BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00019812
         (1369 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           291   4e-76
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   286   2e-74
ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutr...   284   5e-74
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   283   1e-73
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   283   2e-73
ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A...   282   3e-73
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   281   3e-73
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   281   6e-73
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...   280   8e-73
ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   279   2e-72
ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatul...   278   3e-72
ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mit...   276   1e-71
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   276   1e-71
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   276   2e-71
gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theob...   275   3e-71
ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mit...   275   3e-71
gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   275   4e-71
ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Caps...   274   6e-71
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   273   1e-70
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   273   1e-70

>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  291 bits (745), Expect = 4e-76
 Identities = 165/398 (41%), Positives = 230/398 (57%), Gaps = 3/398 (0%)
 Frame = +1

Query: 178  RSLHVITTNRGYPYSIKNINNNTIFTAWFCNSRTKERDTTEDEDFPFFIKLPPYEEKADM 357
            R L +++  R   + +  ++ +T        S + E++ T+      +  LPP+    D 
Sbjct: 8    RRLLLLSPPRTADHCVAKLSPSTFHYHLSHYSASSEKNGTK------WFTLPPHTATVDG 61

Query: 358  PTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXX 537
              LGK +        +  +  K    TAL+WV +CCPE+P +L+QK+FRLRQV+      
Sbjct: 62   AVLGKAIAGAKDDDVKVLQASKSAATTALKWVVRCCPELPRSLVQKLFRLRQVR-RESFN 120

Query: 538  XXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMK 717
                                 + +  G K++L              EK +    +   +K
Sbjct: 121  VEDCNAGDQLGKPRLRRVSAKDSLNLGDKIFLPISVKELPV-----EKKECF-CNEEEVK 174

Query: 718  YIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDC 897
            +I SL +YKDP ++V+NKP GLPVQGG GI+ S+D LAV  LSY Y E PRLVHRLD+DC
Sbjct: 175  FIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSLDQLAVTCLSYDYTEPPRLVHRLDRDC 234

Query: 898  SGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIA 1077
            SG+LVMGRT+ SA++LH++FREKT   S+++       L+RRYWA VIG+     G I A
Sbjct: 235  SGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKIVLQRRYWAFVIGSPRHPNGLISA 294

Query: 1078 PLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRV 1257
            PL KVV D+  S+RI + +     S+Q A+T ++VIG S +G TWLEL P TGRKHQ+RV
Sbjct: 295  PLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYKVIGSSSHGYTWLELSPLTGRKHQLRV 354

Query: 1258 HCAEALGMPILGDYKYGWSAHKKWRPF---DPISKHIE 1362
            HCAE LG P++GDYKYGW AH+ W+P    DP +K IE
Sbjct: 355  HCAEVLGTPMVGDYKYGWQAHRDWKPLHWPDPDNKCIE 392


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
            gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
            pseudouridine synthase 4, mitochondrial; AltName:
            Full=RNA pseudouridylate synthase 4; AltName:
            Full=RNA-uridine isomerase 4; Flags: Precursor
            gi|11994467|dbj|BAB02469.1| unnamed protein product
            [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
            thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
            synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  286 bits (731), Expect = 2e-74
 Identities = 162/374 (43%), Positives = 220/374 (58%), Gaps = 1/374 (0%)
 Frame = +1

Query: 220  SIKNINNNTIFTAWFCNSRTKERDTTEDEDFPF-FIKLPPYEEKADMPTLGKNLMEDNFP 396
            +I    N T   +   +  T+   TT+ +D    ++ LPP+    D   +GK+L+ D   
Sbjct: 21   TISTFKNPTKALSAAAHQSTRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDS 80

Query: 397  IERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXX 576
            ++ S    K    TALRW+ +C P++P  L+QK+FRLRQV+                   
Sbjct: 81   VKSSTDNSK---TTALRWILRCRPDLPRTLVQKLFRLRQVR----REMSMSVDGDELQRS 133

Query: 577  XXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQL 756
                    E +  G ++YL             ++K +S +      K++ SLV+YKDP +
Sbjct: 134  QLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKK-ESFQCSDEERKFVCSLVLYKDPAI 192

Query: 757  IVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESA 936
            IVLNKP GL VQGG GI+ SID LA + L +   E PRLVHRLD+DCSG+LV+ RT+ +A
Sbjct: 193  IVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAA 252

Query: 937  SLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSE 1116
            ++LH++FREKT   S+       + LKR+Y ALVIG   +++G+I APL KVV DD  SE
Sbjct: 253  TVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSE 312

Query: 1117 RILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGD 1296
            RI +    E  STQ A+T++RVI  S +G TWLEL P TGRKHQ+RVHCAE LG PI+GD
Sbjct: 313  RITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGD 372

Query: 1297 YKYGWSAHKKWRPF 1338
            YKYGW AHK   PF
Sbjct: 373  YKYGWQAHKAREPF 386


>ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum]
            gi|557107647|gb|ESQ47954.1| hypothetical protein
            EUTSA_v10020633mg [Eutrema salsugineum]
          Length = 477

 Score =  284 bits (727), Expect = 5e-74
 Identities = 158/350 (45%), Positives = 207/350 (59%)
 Frame = +1

Query: 289  DTTEDEDFPFFIKLPPYEEKADMPTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCP 468
            D  +D+    ++ LPP+    D   +GK L  D   ++ S         TALRW+ +C P
Sbjct: 48   DDDDDDPRGKWLTLPPFSPTIDAAAVGKELFSDGDSVKASS----DGSTTALRWILRCRP 103

Query: 469  EVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXX 648
            ++P  L+QK+FRLRQV+                           E +  G ++YL     
Sbjct: 104  DLPRTLVQKLFRLRQVR----REMSLSCDGDELQRSQLKRVAAKESLNLGDRIYLPLSVN 159

Query: 649  XXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSL 828
                      K +S        K++ SLV+YKDP +IVLNKP GL VQGG GI+ SID L
Sbjct: 160  NDAPPPA---KKESFCCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGTGIKISIDEL 216

Query: 829  AVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQ 1008
            A   L++G  E PRLVHRLD+DCSG+LV+GRT+ +A++LH++FREKT   S+       +
Sbjct: 217  AATCLTFGKSESPRLVHRLDRDCSGLLVLGRTQTAATVLHSIFREKTSGASAYSVKKNIK 276

Query: 1009 KLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIG 1188
             LKR+Y ALVIG   +++G+I APL KVV DD  S+RI +    E  STQ A+T++RVI 
Sbjct: 277  SLKRKYLALVIGCPRRQRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIE 336

Query: 1189 PSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRPF 1338
             S +G TWLEL P TGRKHQ+RVHCAE LG PILGDYKYGW AHK   PF
Sbjct: 337  SSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPILGDYKYGWQAHKSREPF 386


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 471

 Score =  283 bits (724), Expect = 1e-73
 Identities = 153/339 (45%), Positives = 205/339 (60%), Gaps = 2/339 (0%)
 Frame = +1

Query: 328  LPPYEEKADMPTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRL 507
            LPPY    +   LG  +M      E          +TAL+WV +CCPE+P +L+QK+FRL
Sbjct: 63   LPPYTATVNGSILGNRIMNGGGQAELGA---STAAITALKWVIRCCPELPRSLVQKLFRL 119

Query: 508  RQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQ 687
            R  KV                          +I+  G +++L             +EK +
Sbjct: 120  R--KVRRGSSMIENSEYNLEARDQLKRVAAKDILNVGDQIFLPMSVQVFS-----TEKTR 172

Query: 688  SLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGP 867
                +     ++ SLV++KDP ++V+NKP GLPVQGG G+++S+D LA + LSYGY E P
Sbjct: 173  DY-CNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPP 231

Query: 868  RLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQK--LKRRYWALVI 1041
            RLVHRLD+D SG+L+MGRT  S SLLH++FREKT + S     +  +K  L +RYWALVI
Sbjct: 232  RLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVI 291

Query: 1042 GTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLEL 1221
            G+  + +G I APL K+V DD  SE+I++    E    Q A+T ++VI  S +G TWLEL
Sbjct: 292  GSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI-KSHHGYTWLEL 350

Query: 1222 CPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRPF 1338
            CP TGRKHQ+RVHCAE LG PI+GDYKYGW AHK W+PF
Sbjct: 351  CPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPF 389


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum
            tuberosum]
          Length = 467

 Score =  283 bits (723), Expect = 2e-73
 Identities = 156/361 (43%), Positives = 212/361 (58%)
 Frame = +1

Query: 244  TIFTAWFCNSRTKERDTTEDEDFPFFIKLPPYEEKADMPTLGKNLMEDNFPIERSKRKHK 423
            T+  A  CN    E+          ++ LPP+    +   LG+ L      ++   +++ 
Sbjct: 41   TVTAAQVCNRNENEKAK--------WLTLPPFTATVNGAALGRELAG----VKMDVKENS 88

Query: 424  PPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXE 603
               +TAL+WV +CCPE+P +L+QK+FRLRQV+                           E
Sbjct: 89   TNTMTALKWVQRCCPELPKSLVQKLFRLRQVR----------RDSSNVEEQRPKRVSAKE 138

Query: 604  IMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGL 783
             M  G +++L             SEK           K++ SL +YKDP+++V+NKP G+
Sbjct: 139  SMNVGDRIFLPITVQKFP-----SEKVVYYPSSEEERKFVHSLELYKDPEIVVVNKPPGM 193

Query: 784  PVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFRE 963
            PVQGG GI++S+D LA   + + Y E PRLVHRLD+DCSG+LVMGRT+ SAS LH++FRE
Sbjct: 194  PVQGGIGIKRSLDELAAKYMRHEYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFRE 253

Query: 964  KTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKE 1143
            KT    +ED     + L+++YWALVIG   +  G I APL K+V D+  SERI I  +  
Sbjct: 254  KTFDSQNEDLESKKRILQKKYWALVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVR 313

Query: 1144 GNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHK 1323
              S Q AVT++R+IG S  G TWLEL P TGRKHQ+RVHCAEALG PI+GDYKYGW AH+
Sbjct: 314  APSAQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHR 373

Query: 1324 K 1326
            K
Sbjct: 374  K 374


>ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda]
            gi|548850328|gb|ERN08832.1| hypothetical protein
            AMTR_s00015p00025410 [Amborella trichopoda]
          Length = 457

 Score =  282 bits (721), Expect = 3e-73
 Identities = 144/307 (46%), Positives = 194/307 (63%), Gaps = 1/307 (0%)
 Frame = +1

Query: 421  KPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXX 600
            K P  TAL+WV +CCP+VP +L+QK+FRLRQV+                           
Sbjct: 71   KAPSTTALKWVLRCCPQVPRSLIQKLFRLRQVRKESLNPAIASCLHKQAQYQQIKRVFAK 130

Query: 601  EIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSG 780
            + +  G +++L              E       +   M+YI SL +YKD  ++V+NKP G
Sbjct: 131  DTLNSGDRIFLPITVNPAV------EVEDDYICNKEEMEYIRSLEVYKDAAIVVVNKPPG 184

Query: 781  LPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFR 960
            LPVQGG G++ S+D L  ++L Y Y E PRLVHRLD+D SG+LVMGRT+ES +LLH++FR
Sbjct: 185  LPVQGGTGVKLSLDVLVASSLKYDYSEVPRLVHRLDQDSSGILVMGRTQESTTLLHSIFR 244

Query: 961  EKTEKFS-SEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHE 1137
            +KT   S + D       LKR+YWALVIG     +G I APL+K++ DD  SERI ++ +
Sbjct: 245  DKTCGASFNVDIKNSKIILKRKYWALVIGNPQPSEGLISAPLSKLLLDDGKSERITVSED 304

Query: 1138 KEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSA 1317
             +  S + A+T++RV+  S +G TWLEL P TGRKHQ+RVHCAE LG PILGDYKYGW+A
Sbjct: 305  SKNKSARHAITEYRVLRSSGHGFTWLELYPRTGRKHQLRVHCAEVLGTPILGDYKYGWNA 364

Query: 1318 HKKWRPF 1338
            H+KW+PF
Sbjct: 365  HRKWKPF 371


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 466

 Score =  281 bits (720), Expect = 3e-73
 Identities = 152/339 (44%), Positives = 205/339 (60%), Gaps = 2/339 (0%)
 Frame = +1

Query: 328  LPPYEEKADMPTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRL 507
            LPPY    +   LG  +M      E          +TAL+WV +CCPE+P +L+QK+FRL
Sbjct: 63   LPPYTATVNGSILGNRIMNGGGQAELGA---STAAITALKWVIRCCPELPRSLVQKLFRL 119

Query: 508  RQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQ 687
            R+V                            +I+  G +++L             +EK +
Sbjct: 120  RKVP-------RQLNVGCGNSHHQLKRVAAKDILNVGDQIFLPMSVQVFS-----TEKTR 167

Query: 688  SLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGP 867
                +     ++ SLV++KDP ++V+NKP GLPVQGG G+++S+D LA + LSYGY E P
Sbjct: 168  DY-CNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPP 226

Query: 868  RLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQK--LKRRYWALVI 1041
            RLVHRLD+D SG+L+MGRT  S SLLH++FREKT + S     +  +K  L +RYWALVI
Sbjct: 227  RLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVI 286

Query: 1042 GTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLEL 1221
            G+  + +G I APL K+V DD  SE+I++    E    Q A+T ++VI  S +G TWLEL
Sbjct: 287  GSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI-KSHHGYTWLEL 345

Query: 1222 CPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRPF 1338
            CP TGRKHQ+RVHCAE LG PI+GDYKYGW AHK W+PF
Sbjct: 346  CPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPF 384


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
            lycopersicum]
          Length = 467

 Score =  281 bits (718), Expect = 6e-73
 Identities = 165/401 (41%), Positives = 225/401 (56%), Gaps = 2/401 (0%)
 Frame = +1

Query: 130  MAQRWFSSLLF--SRTATRSLHVITTNRGYPYSIKNINNNTIFTAWFCNSRTKERDTTED 303
            MA+ W    +F  SR    +   + T     Y ++     T+  A  CN    E+     
Sbjct: 1    MARPWLFRRVFHRSRQLFAASDDVQTLYSAFYRLQCHYATTVTDAQVCNRNENEKAK--- 57

Query: 304  EDFPFFIKLPPYEEKADMPTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFA 483
                 ++ LPP+    +   LG+ L      ++    ++    +TAL+WV +CCPE+P +
Sbjct: 58   -----WLTLPPFTAAVNGAALGRELAG----VKMDVNENSTNTMTALKWVQRCCPELPKS 108

Query: 484  LLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXX 663
            L+QK+FRLRQV+                           E M  G +++L          
Sbjct: 109  LVQKLFRLRQVR----------RDSSNVEEQRPKRVSAKESMNVGDRIFLPITVQKFP-- 156

Query: 664  XXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAAL 843
               SEK           K++ SL +YKD ++IV+NKP G+PVQGG GI++S+D LA   +
Sbjct: 157  ---SEKVVYYPSSEEERKFVHSLELYKDAEIIVVNKPPGMPVQGGIGIKRSLDELAAKYM 213

Query: 844  SYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRR 1023
            S+ Y E PRLVHRLD+DCSG+LVMGRT+ SAS LH++FREKT    +ED     + L+++
Sbjct: 214  SHQYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKK 273

Query: 1024 YWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYG 1203
            YWALVIG   +  G I APL K+V D+  SERI I  +    S Q AVT++R+IG S  G
Sbjct: 274  YWALVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVREPSAQYAVTEYRIIGSSEKG 333

Query: 1204 CTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKK 1326
             TWLEL P TGRKHQ+RVHCAEALG PI+GDYKYGW AH+K
Sbjct: 334  YTWLELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRK 374


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 477

 Score =  280 bits (717), Expect = 8e-73
 Identities = 154/340 (45%), Positives = 207/340 (60%)
 Frame = +1

Query: 319  FIKLPPYEEKADMPTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQKM 498
            ++ LPP+    D   +GK+L+ D   ++ S    K    TALRW+ +C P++P  L+QK+
Sbjct: 55   WLTLPPFSPTIDGTAVGKDLLSDGDSVKASTDNSK---TTALRWILRCRPDLPRTLVQKL 111

Query: 499  FRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSE 678
            FRLRQV+                           E +  G ++YL             ++
Sbjct: 112  FRLRQVR----RQMSLSVDGHELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPPTPPAK 167

Query: 679  KAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYK 858
            K +S +      K++ SLV+YKDP +IVLNKP GL VQGG GI+ SID LA   L++   
Sbjct: 168  K-ESFQCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAATCLTFDKS 226

Query: 859  EGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALV 1038
            E PRLVHRLD+DCSG+LV+ RT+ +A++LH++FREKT   S+       + LKR+Y ALV
Sbjct: 227  ESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTCGASAYGVKKNIKSLKRKYMALV 286

Query: 1039 IGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLE 1218
            IG   +++G+I APL KVV DD  S+RI +    E  STQ A+T+++VI  S +G TWLE
Sbjct: 287  IGCPRRQKGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYKVIESSPHGYTWLE 346

Query: 1219 LCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRPF 1338
            L P TGRKHQ+RVHCAE LG PILGDYKYGW AHK   PF
Sbjct: 347  LRPLTGRKHQLRVHCAEVLGTPILGDYKYGWQAHKAREPF 386


>ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cicer
            arietinum]
          Length = 458

 Score =  279 bits (714), Expect = 2e-72
 Identities = 145/302 (48%), Positives = 194/302 (64%)
 Frame = +1

Query: 436  TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 615
            TAL+WV +CCP++P  L+ K+FRLRQV++                          + +  
Sbjct: 80   TALKWVTQCCPQIPKTLVHKLFRLRQVRMLPNSPLIADKLKRVGAK---------DTLNS 130

Query: 616  GMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 795
            G +++L              +  Q L L  + +K++ SLVIYKDP  +VLNKP G+PVQG
Sbjct: 131  GDRIFLPNSVKQQHQHQQTPK--QPLTLTPKQIKFMRSLVIYKDPATVVLNKPPGMPVQG 188

Query: 796  GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 975
            G  I+ S+D+LA ++L+Y Y + PRLVHRLD+DCSG+LVMGRT+ S  +LH++FR+KT +
Sbjct: 189  GINIKWSLDALAASSLNYDYSQPPRLVHRLDRDCSGILVMGRTQTSTVVLHSIFRDKTSR 248

Query: 976  FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 1155
             S  + T   + L+RRYWALVIG   +  G I +PL KVV D+  S+RI I +     S+
Sbjct: 249  ASDHNDTE-KRILQRRYWALVIGRPRRSGGLITSPLGKVVVDNGKSDRITIVNNSTLVSS 307

Query: 1156 QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 1335
            Q AVT++RV+G S  G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AHKKW  
Sbjct: 308  QHAVTEYRVLGSSSDGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKKWGH 367

Query: 1336 FD 1341
            FD
Sbjct: 368  FD 369


>ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatula]
            gi|355501934|gb|AES83137.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 430

 Score =  278 bits (712), Expect = 3e-72
 Identities = 145/302 (48%), Positives = 192/302 (63%), Gaps = 1/302 (0%)
 Frame = +1

Query: 439  ALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPG 618
            AL+WV +CCPE+P  L+ K+FRL+QV++                          + +  G
Sbjct: 50   ALKWVIRCCPELPKTLIHKLFRLKQVRMLPRQQDDNKFKRVTPK----------DTLNSG 99

Query: 619  MKLYLXXXXXXXXXXXXMSEKAQS-LRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 795
             +++L               K +S L L  + + +I SLVIYKDP ++VLNKP G+PVQG
Sbjct: 100  DRIFLPNSVKQQIPLTPTPPKHESPLTLTAKQINFIRSLVIYKDPHILVLNKPPGMPVQG 159

Query: 796  GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 975
            G  I+ S+D++A  +L+Y Y + PRLVHRLD+DCSG+LVMGRTK S +LLH++FREKT +
Sbjct: 160  GINIKLSLDAVAAQSLNYDYSQPPRLVHRLDRDCSGILVMGRTKTSTALLHSIFREKTSR 219

Query: 976  FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 1155
             S+E+       L+RRYWALV+G   +  G + APL KVV D+  S+RI I       S+
Sbjct: 220  ASNEENDTEKIILQRRYWALVLGCPRRSGGVVNAPLGKVVVDNGKSDRITIVDNSALLSS 279

Query: 1156 QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 1335
            Q AVT++RVI  S +G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYG  AHKKW  
Sbjct: 280  QHAVTEYRVISSSSHGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHKKWGQ 339

Query: 1336 FD 1341
            FD
Sbjct: 340  FD 341


>ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X2 [Glycine max]
          Length = 429

 Score =  276 bits (707), Expect = 1e-71
 Identities = 141/302 (46%), Positives = 190/302 (62%)
 Frame = +1

Query: 436  TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 615
            TAL+WV +CCP +P AL+ K+FRLRQV++                           I+ P
Sbjct: 56   TALKWVVRCCPHLPRALVHKLFRLRQVRIHPATVIQQQTFKRVRVAAKDTLNTGDRILLP 115

Query: 616  GMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 795
                              + +      L  + + +I +LVIYKDP ++VLNKP G+PVQG
Sbjct: 116  --------------QSVKVKQTPTHSHLTPQQINFIRTLVIYKDPAILVLNKPPGMPVQG 161

Query: 796  GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 975
            G  I++S+D++A A+L+YGY + PRLVHRLD+DCSG+LVMGRT  S ++LH++FREKT +
Sbjct: 162  GINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTSR 221

Query: 976  FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 1155
             +S+D     + L+RRYWALV+G   + +G + A L KVV D+  S+RI I       S+
Sbjct: 222  -ASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSS 280

Query: 1156 QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 1335
            Q A+T++RVI  S  G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AH+KW  
Sbjct: 281  QHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH 340

Query: 1336 FD 1341
            FD
Sbjct: 341  FD 342


>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  276 bits (707), Expect = 1e-71
 Identities = 151/335 (45%), Positives = 202/335 (60%)
 Frame = +1

Query: 328  LPPYEEKADMPTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRL 507
            LP +    D  +LGK L      +            TAL+WV +CCP++P +L+QK+FRL
Sbjct: 59   LPAFTPVVDASSLGKVLSGHRTDLNTGNTT-AGASTTALKWVVRCCPQLPRSLVQKLFRL 117

Query: 508  RQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQ 687
            RQV+                           ++M  G ++ L             SEK +
Sbjct: 118  RQVR-RESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPITVEEFP-----SEKHE 171

Query: 688  SLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGP 867
                +   + ++ +L +YKDP +IV+NKP GLPVQGG GI++S+D LA   L Y   E P
Sbjct: 172  -YHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPP 230

Query: 868  RLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGT 1047
            RLVHRLD+D SG+L+MGRT+ SA++LH++FREKT   S+ D     + L+RRYWALVIG+
Sbjct: 231  RLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGS 290

Query: 1048 LNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCP 1227
              + +G I APL KVV DD  SERI I    +  S+Q A+T++RVI  S +G TWLEL P
Sbjct: 291  PRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSP 350

Query: 1228 FTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWR 1332
             TGRKHQ+RVHCAE LG PI+GDYKYGW AH+KW+
Sbjct: 351  LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWK 385


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  276 bits (705), Expect = 2e-71
 Identities = 161/389 (41%), Positives = 218/389 (56%), Gaps = 11/389 (2%)
 Frame = +1

Query: 220  SIKNINNNTIFTAWFCNSRT--KERDTTEDE-------DFPFFIKLPPYEEKADMPTLGK 372
            S+  I+N  IF + +  + T  + + +T+D+       +   F  LPPY        LGK
Sbjct: 86   SLLCISNRCIFQSHYFTTTTITQTKSSTKDQTSKNNTKNTGKFFTLPPYTSTISGSALGK 145

Query: 373  NLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXX 552
             L         +       + TAL+WV +CCPE+P  L+QK+FRLRQVK           
Sbjct: 146  AL-------SATATAKASTETTALKWVLRCCPELPRNLVQKLFRLRQVK------RELLN 192

Query: 553  XXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESL 732
                            ++M  G +++L            +  + Q      +   +I  L
Sbjct: 193  VGDGEMEHKTKRVAAKDLMNVGDRIFLPISVQA------LPFEKQKCHCGEKEANFIRGL 246

Query: 733  VIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLV 912
             +YKD  +IV+NKP G+PVQGG GI+ S D LA + LSY Y E PRLVHRLD+D SG+LV
Sbjct: 247  ELYKDEAIIVVNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRLVHRLDRDSSGILV 306

Query: 913  MGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKV 1092
            MGRT+ S  +LH++FREKT   S+ D     + L+R+YWALVIG+  +++G I APL KV
Sbjct: 307  MGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVIGSPRRQKGIISAPLGKV 366

Query: 1093 VSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEA 1272
            V DD  S+RI +    E  S Q AVT +RV+  S +G  WLEL P TGRKHQ+RVHCAE 
Sbjct: 367  VVDDGKSDRITVVENAESTSFQHAVTQYRVM-ESSHGYAWLELSPITGRKHQLRVHCAEV 425

Query: 1273 LGMPILGDYKYGWSAHKKWR--PFDPISK 1353
            LG PI+GDYKYGW  H+KW+  PF  + K
Sbjct: 426  LGTPIVGDYKYGWQVHRKWKQLPFPNLEK 454


>gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
          Length = 477

 Score =  275 bits (703), Expect = 3e-71
 Identities = 150/355 (42%), Positives = 209/355 (58%), Gaps = 4/355 (1%)
 Frame = +1

Query: 280  KERDTTEDEDFPFFIKLPPYEEKADMPTLGKNLMEDNFPIERSKRKHKPP--KVTALRWV 453
            K+   +E +    +  LPP+ +  +   LG  L         S + H     + TA++WV
Sbjct: 50   KDDGNSEKKKKNKWFTLPPFTKTVNASVLGAKL---------SGKPHSKAANETTAVKWV 100

Query: 454  AKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMK--L 627
             +CCPE+P +L+QK+FRLRQV+                           ++ R G K  L
Sbjct: 101  MRCCPELPRSLVQKLFRLRQVR---------RESHVLEVAGDGCQVQTVQLKRVGAKDAL 151

Query: 628  YLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGI 807
             +              E+ Q        + +I  L +YKDP +IVLNKP G+PVQGG GI
Sbjct: 152  NIGDRIFLPFSVREFREEKQESGCTEEELNFIRGLELYKDPAIIVLNKPPGMPVQGGIGI 211

Query: 808  QKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSE 987
            + S+D LA A L + Y E PRLVHRLD+D SG+LVMGRT+ SA++LH++FRE+T   S +
Sbjct: 212  KWSLDKLAAACLCFDYSEPPRLVHRLDRDSSGILVMGRTQMSATILHSVFREETNDASKD 271

Query: 988  DPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAV 1167
            D     + L++RYWALVIG+  + +G I+APL KVV DD  S+RI +    +  S+Q A 
Sbjct: 272  DVDNEKRILQKRYWALVIGSPRRPKGMIVAPLRKVVVDDGKSDRITVFDNSQIVSSQRAK 331

Query: 1168 TDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWR 1332
            T+++VI  + +G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AH++W+
Sbjct: 332  TEYQVIKTTSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRRWQ 386


>ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 427

 Score =  275 bits (703), Expect = 3e-71
 Identities = 141/302 (46%), Positives = 193/302 (63%)
 Frame = +1

Query: 436  TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 615
            TAL+WV +CCP +P AL+ K+FRLRQV++                          + +  
Sbjct: 56   TALKWVVRCCPHLPRALVHKLFRLRQVRIHPATVIQQQTFKRVAAK---------DTLNT 106

Query: 616  GMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 795
            G ++ L            + +      L  + + +I +LVIYKDP ++VLNKP G+PVQG
Sbjct: 107  GDRILLPQSVK-------VKQTPTHSHLTPQQINFIRTLVIYKDPAILVLNKPPGMPVQG 159

Query: 796  GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 975
            G  I++S+D++A A+L+YGY + PRLVHRLD+DCSG+LVMGRT  S ++LH++FREKT +
Sbjct: 160  GINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTSR 219

Query: 976  FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 1155
             +S+D     + L+RRYWALV+G   + +G + A L KVV D+  S+RI I       S+
Sbjct: 220  -ASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSS 278

Query: 1156 QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 1335
            Q A+T++RVI  S  G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AH+KW  
Sbjct: 279  QHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH 338

Query: 1336 FD 1341
            FD
Sbjct: 339  FD 340


>gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  275 bits (702), Expect = 4e-71
 Identities = 147/342 (42%), Positives = 204/342 (59%), Gaps = 6/342 (1%)
 Frame = +1

Query: 328  LPPYEEKADMPTLGKNLMED-----NFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQ 492
            LPP+    +   LGK L  +     +   + +         TAL+WV +CCPE+P +L+Q
Sbjct: 53   LPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTTTALKWVTRCCPELPRSLVQ 112

Query: 493  KMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXX- 669
            K+FRLRQV+                           + M  G +++L             
Sbjct: 113  KLFRLRQVR-RESCDMECSGEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPNDKQE 171

Query: 670  MSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSY 849
            +    +        + +I SL +YKDP +IV+NKP G+PVQGG GI++S+D LA A LSY
Sbjct: 172  LPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAACLSY 231

Query: 850  GYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYW 1029
             + E PRLVHRLD+D SG+LVMGRT+ SA++LH++FREKT   S+++     + L+RRYW
Sbjct: 232  DFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQRRYW 291

Query: 1030 ALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCT 1209
            ALVIG+  Q++G I APL KVV D+  S+RI I ++ +   +Q A+T ++VIG    G T
Sbjct: 292  ALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVIGSPCPGYT 351

Query: 1210 WLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 1335
            WLEL P TGRKHQ+RVHCAE L  PI+GDYKYGW  H+ W+P
Sbjct: 352  WLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWKP 393


>ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Capsella rubella]
            gi|482566291|gb|EOA30480.1| hypothetical protein
            CARUB_v10013603mg [Capsella rubella]
          Length = 476

 Score =  274 bits (701), Expect = 6e-71
 Identities = 152/339 (44%), Positives = 200/339 (58%)
 Frame = +1

Query: 319  FIKLPPYEEKADMPTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQKM 498
            ++ LPP+    D   +GK L  +   I  S         TALRW+ +C P++P  L+QK+
Sbjct: 55   WLTLPPFSPTVDGTAVGKELASEGDSITGSTDSST---TTALRWILRCRPDLPRTLVQKL 111

Query: 499  FRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSE 678
            FRLRQV+                           E +  G ++YL               
Sbjct: 112  FRLRQVR----REMSVSCDGDEVQRSQLKRVAAKESLNVGDRIYLPLSVDNDAPPPPA-- 165

Query: 679  KAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYK 858
            K +S R      K++ SLV+YKDP +IVLNKP G+ VQGG GI+ SID LA   L++   
Sbjct: 166  KKESFRCSEEERKFVCSLVLYKDPSIIVLNKPHGMAVQGGTGIKTSIDELAATCLTFDKS 225

Query: 859  EGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALV 1038
            E PRLVHRLD+DCSG+LV+ RT+ +A++LH++FREKT   S+       + LKR+Y ALV
Sbjct: 226  ESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTSGASAYGVKKNIKSLKRKYMALV 285

Query: 1039 IGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLE 1218
            IG   +++G+I APL KVV DD  S+RI +    E  STQ A+T++RVI  S +G TWLE
Sbjct: 286  IGCPRRQRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWLE 345

Query: 1219 LCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 1335
            L P TGRKHQ+RVHCAE LG PI+GDYKYGW AHK   P
Sbjct: 346  LRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKSREP 384


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
            gi|557524859|gb|ESR36165.1| hypothetical protein
            CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  273 bits (698), Expect = 1e-70
 Identities = 149/354 (42%), Positives = 204/354 (57%)
 Frame = +1

Query: 283  ERDTTEDEDFPFFIKLPPYEEKADMPTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKC 462
            + +  +DE    +  LPP+    D   LG+ L            K    + TAL+WV +C
Sbjct: 69   DNNNGDDERRGKWFTLPPFTSTIDGSALGRQLA--------CPSKSPISETTALKWVLQC 120

Query: 463  CPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXX 642
            CP +P   +QK+FRL QV+                           + ++ G +++L   
Sbjct: 121  CPGLPRNFVQKLFRLSQVR-RESPSLDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPIS 179

Query: 643  XXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSID 822
                        + +        + +I+SL +YKD  +IV+NKP G+PVQGG GI++SID
Sbjct: 180  IQESP------SRKEKCPCTEEEVGFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSID 233

Query: 823  SLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMF 1002
             LA   L+Y Y E PRLVHRLD+D SG+LVMGRT+ SA++LH++FREKT   S ED    
Sbjct: 234  ELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNE 293

Query: 1003 GQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRV 1182
             + L+R YWALV+GT    +G I APL KVV D+  S+RI + +  +  S Q AVT ++V
Sbjct: 294  KRILQRWYWALVVGTPRCSKGVISAPLRKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 353

Query: 1183 IGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRPFDP 1344
            I PS +G TWL+L P TGRKHQ+RVHCAE LG PI+GDYKYGW  H+KW+ F P
Sbjct: 354  IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHP 407


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
            vesca subsp. vesca]
          Length = 476

 Score =  273 bits (698), Expect = 1e-70
 Identities = 151/338 (44%), Positives = 202/338 (59%), Gaps = 2/338 (0%)
 Frame = +1

Query: 328  LPPYEEKADMPTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRL 507
            LPP+ +  +   LG+ L   +   +   +       TAL+WV +CCPE+P  L+QK+FRL
Sbjct: 55   LPPFTDTVNGAALGRELSR-SVGRDVYAKPSAAAATTALKWVTRCCPEIPRNLVQKLFRL 113

Query: 508  RQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQ 687
            RQV+                           + M  G ++ L               K +
Sbjct: 114  RQVR--------REASDMDQSVQPLKRVGTKDSMNLGDRICLPISVKEFP-----DHKQK 160

Query: 688  SLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGP 867
                     ++I SLV+YKDP +IV+NKP GLPVQGG GI++S+D LA   LSY   + P
Sbjct: 161  EGHCSEEEAEFIRSLVLYKDPAIIVINKPPGLPVQGGIGIKRSLDELAATCLSYDLSQPP 220

Query: 868  RLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQK--LKRRYWALVI 1041
            RLVHRLD+DCSG+LVMGRT+ SA++LH++FREKT  F + D  +   K  L+RRY ALVI
Sbjct: 221  RLVHRLDRDCSGILVMGRTQTSATVLHSVFREKT--FGASDDVIKHAKSILQRRYLALVI 278

Query: 1042 GTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLEL 1221
            G+  Q++G I  PL KVV D+  S+RI I ++ +   +Q A+T ++VIG S  G TWLEL
Sbjct: 279  GSPRQQEGLISVPLGKVVVDNGKSDRITILNKAQCLPSQHAITKYKVIGSSCPGFTWLEL 338

Query: 1222 CPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 1335
             P TGRKHQ+RVHCAE LG PI+GDYKYGW  HK W+P
Sbjct: 339  IPLTGRKHQLRVHCAEVLGTPIVGDYKYGWRTHKDWKP 376