BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00019499
         (827 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF04760.1|AF103808_1 helix-loop-helix protein 1A [Pinus taeda]     85   3e-14

>gb|AAF04760.1|AF103808_1 helix-loop-helix protein 1A [Pinus taeda]
          Length = 551

 Score = 85.1 bits (209), Expect = 3e-14
 Identities = 77/272 (28%), Positives = 130/272 (47%), Gaps = 29/272 (10%)
 Frame = -3

Query: 744 DSNGVQVV-----LDTETHNRAQYMQN------LD-RQEMAHESHTNGMM-LSSIPLPNN 604
           D NG+Q+      +D+E   + Q   N      LD +  + + S  +G+M L+     NN
Sbjct: 29  DVNGIQISFSQYPMDSEKMPQMQQQTNNVDFMDLDYKPPLCNVSQADGVMALTERGSSNN 88

Query: 603 FQVSAGLMRYHSAPGSFLAALIDNGANVISHE----NGMSQILSNDSSVAS-----VSQH 451
           FQ   GLMRYHSAP SF ++L +   N I  E    N  + + SN   +       +S H
Sbjct: 89  FQGPTGLMRYHSAPSSFFSSLGEEENNNIISEYFSGNSSNPLQSNTKPLQQNQPSILSFH 148

Query: 450 NDANQKLESEQEQNNYSKIASHLRR------SSGSGRDDFAKHNNQLAPIIEHGMEMPQN 289
              N+  +   E+N  S+   H              R+D  KH+  L  I+E+  ++ Q+
Sbjct: 149 LRENEPAKHLGERNEISEKEMHASSLPSKEVQGNVSREDLGKHH-PLDAILENVPDVSQD 207

Query: 288 NYSSSEMTMLYHQTQGSQSGGENVVNNNKLKSENAIYSDLESCSVKYPLPR-NKHSLCRQ 112
           ++ +S+M+++  Q Q S+  G+++ ++ ++ S      D     +       +K++L R 
Sbjct: 208 SFGTSQMSLM-SQVQVSEPSGQHIDSSYQMNSVCCDTLDQSGGRMGNAYSSTSKNTLIRH 266

Query: 111 SSSPVGVLSRLAASAQGITENGYLEGMPNEQI 16
           SSSP G+LS L A  +G  E+G++EG     I
Sbjct: 267 SSSPAGLLSELVAEGRGTFESGFMEGTVRNSI 298