BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00019203
         (616 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   217   2e-54
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   207   2e-51
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 207   2e-51
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   204   2e-50
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   202   8e-50
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   202   8e-50
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   201   1e-49
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   201   1e-49
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   201   1e-49
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   199   4e-49
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   124   2e-26

>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
           gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
           replication protein; AltName: Full=156 kDa protein;
           AltName: Full=ORF1 protein; Includes: RecName:
           Full=RNA-directed RNA polymerase; Includes: RecName:
           Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
           [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  217 bits (552), Expect = 2e-54
 Identities = 110/196 (56%), Positives = 130/196 (66%)
 Frame = +1

Query: 28  IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDA 207
           I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P PVNPEDA
Sbjct: 372 ISRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDA 431

Query: 208 DTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTR 387
           D    F++FS    ++   T+   LE SAE+   HT LKV  + LS  QL A+H LG +R
Sbjct: 432 DISSRFQDFSRATNSTPKPTVEAVLEASAESPDHHTQLKVLCSALSEGQLEAIHALGHSR 491

Query: 388 LGGPLLPKITPDEQDSEXXXXXXXXXXXTKANATLNQGDHADQAPVNSDPATLPWVAWLP 567
            GGPLLP++T      E           ++A+   +     D  P   +P TLPWVAWLP
Sbjct: 492 CGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPASSNPSGPDAQPTAQNPETLPWVAWLP 551

Query: 568 KLNALGFEALEIQTDP 615
           KLNALGFEALE+Q DP
Sbjct: 552 KLNALGFEALEVQHDP 567


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 669

 Score =  207 bits (526), Expect = 2e-51
 Identities = 115/206 (55%), Positives = 133/206 (64%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1   RLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTR 180
           R+LRPL +   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFTR
Sbjct: 365 RILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTR 424

Query: 181 PHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLR 360
           P PVNP+DA+T  +F+ F   A A     +  +LE  AE    H SL++    LS  QL 
Sbjct: 425 PQPVNPDDAETTHSFQAFCQAAAA-----VETTLEQQAETPDEHQSLRLDCPTLSEHQLW 479

Query: 361 ALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXXTKANATLNQ-GDHADQAPVNSDP 537
           ALH+LG+ R GGPLLP+  PD   S            T A    +Q    A   P   DP
Sbjct: 480 ALHKLGNARCGGPLLPQ-RPD--TSTVVEPCPDLPPETHAAPEPSQRNTQAPNLPSPQDP 536

Query: 538 ATLPWVAWLPKLNALGFEALEIQTDP 615
            TLPWVAWLPKLNALGFEALEIQ DP
Sbjct: 537 TTLPWVAWLPKLNALGFEALEIQNDP 562


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  207 bits (526), Expect = 2e-51
 Identities = 113/205 (55%), Positives = 133/205 (64%)
 Frame = +1

Query: 1   RLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTR 180
           RLLRPLRAD+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGPPGF +PFTR
Sbjct: 365 RLLRPLRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLSPFTR 424

Query: 181 PHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLR 360
           P PVNP+DA+T  +FREF      S   T+ + LE S E+  +HTSLKV    LS EQL 
Sbjct: 425 PQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVTHTSLKVVPQSLSPEQLS 484

Query: 361 ALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXXTKANATLNQGDHADQAPVNSDPA 540
           ALHELG++R GGP+LPK + +                T  ++ L +  H    P      
Sbjct: 485 ALHELGNSRCGGPMLPKRSSNH---------------THTSSDLLRRRH----PRQQRST 525

Query: 541 TLPWVAWLPKLNALGFEALEIQTDP 615
             P  +   K   +GFEALEIQTDP
Sbjct: 526 NPPMGSLAAKAKRIGFEALEIQTDP 550


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  204 bits (519), Expect = 2e-50
 Identities = 117/213 (54%), Positives = 134/213 (62%), Gaps = 8/213 (3%)
 Frame = +1

Query: 1   RLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTR 180
           R+LRPL++ I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF R
Sbjct: 365 RMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFAR 424

Query: 181 PHPVNPEDADTMRAFREF---SYTAEASTPTTIADSLEGSAENLASHTSLKVGHADLSTE 351
           P PVNP+DA+T ++F+ F   + TAEA        +LE  AE    H SL +    L   
Sbjct: 425 PQPVNPDDAETTQSFQAFCQATITAEA--------ALEQQAETPDEHQSLSLKCPTLPEH 476

Query: 352 QLRALHELGSTRLGGPLLPK-----ITPDEQDSEXXXXXXXXXXXTKANATLNQGDHADQ 516
           QL ALHELG+TR GGPLLPK      T +                 K   TL+       
Sbjct: 477 QLWALHELGNTRCGGPLLPKGPAKLTTVEPCPDLPAENSANPEPPRKTTQTLD------- 529

Query: 517 APVNSDPATLPWVAWLPKLNALGFEALEIQTDP 615
            P   DP TLPWVAWLPKLNALGFEALEIQTDP
Sbjct: 530 LPHPEDPTTLPWVAWLPKLNALGFEALEIQTDP 562


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  202 bits (513), Expect = 8e-50
 Identities = 108/205 (52%), Positives = 130/205 (63%)
 Frame = +1

Query: 1   RLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTR 180
           R+LRPLR+ + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF R
Sbjct: 365 RMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFAR 424

Query: 181 PHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLR 360
           P PVNP+DA+T ++F+ F          T+  +L   +E    H SL +  + L   QL 
Sbjct: 425 PQPVNPDDAETTQSFQAF-----CQATATVEXTLAQQSETPDEHQSLSLKCSTLPEHQLW 479

Query: 361 ALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXXTKANATLNQGDHADQAPVNSDPA 540
           ALHELG+ R GGPLLPK       +E                  ++   +   P   DP+
Sbjct: 480 ALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPP--HKTTQSSDLPHPQDPS 537

Query: 541 TLPWVAWLPKLNALGFEALEIQTDP 615
           TLPWVAWLPKLNALGFEALEIQTDP
Sbjct: 538 TLPWVAWLPKLNALGFEALEIQTDP 562


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  202 bits (513), Expect = 8e-50
 Identities = 111/205 (54%), Positives = 132/205 (64%)
 Frame = +1

Query: 1   RLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTR 180
           R+LRPLR+ + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF R
Sbjct: 365 RMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFAR 424

Query: 181 PHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLR 360
           P PVNP+DA+T ++F+ F   A A+   T+A   E   E    H SL +  + L   QL 
Sbjct: 425 PQPVNPDDAETTQSFQAFC-QATATVEATLAQQSETPDE----HQSLSLKCSTLPEHQLW 479

Query: 361 ALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXXTKANATLNQGDHADQAPVNSDPA 540
           ALHELG+ R GGPLLPK       +E                  ++   +   P   DP+
Sbjct: 480 ALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPP--HKTTQSSDLPHPQDPS 537

Query: 541 TLPWVAWLPKLNALGFEALEIQTDP 615
           TLPWVAWLPKLNALGFEALEIQTDP
Sbjct: 538 TLPWVAWLPKLNALGFEALEIQTDP 562


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  201 bits (511), Expect = 1e-49
 Identities = 111/205 (54%), Positives = 131/205 (63%)
 Frame = +1

Query: 1   RLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTR 180
           R+LRPLR+ + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF R
Sbjct: 365 RMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFAR 424

Query: 181 PHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLR 360
           P PVNP+DA+T ++F+ F   A A+   T+A   E   E    H SL +    L   QL 
Sbjct: 425 PQPVNPDDAETTQSFQAFC-QATATVEATLAQQSETPDE----HQSLSLKCPTLPEHQLW 479

Query: 361 ALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXXTKANATLNQGDHADQAPVNSDPA 540
           ALHELG+ R GGPLLPK       +E                  ++   +   P   DP+
Sbjct: 480 ALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPP--HKTTQSSDLPHPQDPS 537

Query: 541 TLPWVAWLPKLNALGFEALEIQTDP 615
           TLPWVAWLPKLNALGFEALEIQTDP
Sbjct: 538 TLPWVAWLPKLNALGFEALEIQTDP 562


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  201 bits (511), Expect = 1e-49
 Identities = 111/205 (54%), Positives = 131/205 (63%)
 Frame = +1

Query: 1   RLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTR 180
           R+LRPLR+ + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF R
Sbjct: 365 RMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFAR 424

Query: 181 PHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLR 360
           P PVNP+DA+T ++F+ F   A A+   T+A   E   E    H SL +    L   QL 
Sbjct: 425 PQPVNPDDAETTQSFQAFC-QATATVEATLAQQSETPDE----HQSLSLKCPTLPEHQLW 479

Query: 361 ALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXXTKANATLNQGDHADQAPVNSDPA 540
           ALHELG+ R GGPLLPK       +E                  ++   +   P   DP+
Sbjct: 480 ALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPP--HKTTQSSDLPHPQDPS 537

Query: 541 TLPWVAWLPKLNALGFEALEIQTDP 615
           TLPWVAWLPKLNALGFEALEIQTDP
Sbjct: 538 TLPWVAWLPKLNALGFEALEIQTDP 562


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  201 bits (511), Expect = 1e-49
 Identities = 111/205 (54%), Positives = 131/205 (63%)
 Frame = +1

Query: 1   RLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTR 180
           R+LRPLR+ + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF R
Sbjct: 365 RMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFAR 424

Query: 181 PHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLR 360
           P PVNP+DA+T ++F+ F   A A+   T+A   E   E    H SL +    L   QL 
Sbjct: 425 PQPVNPDDAETTQSFQAFC-QATATVEATLAQQSETPDE----HQSLSLKCPTLPEHQLW 479

Query: 361 ALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXXTKANATLNQGDHADQAPVNSDPA 540
           ALHELG+ R GGPLLPK       +E                  ++   +   P   DP+
Sbjct: 480 ALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPP--HKTTQSSDLPHPQDPS 537

Query: 541 TLPWVAWLPKLNALGFEALEIQTDP 615
           TLPWVAWLPKLNALGFEALEIQTDP
Sbjct: 538 TLPWVAWLPKLNALGFEALEIQTDP 562


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  199 bits (507), Expect = 4e-49
 Identities = 110/205 (53%), Positives = 131/205 (63%)
 Frame = +1

Query: 1   RLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTR 180
           R+LRPLR+ + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF R
Sbjct: 365 RMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFAR 424

Query: 181 PHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLR 360
           P PVNP+DA+T ++F+ F   A A+   T+A   E   E    H SL +  + L   QL 
Sbjct: 425 PQPVNPDDAETTQSFQAFC-QATATVEATLAQQSETPDE----HQSLSLKCSTLPEHQLW 479

Query: 361 ALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXXTKANATLNQGDHADQAPVNSDPA 540
           ALHELG+ R G PLLPK       +E                  ++   +   P   DP+
Sbjct: 480 ALHELGNARCGAPLLPKGPAKLTRAEPCPDLPAEPQAVPEPP--HKTTQSSDLPHPQDPS 537

Query: 541 TLPWVAWLPKLNALGFEALEIQTDP 615
           TLPWVAWLPKLNALGFEALEIQTDP
Sbjct: 538 TLPWVAWLPKLNALGFEALEIQTDP 562


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
           gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
           [Tulip virus X]
          Length = 1361

 Score =  124 bits (311), Expect = 2e-26
 Identities = 89/211 (42%), Positives = 102/211 (48%), Gaps = 6/211 (2%)
 Frame = +1

Query: 1   RLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTR 180
           RLLRP R + Q +++FF+G P   KLIKAL WQP+ LEF V TV    R PPGF +P  R
Sbjct: 364 RLLRPARVNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVHKRTPPGFRHPLCR 423

Query: 181 PHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLR 360
           P PVN  DA T  A       A  S P                         +LS +QL 
Sbjct: 424 PLPVNEVDALTTAA------CANQSLPLD-----------------------NLSEDQLE 454

Query: 361 ALHELGSTRLGGPLLPKITPDEQDSE---XXXXXXXXXXXTKANATLNQGDHADQ---AP 522
           ALH LGS R  G  LP  +P +   E              TK   T N    A+     P
Sbjct: 455 ALHVLGSLRTDGESLP--SPPKAPLETGPHPTPTISAAGPTKTVPTPNVEVSANPLTGTP 512

Query: 523 VNSDPATLPWVAWLPKLNALGFEALEIQTDP 615
           +  DP TLPW AWLP L ALGFEA EIQTDP
Sbjct: 513 L-PDPDTLPWKAWLPHLRALGFEASEIQTDP 542