (193), Expect = 1e-12
Identities = 56/204 (27%), Positives = 102/204 (50%), Gaps = 4/204 (1%)
Frame = +1
Query: 16 SKEALSFTS---SPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLP 186
S+ +SF++ + + PWV +F ++KE ++ L++ +++ L+ N K LKLP
Sbjct: 644 SEVTISFSTERRTNISPWVCNFCINKEVFMKRNLKLESVVHTLRAN-CNATPKKMKLKLP 702
Query: 187 NILFMGSECCRNGCQYLCSNDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKL 366
N+L +C + + +I SV V+ E S++ E E+L +VIP L
Sbjct: 703 NLLIENKDCSE--ADFHEDSSRICISVAVS-QNELSNLHFGSLKEYEILDYLRNMVIPVL 759
Query: 367 LRIHVKGVQGVRSV-VISGDEYSIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEA 543
LR VKG + V ++ DE S + + +GE + V +S + W +L++
Sbjct: 760 LRTVVKGFPEFKKVDILWKDEQSRSRFSKCSSGEPYVRVFMSENCERARFWNILVEKSLR 819
Query: 544 VTDIIDWNRSYPVNPYGVSHSLGI 615
+ +IDW+RS+P + + + GI
Sbjct: 820 IRSLIDWDRSHPDDVHDYGEAFGI 843
>ref|XP_006300646.1| hypothetical protein CARUB_v10019657mg [Capsella rubella]
gi|482569356|gb|EOA33544.1| hypothetical protein
CARUB_v10019657mg [Capsella rubella]
Length = 1459
Score = 76.6 bits (187), Expect = 5e-12
Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 5/188 (2%)
Frame = +1
Query: 37 TSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECC 216
+ +P+ PWV HF +S++ L+ K L +++ L E Y+ S+ R LKL +++ + +C
Sbjct: 981 SKAPLSPWVCHFHISEKVLKRKQLNAESVVSSLNEHYS---SRNRELKL-DLVDLDIQCT 1036
Query: 217 RNGCQYLCSNDKIF--NSVCVNF-VAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 387
N C S+DK +S C+ V E S L +++ ++L ++IP LL VKG
Sbjct: 1037 -NHCP---SDDKAMTDDSFCITVTVIEASKPL-----DLDAVRL---ILIPFLLDSPVKG 1084
Query: 388 VQGVRSVVISGDEYSIAADT--NSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIID 561
Q ++ V I + A N GEL L V ++ D N W L++ C + D+ID
Sbjct: 1085 YQEIKKVDILWTDRPKAPKMYGNHLAGELYLRVTMNGDRGKRNCWSSLVETCLPIMDMID 1144
Query: 562 WNRSYPVN 585
W+RS+P N
Sbjct: 1145 WSRSHPDN 1152
>ref|XP_006857931.1| hypothetical protein AMTR_s00069p00153410 [Amborella trichopoda]
gi|548862033|gb|ERN19398.1| hypothetical protein
AMTR_s00069p00153410 [Amborella trichopoda]
Length = 418
Score = 75.9 bits (185), Expect = 9e-12
Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 2/193 (1%)
Frame = +1
Query: 43 SPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNI-LFMGSECCR 219
S + PWV + KEK+R +GL I L++ L Y + R+ LP + +F G
Sbjct: 3 SNISPWVCQIHVCKEKMRARGLSIGLLVDALVRNYDSCTRGVRHFVLPKLHIFHGYGV-- 60
Query: 220 NGCQYLCSNDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGV 399
+ D ++ + E VL+ + + +++ +++IP LLR +KG + +
Sbjct: 61 ----FSFDGDDNPGTISIGVAME---VLADFPNPLNIMR---DLIIPLLLRTVIKGFEEI 110
Query: 400 RSVVISGDEYSIAADTN-SKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSY 576
+ V+I ++ + +GEL L V +S W +L K C+A+ +IDW RS+
Sbjct: 111 KKVMIFWKDHPRTSSLKRGHSGELFLKVAMSEKCKPGRLWSILQKRCDAIAKLIDWQRSH 170
Query: 577 PVNPYGVSHSLGI 615
P + + ++ GI
Sbjct: 171 PDSLQNICNAFGI 183
>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 1475
Score = 75.1 bits (183), Expect = 1e-11
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 1/188 (0%)
Frame = +1
Query: 55 PWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQY 234
PWV HF + KE ++++ L + ++NIL + N LPN+ C++ C
Sbjct: 992 PWVCHFHVYKEIMKKRNLNVDSIINILNGRCKS------NTNLPNVQIS----CKS-CSI 1040
Query: 235 LCSNDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSVVI 414
++ + ++C+ T +++ + + L +++IP LL +KG+ + V I
Sbjct: 1041 ADNHREKEETLCI-----TVTIVERSKNSSTRLATIQDLMIPFLLETVLKGLMEINKVDI 1095
Query: 415 SGDEYSIAADT-NSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYPVNPY 591
++ + T N GEL L V +S+D W LL+ +C + D+IDW S P N
Sbjct: 1096 LWKDWPRISKTHNQPYGELYLRVSMSADSEKTRLWNLLMDYCLPIMDMIDWTCSRPDNVR 1155
Query: 592 GVSHSLGI 615
S + GI
Sbjct: 1156 DFSLAYGI 1163
>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1386
Score = 73.2 bits (178), Expect = 6e-11
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 1/188 (0%)
Frame = +1
Query: 55 PWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECC-RNGCQ 231
PWV HF L++E ++ K L + ++ L ++Y N L K N +P++ + S+C NGC
Sbjct: 926 PWVTHFHLNQEAMKIKRLGLGYVVRELIDQY-NALRKQLNNTIPSVCILSSKCSVGNGC- 983
Query: 232 YLCSNDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSVV 411
+ N C V V S S++ ++K E VIP +L +KG ++V
Sbjct: 984 -------VKNQACC--VTMVVQVESNSTSQLTIIK---ERVIPSILATLLKGFLEFKNVK 1031
Query: 412 ISGDEYSIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYPVNPY 591
+ + S ELV+ V++S + W L C + ++IDW RS P Y
Sbjct: 1032 VQCQQDS----------ELVVRVDMSEHCKSGKFWATLQNACIPIMELIDWERSRPERLY 1081
Query: 592 GVSHSLGI 615
V S GI
Sbjct: 1082 DVFCSYGI 1089
>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1492
Score = 72.8 bits (177), Expect = 7e-11
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 1/188 (0%)
Frame = +1
Query: 55 PWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECC-RNGCQ 231
PW+ HF LS+E ++ K L + ++ L E+Y N L K N +P++ S C N C
Sbjct: 1032 PWITHFHLSQETMKIKRLRLGFIVRELIEQY-NALRKQSNNTIPSVCISNSNCSVGNECV 1090
Query: 232 YLCSNDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSVV 411
C+ C+ VA+ V S S++ ++K E VIP +L +KG ++V
Sbjct: 1091 KNCT-------CCITMVAQ---VESNSTSQLNIIK---ERVIPSILETLLKGFLEFKNVK 1137
Query: 412 ISGDEYSIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYPVNPY 591
+ EY ++ ELV+ V +S + W L C + ++IDW RS P
Sbjct: 1138 V---EYQ-------QDSELVVKVGMSEHCKSGKFWAALQNACIPIMELIDWERSQPERVN 1187
Query: 592 GVSHSLGI 615
+ S GI
Sbjct: 1188 DIFCSYGI 1195
>gb|ESW30447.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
Length = 1463
Score = 72.8 bits (177), Expect = 7e-11
Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 5/192 (2%)
Frame = +1
Query: 55 PWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSK----FRNLKLPNILFMGSECCRN 222
PWV HF L KE L + L++ +++ L + Y + ++ F LK+ + +
Sbjct: 983 PWVCHFHLDKEILMRRKLKVHSIIDYLYQRYYSQSTEPKVGFTKLKISSKKCSVDSTAKE 1042
Query: 223 GCQYLCSNDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVR 402
G + +C DK + C+ T +++ + ++ L +++IP L +KG ++
Sbjct: 1043 G-EDICI-DKEDSDDCI-----TVTIVENSENPIQ-LNSVRDLMIPFFLGTTIKGFMDIK 1094
Query: 403 SVVISGDEYSIAADT-NSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYP 579
V I + S ++ N +GEL L V ++S + W +L+ HC + IIDW RS+P
Sbjct: 1095 KVDILWNNQSKGTNSYNGSSGELYLRVTVASSGNTGRFWGVLVNHCHKIMQIIDWPRSHP 1154
Query: 580 VNPYGVSHSLGI 615
N +S + GI
Sbjct: 1155 DNINYLSSAYGI 1166
>gb|ESW30448.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
Length = 1464
Score = 72.4 bits (176), Expect = 9e-11
Identities = 51/192 (26%), Positives = 93/192 (48%), Gaps = 5/192 (2%)
Frame = +1
Query: 55 PWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSK----FRNLKLPNILFMGSECCRN 222
PWV HF L KE L + L++ +++ L + Y + ++ F LK+ + +
Sbjct: 983 PWVCHFHLDKEILMRRKLKVHSIIDYLYQRYYSQSTEPKVGFTKLKISSNRKCSVDSTAK 1042
Query: 223 GCQYLCSNDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVR 402
+ +C DK + C+ T +++ + ++ L +++IP L +KG ++
Sbjct: 1043 EGEDICI-DKEDSDDCI-----TVTIVENSENPIQ-LNSVRDLMIPFFLGTTIKGFMDIK 1095
Query: 403 SVVISGDEYSIAADT-NSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYP 579
V I + S ++ N +GEL L V ++S + W +L+ HC + IIDW RS+P
Sbjct: 1096 KVDILWNNQSKGTNSYNGSSGELYLRVTVASSGNTGRFWGVLVNHCHKIMQIIDWPRSHP 1155
Query: 580 VNPYGVSHSLGI 615
N +S + GI
Sbjct: 1156 DNINYLSSAYGI 1167
>gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
Length = 1356
Score = 72.4 bits (176), Expect = 9e-11
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 3/190 (1%)
Frame = +1
Query: 55 PWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLK--LPNILFMGSECCRNGC 228
PWV HF + KE +R++ L++ +++ L YA S LK L ++L C
Sbjct: 895 PWVTHFHICKEIVRKRRLKVHSVVDSL---YARCNSARPELKIVLRSLLITSKGC---SA 948
Query: 229 QYLCSNDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSV 408
C+ D ++ C+ T ++ + E L + ++VIP LL VKG V+ V
Sbjct: 949 AQTCNGDD--DTFCI-----TVTMPENSKNSSEQLDIARDLVIPFLLGTVVKGFLEVKKV 1001
Query: 409 -VISGDEYSIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYPVN 585
++ D + + +GEL L V +S W +L+ +C + D+IDW+RS+P N
Sbjct: 1002 DILWNDHPRESKKIHGSSGELYLRVSMSGKTGRRRLWSMLMDNCLQIMDLIDWSRSHPDN 1061
Query: 586 PYGVSHSLGI 615
+ + GI
Sbjct: 1062 VHDYCIAYGI 1071
>gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis]
Length = 1410
Score = 72.0 bits (175), Expect = 1e-10
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 1/168 (0%)
Frame = +1
Query: 85 EKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNS 264
E LR + L + ++N L E ++ T K +KLPN+ +C + ++ ++
Sbjct: 942 EILRRRRLTVQSVINSLYERHS-TSRKGSKVKLPNLRIRSKDC-----SVPATREEDNDT 995
Query: 265 VCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSV-VISGDEYSIAA 441
C+ E S NS ++++ + +++IP LL VKG + + V ++ D + +
Sbjct: 996 CCITVSIECSK-----NSVIQLITV-QDLLIPFLLETIVKGFREIEKVDILWSDRSNTSK 1049
Query: 442 DTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYPVN 585
T +GEL L V +S D + W L+ C + D+IDW+RS+P N
Sbjct: 1050 ATRDSSGELYLKVSMSGDSGVKSYWSTLMNDCLRIMDLIDWSRSHPEN 1097
>ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Glycine
max]
Length = 1369
Score = 71.2 bits (173), Expect = 2e-10
Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 6/193 (3%)
Frame = +1
Query: 55 PWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSK----FRNLKLP-NILFMGSECCR 219
PWV HF L KE + + L++ +++ L + Y + F NLK+ N +
Sbjct: 901 PWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDSKVCFTNLKISSNRKCSADSMAK 960
Query: 220 NGCQYLCSNDKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGV 399
G S DK C+ T +++ + ++ L ++VIP LL +KG V
Sbjct: 961 EGED--TSIDKKEGDDCI-----TVTIVENSKNPIQ-LDSVRDLVIPFLLGTAIKGFLDV 1012
Query: 400 RSV-VISGDEYSIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSY 576
+ V V+ ++ + N +GEL L V +SS+ S W +LL C + IIDW RS+
Sbjct: 1013 KKVDVLWNNQSKVKNSCNGFSGELYLRVTLSSEGSRGRFWGVLLNLCHKIMHIIDWTRSH 1072
Query: 577 PVNPYGVSHSLGI 615
P N S + GI
Sbjct: 1073 PDNINHFSSAYGI 1085