BLASTX nr result
ID: Ephedra27_contig00019033
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00019033
(694 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro... 223 3e-56
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 223 3e-56
ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A... 223 6e-56
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall... 223 6e-56
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 223 6e-56
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali... 221 1e-55
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha... 221 1e-55
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 221 2e-55
gb|EXB32317.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 220 3e-55
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 219 6e-55
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 219 6e-55
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 218 1e-54
gb|ESW25212.1| hypothetical protein PHAVU_003G016800g [Phaseolus... 218 2e-54
ref|XP_004298501.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 218 2e-54
ref|XP_006579561.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 216 4e-54
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 216 4e-54
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc... 216 5e-54
gb|EXB53891.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 216 7e-54
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 216 7e-54
gb|ABF81698.1| RNA-dependent RNA polymerase [Zea mays] 216 7e-54
>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao]
gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 223 bits (569), Expect = 3e-56
Identities = 112/227 (49%), Positives = 159/227 (70%)
Frame = +3
Query: 9 YNADFKQSDRAAVFKQKKMMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVT 188
Y A K + ++ + +TPS++Y GPE+ SNRV RHF +I++F+++T
Sbjct: 345 YIASKKNPGSPVISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRIT 404
Query: 189 FVDEDYEKLHFSELTVKTEKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQL 368
FVDE+ EK+H ++L + + ++I+ RIL+TLK+G+VI +K+F+FLAFS+SQL
Sbjct: 405 FVDEELEKIHSTDLLTRN--------RITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQL 456
Query: 369 RENSVWMFASTKEVTSSHIRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTI 548
RENS WMFAS + +T++ IR WMG F I+NVA Y+ARLGQSFS S ET V K+E I
Sbjct: 457 RENSAWMFASREGLTAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEII 516
Query: 549 EDIEVITDGVKYCFSDGIGKISPRFAKRICSKCELDCKTPPSAFQIR 689
+D+E+ DG+ Y FSDGIGKIS +FAK++ +KC L+ +T PSAFQIR
Sbjct: 517 DDVEIKRDGINYVFSDGIGKISAKFAKKVAAKCRLNGRT-PSAFQIR 562
>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 223 bits (569), Expect = 3e-56
Identities = 112/210 (53%), Positives = 154/210 (73%)
Frame = +3
Query: 63 MMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVKT 242
++ Y+ VTP+++Y GPE+ SNRV RH+SK I +F++V+FVDED EK+ +L+ +
Sbjct: 365 LVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPR- 423
Query: 243 EKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSSH 422
S + +K++DRI + L+DG+VI +KKF+FLAFS+SQLRENS WMFA + +TS+H
Sbjct: 424 ----SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIEGLTSAH 479
Query: 423 IRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDGI 602
IR WMG+F++I+NVA Y+ARLGQSFS S ET V +E I D+E+I+ G +Y FSDGI
Sbjct: 480 IRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGI 539
Query: 603 GKISPRFAKRICSKCELDCKTPPSAFQIRY 692
GKIS FA+R+ KC L + PSAFQIRY
Sbjct: 540 GKISAEFARRVAKKCGL-TEFSPSAFQIRY 568
>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
gi|548839203|gb|ERM99496.1| hypothetical protein
AMTR_s00088p00026960 [Amborella trichopoda]
Length = 1107
Score = 223 bits (567), Expect = 6e-56
Identities = 109/222 (49%), Positives = 156/222 (70%)
Frame = +3
Query: 27 QSDRAAVFKQKKMMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDY 206
QS ++ + +M ++A+VTPSK+Y +GPEL+ SN + +HF+ +DF++V+FVDED+
Sbjct: 351 QSPSSSKLEDHNLMNCHRALVTPSKVYFLGPELETSNYIVKHFAAYADDFLRVSFVDEDW 410
Query: 207 EKLHFSELTVKTEKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVW 386
KL L+ K E G + I+ RI++ L+DG+V+ +K+F+FLAFSASQLR N+VW
Sbjct: 411 SKLPSDALSPKLESGFFAKPYRTNIYKRIVSVLRDGIVLGSKRFEFLAFSASQLRSNAVW 470
Query: 387 MFASTKEVTSSHIRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVI 566
MFAS + ++ IR WMG F+N++ +A +AR+GQ FS S T V +E + I DIEV
Sbjct: 471 MFASNENISVESIREWMGEFKNLRCIAKCAARMGQLFSSSTPTLSVPLHEVQVIPDIEVT 530
Query: 567 TDGVKYCFSDGIGKISPRFAKRICSKCELDCKTPPSAFQIRY 692
TDG++YCFSDGIGKIS FA+++ +C L K PPSAFQIRY
Sbjct: 531 TDGIEYCFSDGIGKISLAFARQVARRCGL--KQPPSAFQIRY 570
>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 223 bits (567), Expect = 6e-56
Identities = 112/210 (53%), Positives = 153/210 (72%)
Frame = +3
Query: 63 MMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVKT 242
++ Y+ VTP+++Y GPE+ SNRV RH+SK I +F++V+FVDED EK+ +L+ +
Sbjct: 365 LVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPR- 423
Query: 243 EKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSSH 422
S + +K++DRI + L+DG+VI +KKF+FLAFS+SQLRENS WMFA +TS+H
Sbjct: 424 ----SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDGLTSAH 479
Query: 423 IRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDGI 602
IR WMG+F++I+NVA Y+ARLGQSFS S ET V +E I D+E+I+ G +Y FSDGI
Sbjct: 480 IRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGI 539
Query: 603 GKISPRFAKRICSKCELDCKTPPSAFQIRY 692
GKIS FA+R+ KC L + PSAFQIRY
Sbjct: 540 GKISAEFARRVAKKCGL-TEFSPSAFQIRY 568
>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 223 bits (567), Expect = 6e-56
Identities = 112/210 (53%), Positives = 153/210 (72%)
Frame = +3
Query: 63 MMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVKT 242
++ Y+ VTP+++Y GPE+ SNRV RH+SK I +F++V+FVDED EK+ +L+ +
Sbjct: 355 LVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPR- 413
Query: 243 EKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSSH 422
S + +K++DRI + L+DG+VI +KKF+FLAFS+SQLRENS WMFA +TS+H
Sbjct: 414 ----SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDGLTSAH 469
Query: 423 IRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDGI 602
IR WMG+F++I+NVA Y+ARLGQSFS S ET V +E I D+E+I+ G +Y FSDGI
Sbjct: 470 IRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGI 529
Query: 603 GKISPRFAKRICSKCELDCKTPPSAFQIRY 692
GKIS FA+R+ KC L + PSAFQIRY
Sbjct: 530 GKISAEFARRVAKKCGL-TEFSPSAFQIRY 558
>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 221 bits (564), Expect = 1e-55
Identities = 110/210 (52%), Positives = 153/210 (72%)
Frame = +3
Query: 63 MMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVKT 242
++ Y+ VTP+++Y GPE+ SNRV RH+SK I +F++V+FVDED EK+ +L+ +
Sbjct: 364 LVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPR- 422
Query: 243 EKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSSH 422
S + +K++DRI + L+DG+VI +KKF+FLAFS+SQLRENS WMFA +T++H
Sbjct: 423 ----SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAH 478
Query: 423 IRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDGI 602
IR WMG+F++I+NVA Y+ARLGQSFS S ET V +E I D+E+I+ G +Y FSDGI
Sbjct: 479 IRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGI 538
Query: 603 GKISPRFAKRICSKCELDCKTPPSAFQIRY 692
GKIS FA+++ KC L + PSAFQIRY
Sbjct: 539 GKISAEFARKVARKCGL-TEFSPSAFQIRY 567
>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
[Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
putative RNA-directed RNA polymerase [Arabidopsis
thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 221 bits (564), Expect = 1e-55
Identities = 110/210 (52%), Positives = 153/210 (72%)
Frame = +3
Query: 63 MMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVKT 242
++ Y+ VTP+++Y GPE+ SNRV RH+SK I +F++V+FVDED EK+ +L+ +
Sbjct: 364 LVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPR- 422
Query: 243 EKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSSH 422
S + +K++DRI + L+DG+VI +KKF+FLAFS+SQLRENS WMFA +T++H
Sbjct: 423 ----SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAH 478
Query: 423 IRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDGI 602
IR WMG+F++I+NVA Y+ARLGQSFS S ET V +E I D+E+I+ G +Y FSDGI
Sbjct: 479 IRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGI 538
Query: 603 GKISPRFAKRICSKCELDCKTPPSAFQIRY 692
GKIS FA+++ KC L + PSAFQIRY
Sbjct: 539 GKISAEFARKVARKCGL-TEFSPSAFQIRY 567
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 221 bits (563), Expect = 2e-55
Identities = 110/201 (54%), Positives = 149/201 (74%)
Frame = +3
Query: 87 VTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVKTEKGSSGAL 266
+TPS++Y GPE+ SNRV R F +I++F++++FVDE+ EK+H + + + +
Sbjct: 371 ITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQARGRR------ 424
Query: 267 KGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSSHIRNWMGNF 446
+ I+ RIL+TL++G+VI NK+F+FLAFS+SQLRENS WMFAS K +T++ IR+WMGNF
Sbjct: 425 --TGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNF 482
Query: 447 ENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDGIGKISPRFA 626
I+NVA Y+ARLGQSFS S ET V K+E I DIE++ DG+KY FSDGIGKIS FA
Sbjct: 483 SKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGIGKISAEFA 542
Query: 627 KRICSKCELDCKTPPSAFQIR 689
K++ +KC L T PSAFQIR
Sbjct: 543 KKVAAKCRLKGCT-PSAFQIR 562
>gb|EXB32317.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 862
Score = 220 bits (561), Expect = 3e-55
Identities = 113/228 (49%), Positives = 161/228 (70%)
Frame = +3
Query: 9 YNADFKQSDRAAVFKQKKMMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVT 188
YN + + + ++ ++ VTP+K+Y GPE+ SNRV R++ K+I++F++V+
Sbjct: 327 YNTSGQIPKMPTIALEDGLVYVHRVQVTPTKVYFCGPEINLSNRVLRNYPKDIDNFLRVS 386
Query: 189 FVDEDYEKLHFSELTVKTEKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQL 368
FVDE+ +KL ++L + S+ + ++++DRIL TL++G++I +KKF+FLAFS+SQL
Sbjct: 387 FVDENLDKLSSTDLCARGS--SANGKRRTRLYDRILFTLRNGILIGDKKFEFLAFSSSQL 444
Query: 369 RENSVWMFASTKEVTSSHIRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTI 548
+E S+WMFAS +T++ IRNWMG+F +IKNVA Y+ARLGQSF S ETF V ++E I
Sbjct: 445 KEGSLWMFASRDGLTAADIRNWMGDFHDIKNVARYAARLGQSFGSSHETFRVGRDEVELI 504
Query: 549 EDIEVITDGVKYCFSDGIGKISPRFAKRICSKCELDCKTPPSAFQIRY 692
DIEV DG YCFSDGIGKIS FAK + KC L+ T PSAFQIRY
Sbjct: 505 PDIEVKRDGKNYCFSDGIGKISEDFAKEVAKKCGLNRYT-PSAFQIRY 551
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 219 bits (558), Expect = 6e-55
Identities = 107/210 (50%), Positives = 153/210 (72%)
Frame = +3
Query: 63 MMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVKT 242
++ Y+ +VTP+++Y +GPE+ SNRV RH+S+ I +F++++FVDED EK+H +L+ +
Sbjct: 364 LVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLEKIHSMDLSPR- 422
Query: 243 EKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSSH 422
S + +K++DRI + L+DG+VI +KKF+FLAFS+SQLRENS WMFA +T++H
Sbjct: 423 ----SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPRDRLTAAH 478
Query: 423 IRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDGI 602
IR WMG+F++I+NVA Y+ARLGQSFS S ET V +E I D+E + +Y FSDGI
Sbjct: 479 IRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDTRYVFSDGI 538
Query: 603 GKISPRFAKRICSKCELDCKTPPSAFQIRY 692
GKIS FA+++ KC L + PSAFQIRY
Sbjct: 539 GKISAEFARKVAKKCGL-TEFSPSAFQIRY 567
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 219 bits (558), Expect = 6e-55
Identities = 109/201 (54%), Positives = 148/201 (73%)
Frame = +3
Query: 87 VTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVKTEKGSSGAL 266
+TPS++Y GPE+ SNRV R F +I++F++++FVDE+ EK+H + + + +
Sbjct: 371 ITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQARGRR------ 424
Query: 267 KGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSSHIRNWMGNF 446
+ I+ RIL+TL++G+VI NK+F+FLAFS+SQLRENS WMFAS K +T++ IR+WMGNF
Sbjct: 425 --TGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNF 482
Query: 447 ENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDGIGKISPRFA 626
I+NVA Y+ARLGQSFS S ET V K+E I DIE++ DG+KY F DGIGKIS FA
Sbjct: 483 SKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGIGKISAEFA 542
Query: 627 KRICSKCELDCKTPPSAFQIR 689
K++ +KC L T PSAFQIR
Sbjct: 543 KKVAAKCRLKGCT-PSAFQIR 562
>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
Length = 1122
Score = 218 bits (555), Expect = 1e-54
Identities = 106/210 (50%), Positives = 150/210 (71%)
Frame = +3
Query: 63 MMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVKT 242
+M ++A++TPSKIY +GPEL+ SN V +HF+ DF+++TFV+ED+ KL + ++
Sbjct: 373 IMSCHRALITPSKIYCLGPELETSNHVVKHFASYASDFMRITFVEEDWSKLPINAVSTSL 432
Query: 243 EKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSSH 422
+KG + I+ R+LT L+DG+VI +K+F+FLAFSASQLR NSVW+FAS +V +
Sbjct: 433 QKGIFAKPFRTDIYKRVLTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAED 492
Query: 423 IRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDGI 602
IR WMG+F NI++V+ +AR+GQ FS S +TF + + I DIE+ +DG+ YCFSDGI
Sbjct: 493 IREWMGSFTNIRSVSKCAARMGQLFSSSKQTFEMAPQDVDIIPDIELTSDGINYCFSDGI 552
Query: 603 GKISPRFAKRICSKCELDCKTPPSAFQIRY 692
GKIS FAK++ K +LD PSAFQIRY
Sbjct: 553 GKISLSFAKQLAQKLKLDQSRIPSAFQIRY 582
>gb|ESW25212.1| hypothetical protein PHAVU_003G016800g [Phaseolus vulgaris]
Length = 1139
Score = 218 bits (554), Expect = 2e-54
Identities = 113/218 (51%), Positives = 152/218 (69%)
Frame = +3
Query: 39 AAVFKQKKMMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLH 218
+A+ ++ ++ VTPSKIY GPE+ SNRV R++ ++ ++F++V+FVDED EKLH
Sbjct: 349 SAISLDDGLVYVHRVQVTPSKIYFCGPEVNLSNRVLRNYPEDTDNFLRVSFVDEDMEKLH 408
Query: 219 FSELTVKTEKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFAS 398
++L + S + +K+H+R+L TLK+G+ I +KKF+FLAFS SQLR+NSVWM AS
Sbjct: 409 SADLVPSSSSVSMD--RETKLHERVLATLKNGIEIGDKKFEFLAFSPSQLRDNSVWMVAS 466
Query: 399 TKEVTSSHIRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGV 578
+T+S IRNWMG F I+NVA Y+ARLGQSFS S ET VE++E + I DIE
Sbjct: 467 RTGLTASDIRNWMGEFHEIRNVAKYAARLGQSFSSSRETVRVERHEVKIIPDIEFRRGEN 526
Query: 579 KYCFSDGIGKISPRFAKRICSKCELDCKTPPSAFQIRY 692
KYCFSDGIGKIS A+ + KC C+ PSAFQIRY
Sbjct: 527 KYCFSDGIGKISYELAQEVAKKC--GCRDTPSAFQIRY 562
>ref|XP_004298501.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca
subsp. vesca]
Length = 1107
Score = 218 bits (554), Expect = 2e-54
Identities = 108/230 (46%), Positives = 157/230 (68%)
Frame = +3
Query: 3 NLYNADFKQSDRAAVFKQKKMMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIK 182
N+Y A + A+ + + ++ ++TP+K+Y GPE+ SNRV R++ ++I++F++
Sbjct: 320 NMYKACKRIPQSPAITLDEGFVYVHRVLITPTKVYFCGPEVNLSNRVLRNYPEDIDNFLR 379
Query: 183 VTFVDEDYEKLHFSELTVKTEKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSAS 362
V+FVDED K+ +L+ +T + +++++RIL+ L+DG+VI KKF+ LAFS S
Sbjct: 380 VSFVDEDLGKMRSVDLSPRTRCAEEE--RRTRVYERILSVLRDGIVIGEKKFELLAFSGS 437
Query: 363 QLRENSVWMFASTKEVTSSHIRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECR 542
QLR+NS WMFAS K +T+ IR+WMG+F +I NV+ Y ARLGQSFS SWETF V +E
Sbjct: 438 QLRQNSAWMFASRKGLTAQGIRDWMGDFSHITNVSKYGARLGQSFSSSWETFSVGSDEIE 497
Query: 543 TIEDIEVITDGVKYCFSDGIGKISPRFAKRICSKCELDCKTPPSAFQIRY 692
I D+E+ +G YCFSDGIGKIS FA+R+ KC + PSAFQIRY
Sbjct: 498 AIPDVEIKRNGTNYCFSDGIGKISADFAERVARKC--GKSSTPSAFQIRY 545
>ref|XP_006579561.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X2 [Glycine
max]
Length = 941
Score = 216 bits (551), Expect = 4e-54
Identities = 106/210 (50%), Positives = 152/210 (72%)
Frame = +3
Query: 63 MMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVKT 242
+M ++A++TP+KIY +GPEL+ SN V +HF+ + DF+++TFV+E++ KL + ++
Sbjct: 193 IMSCHRALITPTKIYCLGPELETSNHVVKHFASHASDFMRITFVEENWNKLPTNAVSTGV 252
Query: 243 EKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSSH 422
+KG ++I+ RILT L+DG+VI +K+F+FLAFSASQLR NSVW+FAS + ++
Sbjct: 253 QKGLFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAAD 312
Query: 423 IRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDGI 602
IR WMG F NI++V+ +AR+GQ FS S +TF V + I D+EVI+DGV YCFSDGI
Sbjct: 313 IREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVVSQDVEIIPDVEVISDGVSYCFSDGI 372
Query: 603 GKISPRFAKRICSKCELDCKTPPSAFQIRY 692
GKIS FA+++ K +LD PSAFQIRY
Sbjct: 373 GKISQSFARQVAQKLKLD--HTPSAFQIRY 400
>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
max]
Length = 1121
Score = 216 bits (551), Expect = 4e-54
Identities = 106/210 (50%), Positives = 152/210 (72%)
Frame = +3
Query: 63 MMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVKT 242
+M ++A++TP+KIY +GPEL+ SN V +HF+ + DF+++TFV+E++ KL + ++
Sbjct: 373 IMSCHRALITPTKIYCLGPELETSNHVVKHFASHASDFMRITFVEENWNKLPTNAVSTGV 432
Query: 243 EKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSSH 422
+KG ++I+ RILT L+DG+VI +K+F+FLAFSASQLR NSVW+FAS + ++
Sbjct: 433 QKGLFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAAD 492
Query: 423 IRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDGI 602
IR WMG F NI++V+ +AR+GQ FS S +TF V + I D+EVI+DGV YCFSDGI
Sbjct: 493 IREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVVSQDVEIIPDVEVISDGVSYCFSDGI 552
Query: 603 GKISPRFAKRICSKCELDCKTPPSAFQIRY 692
GKIS FA+++ K +LD PSAFQIRY
Sbjct: 553 GKISQSFARQVAQKLKLD--HTPSAFQIRY 580
>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
[Medicago truncatula]
Length = 1308
Score = 216 bits (550), Expect = 5e-54
Identities = 103/210 (49%), Positives = 152/210 (72%)
Frame = +3
Query: 63 MMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVKT 242
+M ++A++TPSKIY +GPEL+ SN V +HF+ DF+++TFV+ED+ KL + +++
Sbjct: 374 IMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEEDWSKLPNNAISITL 433
Query: 243 EKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSSH 422
+KG ++I+ R+L L+DG++I +K+F+FLAFSASQLR NSVW+FAS +V ++
Sbjct: 434 KKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAAD 493
Query: 423 IRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDGI 602
IR WMG+F NI++V+ +AR+GQ FS S +TF + + I DIE+ +DG+ YCFSDGI
Sbjct: 494 IREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDLIPDIEITSDGIDYCFSDGI 553
Query: 603 GKISPRFAKRICSKCELDCKTPPSAFQIRY 692
GKIS FA+++ K +LD PSAFQIRY
Sbjct: 554 GKISQSFARQLAEKLKLDENRIPSAFQIRY 583
>gb|EXB53891.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1118
Score = 216 bits (549), Expect = 7e-54
Identities = 107/206 (51%), Positives = 154/206 (74%)
Frame = +3
Query: 75 YKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVKTEKGS 254
++ VTP+K+Y GPE+ SNRV R++ ++I++F++V+FV+ED +KL ++L+ + S
Sbjct: 334 HRVQVTPTKVYFCGPEINLSNRVLRNYPEDIDNFLRVSFVEEDLDKLFSTDLSARGS--S 391
Query: 255 SGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSSHIRNW 434
+ + +++++RIL+TL++G++I +KKF+FLAFS+SQLRE S WMFAS +T+++IR W
Sbjct: 392 ANGKRRTRLYERILSTLRNGIIIGDKKFEFLAFSSSQLREGSTWMFASRDGLTAANIRKW 451
Query: 435 MGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDGIGKIS 614
MG+F IKNVA Y+ARLGQSF S ETF V ++E I DI+V DG YCFSDGIGKIS
Sbjct: 452 MGDFRCIKNVAKYAARLGQSFGSSHETFRVGRHEVELIPDIQVERDGKNYCFSDGIGKIS 511
Query: 615 PRFAKRICSKCELDCKTPPSAFQIRY 692
FAK + KC L+ + PSAFQIRY
Sbjct: 512 EDFAKEVAKKCGLN-RFTPSAFQIRY 536
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 216 bits (549), Expect = 7e-54
Identities = 106/207 (51%), Positives = 153/207 (73%), Gaps = 1/207 (0%)
Frame = +3
Query: 75 YKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVKTEKGS 254
++ VTPS++Y GPE+ SNRV RHF ++I++F++++F+DED +K+H ++L+ +GS
Sbjct: 372 HRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS---PRGS 428
Query: 255 SGA-LKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSSHIRN 431
S + ++I+ RIL+TL++G++I ++KF+FLAFS+SQLRE+S WMFAS +T++ IR
Sbjct: 429 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIRE 488
Query: 432 WMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDGIGKI 611
WMGNF I+NVA Y+ARLGQSFS S ET V +E I D+++ KY FSDGIGK+
Sbjct: 489 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 548
Query: 612 SPRFAKRICSKCELDCKTPPSAFQIRY 692
S FA+++ SKC L PPSAFQIRY
Sbjct: 549 SAEFARKVASKCGLK-DNPPSAFQIRY 574
>gb|ABF81698.1| RNA-dependent RNA polymerase [Zea mays]
Length = 459
Score = 216 bits (549), Expect = 7e-54
Identities = 111/211 (52%), Positives = 148/211 (70%)
Frame = +3
Query: 60 KMMKFYKAVVTPSKIYHIGPELKRSNRVTRHFSKNIEDFIKVTFVDEDYEKLHFSELTVK 239
K+M+ Y+ +TPSKIY +GPE + SN V ++ S+ DF +VTFVDED+ KL + L+ +
Sbjct: 164 KLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSAR 223
Query: 240 TEKGSSGALKGSKIHDRILTTLKDGLVIHNKKFDFLAFSASQLRENSVWMFASTKEVTSS 419
TE+G + ++ RIL+ LK+G I KK++FLAFSASQLR NSVWMFAS +T+
Sbjct: 224 TEQGFFSKPLKTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAE 283
Query: 420 HIRNWMGNFENIKNVALYSARLGQSFSCSWETFVVEKNECRTIEDIEVITDGVKYCFSDG 599
+IR WMG+FE+I++V+ +AR+GQ FS S +TF V + I DIEV TDG KY FSDG
Sbjct: 284 NIRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTTDGTKYIFSDG 343
Query: 600 IGKISPRFAKRICSKCELDCKTPPSAFQIRY 692
IGKIS RFA+++ LD PPSAFQIRY
Sbjct: 344 IGKISTRFARQVAKLIGLDPAHPPSAFQIRY 374