BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00019624
         (1516 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo s...   110   1e-34
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi...   119   2e-33
gb|EFA05312.1| hypothetical protein TcasGA2_TC015470 [Tribolium ...   117   2e-33
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]   107   5e-33
gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao]   120   7e-33
gb|EOY32548.1| Uncharacterized protein TCM_040529 [Theobroma cacao]   119   2e-32
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]   106   2e-31
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    95   3e-31
gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]           98   3e-31
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]   106   7e-31
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi...   109   1e-30
emb|CAN76821.1| hypothetical protein VITISV_017285 [Vitis vinifera]   116   1e-30
gb|AGW47867.1| polyprotein [Phaseolus vulgaris]                       117   3e-30
gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyr...    94   6e-30
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   114   1e-29
emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera]    96   2e-29
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         112   3e-29
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   112   3e-29
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   112   3e-29
prf||1107279B ORF g                                                   105   7e-29

>gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo subsp. melo]
          Length = 1038

 Score =  110 bits (275), Expect(3) = 1e-34
 Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 13/232 (5%)
 Frame = +3

Query: 708  ITQNKKIIIEGYE*NGIFAMRLVTIENFLT*E----ENNKLWHRRLGHINDSYLYKINKA 875
            +T+N   + +GY  NG+F +  +++    +      E+  LWH RLGH+N + + K+   
Sbjct: 427  LTKNGNFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDM 486

Query: 876  TTDGPVMNIKFLNCEDCILTKMHKLSFKPKTTNSTNI*DICGSIFP-----ISHDHK*YI 1040
                     +   C  CI +K HK  FKP    +T + ++  S         S   K Y 
Sbjct: 487  RLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTELLELIYSDLADFRTTASRGGKNYY 546

Query: 1041 LTFTDDFSKMS*CFTMKKRMKSS----KFLSNSENWFKYKKMHVKIKYLRSDNGGEYLSN 1208
            ++F DD+S+ +  + +K + ++     KF + SEN     ++  +IK LRSD GGEY   
Sbjct: 547  VSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESEN-----QLGKRIKRLRSDRGGEYSDK 601

Query: 1209 EFIKLYERKWIERKLIVPFTPQQNGVAERKNMTLVEMIMSLIFGSKMSSK*W 1364
               +  E   I  +   P++PQQNG+AERKN TL EM+ +++  S +S   W
Sbjct: 602  TLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMW 653



 Score = 43.9 bits (102), Expect(3) = 1e-34
 Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 1/146 (0%)
 Frame = +2

Query: 197 TRTNQSKTSNRYYHICQRDNHNITMCYFNAK*PNFKRRRMPRSVQNNEANITKNFDDQTY 376
           T   Q K      ++C+++ H    C         +R+  P      +AN+ +   +   
Sbjct: 270 TTGGQIKKKKLVCYVCRKEGHKSYQCN--------QRKGRPSQKPTPQANLAEQDSEIIA 321

Query: 377 VFLTQKDSDPKESWYLDLGYNYHMIENKEMFQNLKFFNNYQYVRTTGEEKLPMLGIDNIN 556
             +     + K  W LD G + H   N+E+  + +   + + V         ++G   + 
Sbjct: 322 AIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTVDGECVFMGNSATAGVIGKGKVI 381

Query: 557 LTFEDNQ-ISLNNTYFVKGLRRNLIS 631
           L     + +SL+N  +V  LRRNL+S
Sbjct: 382 LKLTSGKTLSLSNVLYVPSLRRNLVS 407



 Score = 41.2 bits (95), Expect(3) = 1e-34
 Identities = 22/52 (42%), Positives = 31/52 (59%)
 Frame = +2

Query: 1358 MMDETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCYCHIP 1513
            M  E  L+A  ILN IP + L+  T YE+W    P +S+L+V+GCL    +P
Sbjct: 652  MWGEAVLSACFILNRIPHKRLDK-TPYELWKGHAPNLSYLKVWGCLAKVPLP 702


>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1499

 Score =  119 bits (298), Expect(2) = 2e-33
 Identities = 73/198 (36%), Positives = 109/198 (55%), Gaps = 10/198 (5%)
 Frame = +3

Query: 801  EENNKLWHRRLGHINDSYLYKIN--KATTDGPVMNIKFLNCEDCILTKMHKLSFKPKTTN 974
            EE   LWH+R GH+N   +  +   K     P   +    C  C + K  + SF  K+ +
Sbjct: 451  EEQTDLWHKRFGHVNYDKIETMQTLKIVEKLPKFEVIKGICAACEMGKQSRRSFPKKSQS 510

Query: 975  STNI*------DICGSIFPISHDHK*YILTFTDDFSKMS*CFTMKKRMKSSKFLSNSENW 1136
            +TN        D+CG +   S +   Y LTF DDFS+M+  + +K +   S+ ++  + +
Sbjct: 511  NTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNK---SEVITKFKIF 567

Query: 1137 FKY--KKMHVKIKYLRSDNGGEYLSNEFIKLYERKWIERKLIVPFTPQQNGVAERKNMTL 1310
              Y   +   +IK LR+D GGE+LS EFIKL +   I  ++  P++PQQNGVAER+N TL
Sbjct: 568  KPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPYSPQQNGVAERRNRTL 627

Query: 1311 VEMIMSLIFGSKMSSK*W 1364
            VEM  S+I   K+S+K W
Sbjct: 628  VEMARSMIEEKKLSNKFW 645



 Score = 52.0 bits (123), Expect(2) = 2e-33
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +2

Query: 1367 ETTLTANHILNLIPRRELN-WITSYEVWNK*KPLISHLRVFGCLCYCHIPN 1516
            E   T+ ++ N +P + L   +T  E+W+  KP + HL+VFGC+CY HIP+
Sbjct: 647  EAIATSTYLQNRLPSKSLEKGVTPMEIWSGKKPSVDHLKVFGCVCYIHIPD 697


>gb|EFA05312.1| hypothetical protein TcasGA2_TC015470 [Tribolium castaneum]
          Length = 2375

 Score =  117 bits (293), Expect(3) = 2e-33
 Identities = 75/238 (31%), Positives = 119/238 (50%), Gaps = 19/238 (7%)
 Frame = +3

Query: 708  ITQNKKIIIEGYE*NGIFAMRL-------VTIENFLT*EENNKLWHRRLGHINDSYLYKI 866
            I +N K++ EG   + ++ +         V   N      + KLWHRRLGH+++  L  +
Sbjct: 364  IKRNSKVLAEGKRIDNLYEICFEVENKCKVVCSNVCEVSASLKLWHRRLGHLSNKNLVTL 423

Query: 867  NKATTDGPVMNIKFLNCED------CILTKMHKLSFKPKTTNSTNI*------DICGSIF 1010
            +K       +NI+  NC +      C+ +K+ KL F  ++ N T         D+CG I 
Sbjct: 424  SKNNMVSG-LNIRNSNCNESQICEVCVKSKITKLPFGKRSDNKTTRVLELIHSDLCGPIT 482

Query: 1011 PISHDHK*YILTFTDDFSKMS*CFTMKKRMKSSKFLSNSENWFKYKKMHVKIKYLRSDNG 1190
            P +HD K Y LTF DD++     + +K + +  ++    E+         KI  L+ DNG
Sbjct: 483  PETHDGKRYFLTFLDDYTHFCVVYLLKSKSEVFEYFKCFESMVS-AMFGTKIATLKCDNG 541

Query: 1191 GEYLSNEFIKLYERKWIERKLIVPFTPQQNGVAERKNMTLVEMIMSLIFGSKMSSK*W 1364
             EYL N+ +   + K I  K  +P+TP+QNG AER N TL+E   ++I  S++S   W
Sbjct: 542  REYLPNDLVSFCKGKGIIIKTTIPYTPEQNGKAERLNRTLLEKARAMILESELSKDLW 599



 Score = 37.0 bits (84), Expect(3) = 2e-33
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
 Frame = +2

Query: 407 KESWYLDLGYNYHMIENKEMFQNLKFFNNYQYVRTTGEE-KLPMLGIDNINLTFEDN--- 574
           K  WY+D G   HM+ +KE   N++   +   +    +  KL    I ++N     N   
Sbjct: 265 KMKWYVDSGATDHMVNSKEHLTNVRKLESPVKICVAKDNVKLLATEIGDVNAVLRVNNTV 324

Query: 575 -QISLNNTYFVKGLRRNLISL 634
            + ++ N  +VK L+ NL+S+
Sbjct: 325 TRATIKNVLYVKNLKHNLLSV 345



 Score = 37.0 bits (84), Expect(3) = 2e-33
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +2

Query: 1367 ETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCYCHIP 1513
            E  L A ++ N  P   L  +T  E++   KP +++LRVFG + Y HIP
Sbjct: 601  EAILCAAYVTNRCPTSCLENVTPSEMFYGRKPNLNNLRVFGSVAYSHIP 649


>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
          Length = 1274

 Score =  107 bits (266), Expect(3) = 5e-33
 Identities = 73/215 (33%), Positives = 116/215 (53%), Gaps = 10/215 (4%)
 Frame = +3

Query: 750  NGIFAMRLVTIENF-LT*EENNK--LWHRRLGHINDSYLYKINKATTDGPVMNIKFLN-C 917
            N +F + + +IE   L  +E ++  LWH R GH+N   L  ++K      +  I  +N C
Sbjct: 414  NKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNVC 473

Query: 918  EDCILTKMHKLSF-KPKTTNSTNI*-----DICGSIFPISHDHK*YILTFTDDFSKMS*C 1079
            E CI  K  K  F K ++  +++       D+CG +   S     Y L FTDD S+MS  
Sbjct: 474  EGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWV 533

Query: 1080 FTMKKRMKSSKFLSNSENWFKYKKMHVKIKYLRSDNGGEYLSNEFIKLYERKWIERKLIV 1259
            + ++ + ++ +     +  F  K+    IK LR+D GGE+LSN+F    E + + R+L  
Sbjct: 534  YFLQSKAETFETFKKFKA-FVEKQSGKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTT 592

Query: 1260 PFTPQQNGVAERKNMTLVEMIMSLIFGSKMSSK*W 1364
            P++P+QNGVAERKN T+VEM  S++    +S+  W
Sbjct: 593  PYSPEQNGVAERKNRTVVEMARSMMKAKNLSNHFW 627



 Score = 42.7 bits (99), Expect(3) = 5e-33
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
 Frame = +2

Query: 197 TRTNQSKTSNRYYHICQRDNHNITMCYFNAK*PNFKRRRMPRSVQNNEANITKNFDDQTY 376
           T  N++K++ + Y+ C+R  H    C+        K+ R     Q  +AN  +  +DQ  
Sbjct: 245 TEKNRNKSNIQCYY-CKRFGHVQXECW--------KKER-----QEKQANYVEQEEDQVK 290

Query: 377 VFLTQKDS--DPKESWYLDLGYNYHMIENKEMFQNLKFFNNYQYVRTTGEEKLPML---G 541
           +F+   +        W+LD G + HM   K +F+ L    +++     G++K   +   G
Sbjct: 291 LFMXYNEEVVSSNNIWFLDSGCSNHMTGIKSLFKELD--ESHKLKVKLGDDKQVXVEGKG 348

Query: 542 IDNINLTFEDNQISLNNTYFVKGLRRNLISL 634
           I  +N     N   L N YF+  L +NL+S+
Sbjct: 349 IMAVN-NGHGNVKLLYNVYFIPSLTQNLLSV 378



 Score = 40.4 bits (93), Expect(3) = 5e-33
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +2

Query: 1367 ETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCY 1501
            E   TA ++LN+ P + +   T YE W   KP +SHL+VFG + Y
Sbjct: 629  EGVATAVYLLNISPTKAVLNRTPYEAWYGRKPWVSHLKVFGSVAY 673


>gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao]
          Length = 1318

 Score =  120 bits (302), Expect(2) = 7e-33
 Identities = 72/192 (37%), Positives = 108/192 (56%), Gaps = 8/192 (4%)
 Frame = +3

Query: 813  KLWHRRLGHINDSYLYKINKAT--TDGPVMNIKFLNCEDCILTKMHKLSF----KPKTTN 974
            +LWHRRLGHIN  ++  +       D P++      CE C+  K  +  F    + +T N
Sbjct: 457  RLWHRRLGHINYQFIKNMGSLNLVNDMPIITEVEKTCEVCLQGKQSRHPFPKQSQTRTAN 516

Query: 975  STNI*--DICGSIFPISHDHK*YILTFTDDFSKMS*CFTMKKRMKSSKFLSNSENWFKYK 1148
               +   DICG I  +S +   Y + F DDFS+    F +K++ ++ ++    +   + K
Sbjct: 517  RLQLIHTDICGPIGTLSLNGNKYFILFIDDFSRFCWIFFLKQKSEAIQYFMKFKVLVE-K 575

Query: 1149 KMHVKIKYLRSDNGGEYLSNEFIKLYERKWIERKLIVPFTPQQNGVAERKNMTLVEMIMS 1328
            +   KIK LRSDNG EY SNEF  L  ++ I++ L VP++PQQNGV+ERKN T++EMI  
Sbjct: 576  QTDQKIKALRSDNGSEYTSNEFKALLTQEGIKQFLTVPYSPQQNGVSERKNRTIMEMIRC 635

Query: 1329 LIFGSKMSSK*W 1364
            L+F  +M    W
Sbjct: 636  LLFEQQMPKYFW 647



 Score = 48.5 bits (114), Expect(2) = 7e-33
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +2

Query: 1397 NLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCYCHIP 1513
            NLIP   LN +T +EVW+  KP IS+++VFGC+ Y  +P
Sbjct: 659  NLIPTTALNSMTPFEVWHGYKPSISNVKVFGCIAYAQVP 697


>gb|EOY32548.1| Uncharacterized protein TCM_040529 [Theobroma cacao]
          Length = 1266

 Score =  119 bits (299), Expect(2) = 2e-32
 Identities = 74/192 (38%), Positives = 107/192 (55%), Gaps = 8/192 (4%)
 Frame = +3

Query: 813  KLWHRRLGHINDSYLYKINKAT--TDGPVMNIKFLNCEDCILTKMHKLSF-KPKTTNSTN 983
            +LWHRRLGHIN  ++  +       D PV+      CE C+  K  +  F K   T +TN
Sbjct: 457  RLWHRRLGHINYQFIKNMGSLNLVNDMPVITEVEKTCEVCLQGKQSRHPFPKQSQTRATN 516

Query: 984  I*-----DICGSIFPISHDHK*YILTFTDDFSKMS*CFTMKKRMKSSKFLSNSENWFKYK 1148
                   DICG I  +S +   Y + F DDFS+    F +K++ ++ ++    +   + K
Sbjct: 517  RLQLIHTDICGPIGTLSLNGNKYFILFIDDFSRFCWIFFLKQKSEAIQYFMKFKVLVE-K 575

Query: 1149 KMHVKIKYLRSDNGGEYLSNEFIKLYERKWIERKLIVPFTPQQNGVAERKNMTLVEMIMS 1328
            +   KIK LRSDNG EY SNEF  L  ++ I++ L V ++PQQNGV+ERKN T++EMI  
Sbjct: 576  QTDQKIKALRSDNGSEYTSNEFKALLTQEGIKQFLTVTYSPQQNGVSERKNRTIMEMIRC 635

Query: 1329 LIFGSKMSSK*W 1364
            L+F  +M    W
Sbjct: 636  LLFEQQMPKYFW 647



 Score = 48.5 bits (114), Expect(2) = 2e-32
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +2

Query: 1397 NLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCYCHIP 1513
            NLIP   LN +T +EVW+  KP IS+++VFGC+ Y  +P
Sbjct: 659  NLIPTTALNSMTPFEVWHGYKPSISNVKVFGCIAYAQVP 697


>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
          Length = 1472

 Score =  106 bits (264), Expect(3) = 2e-31
 Identities = 73/215 (33%), Positives = 115/215 (53%), Gaps = 10/215 (4%)
 Frame = +3

Query: 750  NGIFAMRLVTIENF-LT*EENNK--LWHRRLGHINDSYLYKINKATTDGPVMNIKFLN-C 917
            N +F + + +IE   L  +E ++  LWH R GH+N   L  ++K      +  I  +N C
Sbjct: 399  NKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNVC 458

Query: 918  EDCILTKMHKLSF-KPKTTNSTNI*-----DICGSIFPISHDHK*YILTFTDDFSKMS*C 1079
            E CI  K  K  F K ++  +++       D+CG +   S     Y L FTDD S+MS  
Sbjct: 459  EGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWV 518

Query: 1080 FTMKKRMKSSKFLSNSENWFKYKKMHVKIKYLRSDNGGEYLSNEFIKLYERKWIERKLIV 1259
            + ++ + ++ +     +  F  K+    IK LR+D GGE+LSN+F    E + + R+L  
Sbjct: 519  YFLQSKAETFETFKKFKA-FVEKQSGKCIKVLRTDRGGEFLSNDFKVFXEEEGLHRELTT 577

Query: 1260 PFTPQQNGVAERKNMTLVEMIMSLIFGSKMSSK*W 1364
            P++P QNGVAERKN T+VEM  S++    +S+  W
Sbjct: 578  PYSPXQNGVAERKNRTVVEMARSMMKAKNLSNHFW 612



 Score = 40.4 bits (93), Expect(3) = 2e-31
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +2

Query: 1367 ETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCY 1501
            E   TA ++LN+ P + +   T YE W   KP +SHL+VFG + Y
Sbjct: 614  EGVATAVYLLNISPTKAVLNRTPYEAWYGRKPWVSHLKVFGSVAY 658



 Score = 38.1 bits (87), Expect(3) = 2e-31
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
 Frame = +2

Query: 329 QNNEANITKNFDDQTYVFLTQKDS--DPKESWYLDLGYNYHMIENKEMFQNLKFFNNYQY 502
           Q  +AN  +  +DQ  +F+   +        W+LD G + HM   K +F+ L    +++ 
Sbjct: 260 QEKQANYVEQEEDQVKLFMAYNEEVVSSNNIWFLDSGCSNHMTGIKSLFKELD--ESHKL 317

Query: 503 VRTTGEEKLPML---GIDNINLTFEDNQISLNNTYFVKGLRRNLISL 634
               G++K   +   G   +N     N   L N YF+  L +NL+S+
Sbjct: 318 KVKLGDDKQVQVEGKGTXAVN-NGHGNVKLLYNVYFIPSLTQNLLSV 363


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 95.1 bits (235), Expect(3) = 3e-31
 Identities = 65/229 (28%), Positives = 112/229 (48%), Gaps = 9/229 (3%)
 Frame = +3

Query: 705  RITQNKKIIIEGYE*NGIFAMRLVTIENFLT*EENN--KLWHRRLGHINDSYLYKINKAT 878
            R+++   ++++G   +GI+ +   ++      EE+N  +LWHRRLGH+++  L  ++K  
Sbjct: 708  RVSKGALVVMKGRLQHGIYTLMGSSVLGTAAVEEDNCTELWHRRLGHMSEKGLSILSKQG 767

Query: 879  TDGPVMNIKFLNCEDCILTKMHKLSFKPKTTNSTNI*-----DICGSIFPISHDHK*YIL 1043
                    K   CE C++ K  ++ F   +  +  +      D+ G     SH    Y +
Sbjct: 768  LLSGAETGKLKFCETCVMGKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYV 827

Query: 1044 TFTDDFSKMS*CFTMKKRMKSSKFLSNSENW--FKYKKMHVKIKYLRSDNGGEYLSNEFI 1217
            TF DDFS+    + +K +    +     + W     K+    +K LR+DNG E+ + +F 
Sbjct: 828  TFIDDFSRKVWVYFLKAK---DEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFD 884

Query: 1218 KLYERKWIERKLIVPFTPQQNGVAERKNMTLVEMIMSLIFGSKMSSK*W 1364
            +   ++ I R   V  TPQQNGVAER N TLV+    +   + +S K W
Sbjct: 885  EFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFW 933



 Score = 53.5 bits (127), Expect(3) = 3e-31
 Identities = 29/84 (34%), Positives = 45/84 (53%)
 Frame = +2

Query: 383 LTQKDSDPKESWYLDLGYNYHMIENKEMFQNLKFFNNYQYVRTTGEEKLPMLGIDNINLT 562
           LT   S   ESW LD G +YHM  ++++F   K +N    +   GE  L + G  ++ + 
Sbjct: 609 LTVSTSSSAESWILDTGASYHMAYSRDLFTTFKEWNGSVKLGDDGE--LGVKGSGSVQIK 666

Query: 563 FEDNQISLNNTYFVKGLRRNLISL 634
             D  +   N ++V GLR+NLIS+
Sbjct: 667 MYDGLVRTLNAWYVPGLRKNLISV 690



 Score = 35.4 bits (80), Expect(3) = 3e-31
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 1367 ETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCYCHI 1510
            E   TA +++N  P   +++ T  EVW+      S L++FGC  Y H+
Sbjct: 935  EAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHV 982


>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
          Length = 701

 Score = 97.8 bits (242), Expect(3) = 3e-31
 Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 17/236 (7%)
 Frame = +3

Query: 708  ITQNKKIIIEGYE*NGIFAMRLVTIENFLT*E--------ENNKLWHRRLGHINDSYLYK 863
            +++N   + +GY  +G+F + ++T++  +  +        E++ +WH RLGH+N + L K
Sbjct: 417  LSKNGMYVGKGYVNDGLFKLNVMTLKPTINNKATSSAYLLESSNIWHGRLGHVNFNSLRK 476

Query: 864  -INKATTDGPVMNIKFLNCEDCILTKMHKLSFKPKTTNSTNI*----DICGSIFPISHDH 1028
             IN        +++K   C+ C+  K+ + SF+    NS  +     DIC      +   
Sbjct: 477  LINMKHIPNFQIDLKH-KCKTCVEAKLTRSSFQIIQRNSEPLDLIHSDICDFKSIQTRGG 535

Query: 1029 K*YILTFTDDFSKMS*CFTMKKRMKS-SKFL---SNSENWFKYKKMHVKIKYLRSDNGGE 1196
              Y +TF DD +K    + +K + ++  KF+   +  EN     +++ KIK LRSD GGE
Sbjct: 536  NKYFITFIDDCTKYCYVYLLKSKDEALDKFILYKNEVEN-----QLNRKIKELRSDRGGE 590

Query: 1197 YLSNEFIKLYERKWIERKLIVPFTPQQNGVAERKNMTLVEMIMSLIFGSKMSSK*W 1364
            Y+   F+ L E+  I  ++  P++PQ NG+AERKN TL EM+ +++  S +    W
Sbjct: 591  YVV-PFMSLCEQSGIIHQVTAPYSPQSNGIAERKNRTLKEMMNAMLISSGLPQNMW 645



 Score = 45.8 bits (107), Expect(3) = 3e-31
 Identities = 23/52 (44%), Positives = 31/52 (59%)
 Frame = +2

Query: 1358 MMDETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCYCHIP 1513
            M  E  L+AN++LN IPR++ N  T YE+W    P    LRV+GCL    +P
Sbjct: 644  MWGEAVLSANYLLNKIPRKQEN-TTPYELWKGRSPSYKFLRVWGCLAKVVVP 694



 Score = 40.4 bits (93), Expect(3) = 3e-31
 Identities = 30/143 (20%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
 Frame = +2

Query: 209 QSKTSNRYYHICQRDNHNITMCYFNAK*PNFKRRRMPRSVQNNEANITKNFDDQTYVFLT 388
           Q+K   + Y+ C +  H  + C         K++R    V+N   +++        + + 
Sbjct: 264 QTKFQGKCYN-CDKMGHKASDCRLP------KKKREANVVENITQHVSDINLSAVVLEVN 316

Query: 389 QKDSDPKESWYLDLGYNYHMIENKEMFQNLKFFNNYQ--YVRTTGEEKLPMLGIDNINLT 562
              S+P+E W++D G   H+  +K +F + +  +N +  ++  +   ++   G   + +T
Sbjct: 317 MVGSNPRE-WWIDTGATRHVCSDKGLFTSFEAASNREKLFMGNSATSEIEGQGKVALKMT 375

Query: 563 FEDNQISLNNTYFVKGLRRNLIS 631
               +++LNN  +V  +R+NL+S
Sbjct: 376 -SGKELTLNNVLYVPEIRKNLVS 397


>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
          Length = 1430

 Score =  106 bits (265), Expect(3) = 7e-31
 Identities = 78/241 (32%), Positives = 125/241 (51%), Gaps = 14/241 (5%)
 Frame = +3

Query: 684  TQGNIYCRITQNKK----IIIEGYE*NGIFAMRLVTIENF-LT*EENNK--LWHRRLGHI 842
            T+  + C  T +KK    I+      N +F + + +IE   L  +E ++  LWH R GH+
Sbjct: 499  TEKLVKCGATYDKKSDQIIVDVRMAANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHL 558

Query: 843  NDSYLYKINKATTDGPVMNIKFLN-CEDCILTKMHKLSF-KPKTTNSTNI*-----DICG 1001
            N   L  ++K      +  I  +N CE CI  K  K  F K ++  +++       D+CG
Sbjct: 559  NVKGLKLLSKKEMVFELPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCG 618

Query: 1002 SIFPISHDHK*YILTFTDDFSKMS*CFTMKKRMKSSKFLSNSENWFKYKKMHVKIKYLRS 1181
             +   S     Y L FTDD S+MS  + ++ + ++ +     +  F  K+    IK LR+
Sbjct: 619  PMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKA-FVEKQSGKCIKVLRT 677

Query: 1182 DNGGEYLSNEFIKLYERKWIERKLIVPFTPQQNGVAERKNMTLVEMIMSLIFGSKMSSK* 1361
            D  GE+LSN+F    E + + R+L  P++P+QNGVAERKN T+VEM  S++    +S+  
Sbjct: 678  DRXGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSMMXAKNLSNHF 737

Query: 1362 W 1364
            W
Sbjct: 738  W 738



 Score = 40.4 bits (93), Expect(3) = 7e-31
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +2

Query: 1367 ETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCY 1501
            E   TA ++LN+ P + +   T YE W   KP +SHL+VFG + Y
Sbjct: 740  EGVATAVYLLNISPTKAVLNRTPYEAWYGRKPWVSHLKVFGSVAY 784



 Score = 35.8 bits (81), Expect(3) = 7e-31
 Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
 Frame = +2

Query: 248 RDNHNITMCYFNAK*PNFKRRRMPRSVQNNEANITKNFDDQTYVFLTQKDS--DPKESWY 421
           R+  NI  CY+  +  + +     +  Q  +AN  +  +DQ  +F+   +        W+
Sbjct: 376 RNKSNIX-CYYCKRFGHVQAECWKKERQEKQANYVEQEEDQVKLFMAYNEEVVSSNNIWF 434

Query: 422 LDLGYNYHMIENKEMFQNLKFFNNYQYVRTTGEEKLPMLGIDNINLTFEDNQIS-LNNTY 598
           LD G + HM   K +F+ L   ++   V+   + ++ + G   + +      +  L N Y
Sbjct: 435 LDSGCSNHMTGIKSLFKELD-ESHKLXVKLGDDXQVQVEGKGTVAVNNGHGNVKLLYNVY 493

Query: 599 FVKGLRRNLI 628
           F+  L   L+
Sbjct: 494 FIPSLTEKLV 503


>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 822

 Score =  109 bits (272), Expect(3) = 1e-30
 Identities = 80/241 (33%), Positives = 121/241 (50%), Gaps = 11/241 (4%)
 Frame = +3

Query: 675  YQDTQGNIYCRITQN-KKIIIEGYE*NGIFAMRLVTIEN--FLT*EENNKLWHRRLGHIN 845
            YQ T  N YC I  + +K I E    N  F +R ++ E    +  +E  +LWH+RLGH  
Sbjct: 109  YQVTLKNNYCTIHDSARKKIGEVEMVNKSFHLRWLSNEETAMVAKDEATELWHKRLGHTG 168

Query: 846  DSYL--YKINKATTDGPVMNIKFLNCEDCILTKMHKLSFKPKTTNSTNI*------DICG 1001
             S L   +  +  T  P  N++   CE CIL+K  +  F  ++             D+CG
Sbjct: 169  HSNLKILQSKEMVTGLPKFNVEEGKCESCILSKHSRDPFPKESETRAKHKLELIHSDVCG 228

Query: 1002 SIFPISHDHK*YILTFTDDFSKMS*CFTMKKRMKSSKFLSNSENWFKYKKMHVKIKYLRS 1181
             +   S +   YILTF DD ++M   + +K + +  +     +N  +    + +IK LR 
Sbjct: 229  PMQNSSINGSRYILTFIDDATRMVWVYFLKAKSEVFQTFKKFKNLVE-NNANCRIKKLRI 287

Query: 1182 DNGGEYLSNEFIKLYERKWIERKLIVPFTPQQNGVAERKNMTLVEMIMSLIFGSKMSSK* 1361
            D G EYLS EF +  E   IER+L   ++PQQN V+ER+N +LVEM  ++I    +  K 
Sbjct: 288  DRGTEYLSKEFSEFLEGNGIERQLTAAYSPQQNEVSERRNRSLVEMARAMIKAKDLPLKL 347

Query: 1362 W 1364
            W
Sbjct: 348  W 348



 Score = 47.4 bits (111), Expect(3) = 1e-30
 Identities = 21/55 (38%), Positives = 31/55 (56%)
 Frame = +2

Query: 1352 IQMMDETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCYCHIPN 1516
            +++  E    A +  N  P R L   T  E W+  KP +SH++VFG +CY HIP+
Sbjct: 345  LKLWAEAVHVAAYAQNRTPTRTLKNKTPLEAWSDSKPSVSHMKVFGSICYVHIPD 399



 Score = 25.8 bits (55), Expect(3) = 1e-30
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = +2

Query: 392 KDSDPKESWYLDLGYNYHMIENKEMFQNLKFFNNYQYVRTTGEEKLPML-GIDNINLTFE 568
           K+     +W +D G   HM  N+++F   K   +++     G   + M  G  +I +   
Sbjct: 22  KEPSGGNTWLIDSGCTNHMTPNEKLF--TKINRDFKVPIRVGNGAVMMSEGKGDIEVMTR 79

Query: 569 DNQISLNNTYFVKGLRRNLIS---LYVQTYHR*LSVNY 673
            ++  + +   V  L +NL+S   + +  Y   L  NY
Sbjct: 80  KDKRGIRDVLLVPKLGKNLLSVPQMIINGYQVTLKNNY 117


>emb|CAN76821.1| hypothetical protein VITISV_017285 [Vitis vinifera]
          Length = 672

 Score =  116 bits (291), Expect(2) = 1e-30
 Identities = 76/216 (35%), Positives = 117/216 (54%), Gaps = 11/216 (5%)
 Frame = +3

Query: 750  NGIFAMRLVTIENFLT*EENNK--LWHRRLGHINDSYLYKINKA--TTDGPVMNIKFLNC 917
            N +F +++ ++++FL  E  +   LWH R GH+N   L  + +    T  P ++I    C
Sbjct: 293  NRLFPLKIDSVQSFLMAEVKDLSWLWHLRYGHLNFGGLKTLQQKHMVTGLPQISIPSQVC 352

Query: 918  EDCILTKMHKLSF-KPKTTNSTNI*-----DICGSIFPISHDHK*YILTFTDDFSKMS*C 1079
            E+C++ K H+  F + K+  + N+      DICG I P S+  K Y++ F DD+S+ +  
Sbjct: 353  EECVVGKQHRSQFPQGKSRRAKNVLELVHSDICGLINPTSNGGKKYLIIFIDDYSRKTWV 412

Query: 1080 -FTMKKRMKSSKFLSNSENWFKYKKMHVKIKYLRSDNGGEYLSNEFIKLYERKWIERKLI 1256
             F  +K    S F S      K     +KI  LR+D GGEY SNEF    + + I R+L 
Sbjct: 413  SFLQEKSEAFSAFKSFKARVEKETGRSIKI--LRTDRGGEYCSNEFEHFCDDQGIRRELT 470

Query: 1257 VPFTPQQNGVAERKNMTLVEMIMSLIFGSKMSSK*W 1364
              +TPQQNGV+ERKN T++ M+ SL+   K+    W
Sbjct: 471  AAYTPQQNGVSERKNRTILNMVRSLLARGKIPKSFW 506



 Score = 45.1 bits (105), Expect(2) = 1e-30
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +2

Query: 1388 HILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCYCHIPN 1516
            H+LN      +  +T  E W+  KP+++H ++FGC+ Y H+PN
Sbjct: 515  HVLNKSLTFSVQNMTPEEAWSGRKPVVNHFKIFGCIAYAHVPN 557


>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
          Length = 1471

 Score =  117 bits (293), Expect(2) = 3e-30
 Identities = 75/201 (37%), Positives = 108/201 (53%), Gaps = 13/201 (6%)
 Frame = +3

Query: 801  EENNKLWHRRLGHINDSYLYKINKATTDGPVMNIKFLN--CEDCILTKMHKLSFKPKTTN 974
            E+   LWH R GH++   L ++ K      + N+ +    CE+C+L+K  + SF  K   
Sbjct: 483  EDKASLWHLRFGHLHHGGLKELAKKNMVHGLPNMDYEGKFCEECVLSKHVRTSFPKKAQY 542

Query: 975  STNI*------DICGSIFPISHDHK*YILTFTDDFSKMS*CFTMKKRMKSSKFLSNSENW 1136
                       DICG I P S   K Y +TF DDFS+ +  + +K+  KS  F    E +
Sbjct: 543  WAKQPLELIHTDICGPITPESFSGKRYFITFIDDFSRKTWVYFLKE--KSEAF----EVF 596

Query: 1137 FKYKKM-----HVKIKYLRSDNGGEYLSNEFIKLYERKWIERKLIVPFTPQQNGVAERKN 1301
             K+K M       +IK +RSD GGEY S  F++  E + I R L  P+TPQQNGVAERKN
Sbjct: 597  KKFKVMVERTTDKQIKAVRSDRGGEYTSTTFMEYCEEQGIRRFLTAPYTPQQNGVAERKN 656

Query: 1302 MTLVEMIMSLIFGSKMSSK*W 1364
             T+++M+ S++   KM  + W
Sbjct: 657  RTILDMVRSMLKSKKMPKEFW 677



 Score = 43.1 bits (100), Expect(2) = 3e-30
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +2

Query: 1367 ETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCYCHIPN 1516
            E    A ++ N  P  +L+  T  E W+  KP +SHL+VFG + Y H+P+
Sbjct: 679  EAVQCAIYVQNRCPHVKLDDQTPQEAWSGQKPTVSHLKVFGSVAYAHVPD 728


>gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
          Length = 1034

 Score = 93.6 bits (231), Expect(3) = 6e-30
 Identities = 68/223 (30%), Positives = 106/223 (47%), Gaps = 14/223 (6%)
 Frame = +3

Query: 738  GYE*NGIFAMRLVTIENFL----T*EENNKLWHRRLGHINDSYLYKINKATTDGPVMNIK 905
            GY  NG+F + +  + N +    + + +  LWH RLGH++   + +++K     P  ++ 
Sbjct: 369  GYFCNGMFMLNINKVVNSIYMACSSKNDTSLWHARLGHVHYKGMIEMSKEGLI-PTFDVN 427

Query: 906  FLNCEDCILTKMHKLSFKPKTTNSTNI*----DICGSIFPISHDHK*YILTFTDDFSKMS 1073
               C  C+LTK+ +  FK    NS  +     D+C      S  +K Y +TF DD+S+  
Sbjct: 428  IEKCRTCMLTKIIRQPFKSIERNSKVLELIHSDLCDIHATSSLGNKKYFITFIDDYSRF- 486

Query: 1074 *CFTMKKRMKSSKFLSNSENWFKYKKMHVK------IKYLRSDNGGEYLSNEFIKLYERK 1235
             C+      K           FK  K  V+      +K LR+D GGEY    +   ++  
Sbjct: 487  -CYVYLLHAKDEALEK-----FKVYKTEVELQHSDLVKKLRTDRGGEYYDPTY---FQSV 537

Query: 1236 WIERKLIVPFTPQQNGVAERKNMTLVEMIMSLIFGSKMSSK*W 1364
             I  +   P+TPQQNGV ERKN  L EM+ S++  S +S   W
Sbjct: 538  GIIHETTAPYTPQQNGVFERKNRVLKEMVNSMLSYSGLSDGFW 580



 Score = 46.2 bits (108), Expect(3) = 6e-30
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = +2

Query: 1367 ETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCYCHIP 1513
            E  LTA ++LN +P +  N IT YE+W K KP +++LRV+GC     +P
Sbjct: 582  EAMLTACYLLNRVPNKR-NKITPYELWYKKKPNLNYLRVWGCRAIVRLP 629



 Score = 40.0 bits (92), Expect(3) = 6e-30
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +2

Query: 401 DPKESWYLDLGYNYHMIENKEMFQNLKFFNNYQYVRTTGEEKLPMLGIDNINLTFEDNQ- 577
           D + +W++D G   H+ +++  F+  +   +   +    E   P+LG   + L F   + 
Sbjct: 262 DDEVAWWIDSGATIHVCKDRGWFKTYEPVQDGSVLYMGNESTAPILGRGKVVLEFSSGKT 321

Query: 578 ISLNNTYFVKGLRRNLIS 631
           + LN+   V G+R+NL+S
Sbjct: 322 LDLNDVIHVPGIRKNLVS 339


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  114 bits (284), Expect(2) = 1e-29
 Identities = 74/202 (36%), Positives = 108/202 (53%), Gaps = 14/202 (6%)
 Frame = +3

Query: 801  EENNKLWHRRLGHINDSYLYKIN-KATTDG-PVMNIKFLNCEDCILTKMHKLSFKPKTTN 974
            +E + LWH R GH+N   L  ++ K    G P +N     CE C+L K  K+SF  ++++
Sbjct: 462  KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSS 521

Query: 975  STNI*------DICGSIFPISHDHK*YILTFTDDFSKMS*CFTMKKRMKSSKFLSNSENW 1136
                       D+CG I P S     Y L F DDFS+ +  + +K++ +  +        
Sbjct: 522  RAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEI------- 574

Query: 1137 FKYKKMHVK------IKYLRSDNGGEYLSNEFIKLYERKWIERKLIVPFTPQQNGVAERK 1298
            FK  K HV+      IK +RSD GGE+ S EF+K  E   I R+L VP +PQQNGVAERK
Sbjct: 575  FKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERK 634

Query: 1299 NMTLVEMIMSLIFGSKMSSK*W 1364
            N T++EM  S++   ++  + W
Sbjct: 635  NRTILEMARSMLKSKRLPKELW 656



 Score = 44.7 bits (104), Expect(2) = 1e-29
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = +2

Query: 1355 QMMDETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCYCHIPN 1516
            ++  E    A ++LN  P + ++  T  E W+  KP +SHLRVFG + + H+P+
Sbjct: 654  ELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPD 707


>emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera]
          Length = 1109

 Score = 95.9 bits (237), Expect(3) = 2e-29
 Identities = 70/215 (32%), Positives = 107/215 (49%), Gaps = 10/215 (4%)
 Frame = +3

Query: 750  NGIFAMRLVTIENF-LT*EENNK--LWHRRLGHINDSYLYKINKATTDGPVMNIKFLN-C 917
            N +F + + +IE   L  +E ++  LWH R GH+N   L  ++K      +  I  +N C
Sbjct: 400  NKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNVC 459

Query: 918  EDCILTKMHKLSF-KPKTTNSTNI*-----DICGSIFPISHDHK*YILTFTDDFSKMS*C 1079
            E CI  K  K  F K ++  +++       D+CG +   S     Y L FTDD S+MS  
Sbjct: 460  EGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQIASFGGSRYFLLFTDDHSRMS-- 517

Query: 1080 FTMKKRMKSSKFLSNSENWFKYKKMHVKIKYLRSDNGGEYLSNEFIKLYERKWIERKLIV 1259
                              W  +    ++ K LR+D GGE+LSN+F    E + + R+L  
Sbjct: 518  ------------------WVYF----LQSKVLRTDRGGEFLSNDFKVFCEEEGLHRELTT 555

Query: 1260 PFTPQQNGVAERKNMTLVEMIMSLIFGSKMSSK*W 1364
            P++P+QNGV ERKN T+VEM  S++    +S+  W
Sbjct: 556  PYSPEQNGVVERKNRTVVEMARSMMKAKNLSNHFW 590



 Score = 41.6 bits (96), Expect(3) = 2e-29
 Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
 Frame = +2

Query: 248 RDNHNITMCYFNAK*PNFKRRRMPRSVQNNEANITKNFDDQTYVFLTQKDS--DPKESWY 421
           R+  NI  CY+  +  + +     +  Q  +AN  +  +DQ  +F+   +        W+
Sbjct: 235 RNKSNI-QCYYCKRFGHVQAECWKKERQEKQANYVEQEEDQVKLFMAYNEEVVXSNNIWF 293

Query: 422 LDLGYNYHMIENKEMFQNLKFFNNYQYVRTTGEEKLPMLGIDNINLTFEDNQIS-LNNTY 598
           LD G + HM   K +F+ L   +  + V+   ++++ + G   + +      +  L N Y
Sbjct: 294 LDSGCSNHMTGIKSLFKELDESHKLK-VKLGDDKQVXVEGKGTVAVNNGHGNVKLLYNVY 352

Query: 599 FVKGLRRNLISL 634
           F+  L +NL+S+
Sbjct: 353 FIPSLTQNLLSV 364



 Score = 40.4 bits (93), Expect(3) = 2e-29
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +2

Query: 1367 ETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCY 1501
            E   TA ++LN+ P + +   T YE W   KP +SHL+VFG + Y
Sbjct: 592  EGVATAVYLLNISPTKAVLNRTPYEAWYGRKPWVSHLKVFGSVAY 636


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  112 bits (280), Expect(2) = 3e-29
 Identities = 73/202 (36%), Positives = 107/202 (52%), Gaps = 14/202 (6%)
 Frame = +3

Query: 801  EENNKLWHRRLGHINDSYLYKIN-KATTDG-PVMNIKFLNCEDCILTKMHKLSFKPKTTN 974
            +E + LWH R GH+N   L  ++ K    G P +N     CE C+L K  K+SF  ++++
Sbjct: 462  KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSS 521

Query: 975  STNI*------DICGSIFPISHDHK*YILTFTDDFSKMS*CFTMKKRMKSSKFLSNSENW 1136
                       D+CG I P S     Y L F DDFS+ +  + +K++ +  +        
Sbjct: 522  RAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEI------- 574

Query: 1137 FKYKKMHVK------IKYLRSDNGGEYLSNEFIKLYERKWIERKLIVPFTPQQNGVAERK 1298
            FK  K HV+      IK +RSD GGE+ S EF+K  E   I R+L VP +PQQNGV ERK
Sbjct: 575  FKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERK 634

Query: 1299 NMTLVEMIMSLIFGSKMSSK*W 1364
            N T++EM  S++   ++  + W
Sbjct: 635  NRTILEMARSMLKSKRLPKELW 656



 Score = 44.7 bits (104), Expect(2) = 3e-29
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = +2

Query: 1355 QMMDETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCYCHIPN 1516
            ++  E    A ++LN  P + ++  T  E W+  KP +SHLRVFG + + H+P+
Sbjct: 654  ELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPD 707


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  112 bits (280), Expect(2) = 3e-29
 Identities = 73/202 (36%), Positives = 107/202 (52%), Gaps = 14/202 (6%)
 Frame = +3

Query: 801  EENNKLWHRRLGHINDSYLYKIN-KATTDG-PVMNIKFLNCEDCILTKMHKLSFKPKTTN 974
            +E + LWH R GH+N   L  ++ K    G P +N     CE C+L K  K+SF  ++++
Sbjct: 462  KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSS 521

Query: 975  STNI*------DICGSIFPISHDHK*YILTFTDDFSKMS*CFTMKKRMKSSKFLSNSENW 1136
                       D+CG I P S     Y L F DDFS+ +  + +K++ +  +        
Sbjct: 522  RAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEI------- 574

Query: 1137 FKYKKMHVK------IKYLRSDNGGEYLSNEFIKLYERKWIERKLIVPFTPQQNGVAERK 1298
            FK  K HV+      IK +RSD GGE+ S EF+K  E   I R+L VP +PQQNGV ERK
Sbjct: 575  FKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERK 634

Query: 1299 NMTLVEMIMSLIFGSKMSSK*W 1364
            N T++EM  S++   ++  + W
Sbjct: 635  NRTILEMARSMLKSKRLPKELW 656



 Score = 44.7 bits (104), Expect(2) = 3e-29
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = +2

Query: 1355 QMMDETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCYCHIPN 1516
            ++  E    A ++LN  P + ++  T  E W+  KP +SHLRVFG + + H+P+
Sbjct: 654  ELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPD 707


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  112 bits (280), Expect(2) = 3e-29
 Identities = 73/202 (36%), Positives = 108/202 (53%), Gaps = 14/202 (6%)
 Frame = +3

Query: 801  EENNKLWHRRLGHINDSYLYKIN-KATTDG-PVMNIKFLNCEDCILTKMHKLSFKPKTTN 974
            +E + LWH R GH+N   L  ++ K    G P +N     CE C+L    K+SF  ++++
Sbjct: 462  KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSS 521

Query: 975  STNI*------DICGSIFPISHDHK*YILTFTDDFSKMS*CFTMKKRMKSSKFLSNSENW 1136
                       D+CG I P S     Y L F DDFS+ +  + +K++ +  +        
Sbjct: 522  RAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEI------- 574

Query: 1137 FKYKKMHVK------IKYLRSDNGGEYLSNEFIKLYERKWIERKLIVPFTPQQNGVAERK 1298
            FK  K HV+      IK +RSD+GGE+ S EF+K  E   I R+L VP +PQQNGVAERK
Sbjct: 575  FKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERK 634

Query: 1299 NMTLVEMIMSLIFGSKMSSK*W 1364
            N T++EM  S++   ++  + W
Sbjct: 635  NRTILEMARSMLKSKRLPKELW 656



 Score = 44.7 bits (104), Expect(2) = 3e-29
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = +2

Query: 1355 QMMDETTLTANHILNLIPRRELNWITSYEVWNK*KPLISHLRVFGCLCYCHIPN 1516
            ++  E    A ++LN  P + ++  T  E W+  KP +SHLRVFG + + H+P+
Sbjct: 654  ELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPD 707


>prf||1107279B ORF g
          Length = 1410

 Score =  105 bits (261), Expect(2) = 7e-29
 Identities = 71/203 (34%), Positives = 106/203 (52%), Gaps = 15/203 (7%)
 Frame = +3

Query: 801  EENNKLWHRRLGHINDSYLYKINKAT--TDGPVMNIKFLNCE---DCILTKMHKLSFKPK 965
            + N +LWH R GHI+D  L +I +    +D  ++N   L+CE    C+  K  +L FK +
Sbjct: 413  KNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFK-Q 471

Query: 966  TTNSTNI*--------DICGSIFPISHDHK*YILTFTDDFSKMS*CFTMKKRMKSSKFLS 1121
              + T+I         D+CG I P++ D K Y + F D F+    C T   + KS  F S
Sbjct: 472  LKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHY--CVTYLIKYKSDVF-S 528

Query: 1122 NSENWFKYKKMH--VKIKYLRSDNGGEYLSNEFIKLYERKWIERKLIVPFTPQQNGVAER 1295
              +++    + H  +K+ YL  DNG EYLSNE  +   +K I   L VP TPQ NGV+ER
Sbjct: 529  MFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSER 588

Query: 1296 KNMTLVEMIMSLIFGSKMSSK*W 1364
               T+ E   +++ G+K+    W
Sbjct: 589  MIRTITEKARTMVSGAKLDKSFW 611



 Score = 50.8 bits (120), Expect(2) = 7e-29
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = +2

Query: 1367 ETTLTANHILNLIPRREL--NWITSYEVWNK*KPLISHLRVFGCLCYCHIPN 1516
            E  LTA +++N IP R L  +  T YE+W+  KP + HLRVFG   Y HI N
Sbjct: 613  EAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKN 664