BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00018824
         (1236 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   197   1e-47
ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutr...   184   7e-44
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   182   3e-43
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   179   2e-42
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro...   178   5e-42
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   177   8e-42
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       176   2e-41
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   175   3e-41
gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]       174   7e-41
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   173   1e-40
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   172   2e-40
ref|XP_004498314.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   171   6e-40
ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   169   2e-39
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   169   2e-39
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   169   2e-39
gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare su...   169   2e-39
ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polyme...   169   3e-39
gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indi...   168   4e-39
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      167   6e-39
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      167   8e-39

>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  197 bits (500), Expect = 1e-47
 Identities = 138/413 (33%), Positives = 210/413 (50%), Gaps = 3/413 (0%)
 Frame = +2

Query: 5    RTVKITNVPANTDAMXXXXXXXXXXXXNGCVYACKVLPTKNPRHETTQAIVQFERKLVAQ 184
            RTV+++  P  T A              G VY  K+   K+  +    AIVQF     A+
Sbjct: 76   RTVQVSGFPQGTCAEAVKKFLESITGF-GTVYHLKIRIHKSKPNSRVFAIVQFTTSKSAE 134

Query: 185  KLCGISEMELTYKLILLLYNDTHVLSVDPLERDLVKRPRRGPVEVATTRVYLGCQVNHNE 364
             +  ++    +     L + +++V+ V  +E D+V  PR     + + ++Y G Q++   
Sbjct: 135  VIYSLAPQPKS-----LYFGNSYVI-VRYMENDIVPNPRVTYHVLESIQLYFGNQISEES 188

Query: 365  YCVLWSSTGHVDFELCANMKKVFIVLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVM 544
            + +LWS+T +V  E    +KK+F  L   G+ Y L   + +I ++      + GT+YLV+
Sbjct: 189  FAILWSNT-NVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVL 247

Query: 545  PLYSAPSVFYKEDS-SSSADDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPN 721
             +  AP +F K  S SS   D+    YYK   D  W+R+ DFT +  IGQ SS+C+ LPN
Sbjct: 248  QMQGAPRIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPN 307

Query: 722  GAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQ 901
            G +  +I+  F  YK I G  +L+       +  LV            Y+IL+ VN LVQ
Sbjct: 308  GTRIPNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQ 367

Query: 902  EGVLSWPTLKRDFFSLLQPTREKTVHCILSALDEMYYSSPSFNPEKILKKSIHA-RNT-R 1075
             G L  PTL  +F++LL       V   L  +  +  ++    P K L++     RN  R
Sbjct: 368  NGFLVGPTLDTEFYNLLNGLPSPFVERSLEDISRL--TNCCLEPAKWLQEQYKKYRNLPR 425

Query: 1076 RYADRNSYLDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
            R +     L+ GLV +HR QVTP+K+Y   PEVNVSNRV+RQFS Y+D+FLR+
Sbjct: 426  RPSPAAISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRI 478


>ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum]
            gi|557094740|gb|ESQ35322.1| hypothetical protein
            EUTSA_v10006629mg [Eutrema salsugineum]
          Length = 1108

 Score =  184 bits (467), Expect = 7e-44
 Identities = 128/390 (32%), Positives = 193/390 (49%), Gaps = 7/390 (1%)
 Frame = +2

Query: 86   NGCVYACKVLPTKN--PRHETTQAIVQFERKLVAQKLCGISEMELTYKLILLLYNDTHVL 259
            +G VYA KV   K   PR     AIVQF  +  A+ +   +E  L Y            L
Sbjct: 29   SGTVYAIKVRQPKKGGPR---VYAIVQFTNERHARWIITRAEEGLYY--------GRSYL 77

Query: 260  SVDPLERDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIV 439
                +E+D+V +PR    +++  ++Y GCQV   +  VLWS+  +V       M+K+   
Sbjct: 78   KASEVEQDIVPKPRASLHKISDLKIYFGCQVTPKKLSVLWSAQ-NVCVSFGTGMRKLHFS 136

Query: 440  LIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYSAPSVFYKEDSSSSADDAQGLE 619
            +  +   Y L   + +I R+  Y    R +K+LV+ +  AP +F KED   +      L+
Sbjct: 137  ISWYEKDYRLELPYENIWRIDLYSPQGRASKFLVIQVIGAPKIFEKEDQPVNLLFGM-LD 195

Query: 620  YYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSL--Q 793
            ++  GSD  WIRTTDFT +  IGQ SS C+ELP      D +  F NY   +    L   
Sbjct: 196  FFSDGSDEQWIRTTDFTSSSCIGQSSSFCLELPRQLNVPDFRENFANYAEHEAGTFLIES 255

Query: 794  MPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKT 973
               +    + LV            ++IL+ VN LVQ   +  P L  DF+ LL P + + 
Sbjct: 256  GSSYSSDATNLVPVVDPPPGFDLPFEILFKVNALVQSACIPGPVLDLDFYQLLDPQKHER 315

Query: 974  VHCILSALDEMYYSSPS-FNPEKILKKSIHARNTRRYADRNSY--LDGGLVRIHRAQVTP 1144
               I  +L++++Y     + P + L++      T+     +    LD GLV +HR QVTP
Sbjct: 316  A-LIDHSLEKLFYLKECCYEPARWLREGYKEWTTKEKLPESPMISLDDGLVYMHRVQVTP 374

Query: 1145 TKIYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
            T+IY   PEVNVSNRV+R +S Y+++FLR+
Sbjct: 375  TRIYFQGPEVNVSNRVLRHYSNYINNFLRI 404


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  182 bits (461), Expect = 3e-43
 Identities = 126/415 (30%), Positives = 202/415 (48%), Gaps = 4/415 (0%)
 Frame = +2

Query: 2    SRTVKITNVPANTDAMXXXXXXXXXXXXNGCVYACKVLPTKNPRHETTQAIVQFERKLVA 181
            S+TVK++  P++T A              G V A K+   +        AIVQF     A
Sbjct: 2    SKTVKVSGFPSSTTA-GAVQVFLESHTGGGTVEALKIREIRTGGARK-YAIVQFTTTRAA 59

Query: 182  QKLCGISEMELTYKLILLLYNDTHVLSVDPLERDLVKRPRRGPVEVATTRVYLGCQVNHN 361
            +++  ++   L Y            L+  P++RD++ +PR     + +  ++ G Q +  
Sbjct: 60   EQIISLANPRLWY--------GHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKE 111

Query: 362  EYCVLWSSTGHVDFELCANMKKVFIVLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLV 541
            ++  +WS   +V       M+K+   L  +  +Y L   F +I ++  +    +  KYL+
Sbjct: 112  KFSAVWSGN-NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLL 170

Query: 542  MPLYSAPSVFYKE-DSSSSADDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELP 718
            + LY AP ++ ++  SSS+  +   L Y++   D  W+RTTDFT + GIG  SS+C+ELP
Sbjct: 171  IQLYGAPRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELP 230

Query: 719  NGAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLV 898
            N  +  +    F+ YK  +G   L+          LV            Y IL+ VNLLV
Sbjct: 231  NHLQLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLV 290

Query: 899  QEGVLSWPTLKRDFFSLLQPTREKTVHCILSALDEMYYSSPS-FNPEKILKKSIHARNTR 1075
            Q G L+   L   F+ L+ P R   V CI  AL+++Y+     + P K   +      T 
Sbjct: 291  QNGCLAGSMLDDIFYRLVDPNR-MPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTS 349

Query: 1076 RYADRNSYL--DGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
                R+  L  D GLV +++ Q+TP K++ C PEVNVSNRV+RQ+   +D+FLRV
Sbjct: 350  GNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRV 404


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score =  179 bits (454), Expect = 2e-42
 Identities = 126/390 (32%), Positives = 188/390 (48%), Gaps = 8/390 (2%)
 Frame = +2

Query: 89   GCVYACKVLPTKNPRHETTQAIVQFERKLVAQKLCGISEMELTYKLILLLYNDTHVLSVD 268
            G VYA KV P K        AIVQF     A+ +  ++   L Y    L    T V    
Sbjct: 30   GTVYAIKVRPPKRGGGRL-YAIVQFTSATQAELIISLANQRLWYGSSYLKARATEV---- 84

Query: 269  PLERDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCA-NMKKVFIVLI 445
                D+V +PR     +    +  GCQV+  ++ VLW   G+VD       M+K+   L 
Sbjct: 85   ----DIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE--GNVDLVTFGIGMRKMNFHLK 138

Query: 446  DHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYSAPSVFYK-EDSSSSADDAQGLEY 622
               ++Y L  S+  I ++  +    +  KYL++ L  AP ++ K   +S    D   L +
Sbjct: 139  YKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKKVAPNSGQIFDNPLLNF 198

Query: 623  YKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQMPF 802
            +K  SD  W+RTTDFT +  IGQ SS+C++LPNG +    K  F  Y+  +    L    
Sbjct: 199  FKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQNFAYYEEFEHEFRLIDED 258

Query: 803  FPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHC 982
                  R +            Y+IL+ +N LVQ G + WP L   F+ L++      +  
Sbjct: 259  ANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLLDASFYRLVERIITTRIEF 318

Query: 983  ILSALDEMY------YSSPSFNPEKILKKSIHARNTRRYADRNSYLDGGLVRIHRAQVTP 1144
            +  AL++++      Y   +F  E+  K S H  N+   +     LD GLV + R Q+TP
Sbjct: 319  VEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVIS-----LDDGLVYVRRVQITP 373

Query: 1145 TKIYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
             K++ C PEVNVSNRV+R FS+Y+D+FLRV
Sbjct: 374  CKVFFCGPEVNVSNRVLRHFSQYIDNFLRV 403


>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao]
          Length = 1109

 Score =  178 bits (451), Expect = 5e-42
 Identities = 123/414 (29%), Positives = 201/414 (48%), Gaps = 4/414 (0%)
 Frame = +2

Query: 5    RTVKITNVPANTDAMXXXXXXXXXXXXNGCVYACKVLPTKNPRHETTQAIVQFERKLVAQ 184
            +T++++  P+N  A                VYA K+   KN       AIVQF +   A+
Sbjct: 3    KTIQVSRFPSNVHAEEVKTFLELYTGKE-TVYALKIRQQKNGGR--AYAIVQFTKSTDAE 59

Query: 185  KLCGISEMELTYKLILLLYNDTHVLSVDPLERDLVKRPRRGPVEVATTRVYLGCQVNHNE 364
             +  ++   L Y         +  L    +E D+V +PR     +    ++ GCQV++ +
Sbjct: 60   LIIRLTNQRLYY--------GSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEK 111

Query: 365  YCVLWSSTGHVDFELCANMKKVFIVLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVM 544
            + VLW     V       M+K+  +L  H ++Y L   + +I ++  +   ++ +KYL++
Sbjct: 112  FYVLWEEVD-VTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLI 170

Query: 545  PLYSAPSVFYKEDSSSS-ADDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPN 721
             L+ AP ++ K+  SS    +   L Y+    D  W+RTTDFT +  IGQ S +C+ELP 
Sbjct: 171  QLFGAPRIYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPY 230

Query: 722  GAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQ 901
              +  + +  F  YK  +G   L+          LV            Y+IL+ +NLLVQ
Sbjct: 231  YLQLPNFRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQ 290

Query: 902  EGVLSWPTLKRDFFSLLQPTREKTVHCILSALDEMYYSSPS-FNPEKILKKSI--HARNT 1072
             G +  P L  +F+ L+ P R   V+ I  AL+++YY     F P K L +    +  + 
Sbjct: 291  NGCIPGPALDANFYRLVNPCRIDKVY-IDHALEKLYYLKECCFEPSKWLLEQYKGYIASK 349

Query: 1073 RRYADRNSYLDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
            +        LD GLV + R Q+TP+++Y C PE+NVSNRV+R F   +D+FLR+
Sbjct: 350  KNPGSPVISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRI 403


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  177 bits (449), Expect = 8e-42
 Identities = 129/415 (31%), Positives = 200/415 (48%), Gaps = 5/415 (1%)
 Frame = +2

Query: 5    RTVKITNVPANTDAMXXXXXXXXXXXXNGCVYACKVLPTKNPRHETTQAIVQFERKLVAQ 184
            +T+++   PA   A              G VYA K L T         AIVQF  K  A 
Sbjct: 3    KTIQVFGFPAGVTA-EAVKDFLESKTGGGTVYALK-LRTPKKGVGRLYAIVQFTTKEAAD 60

Query: 185  KLCGISEMELTYKLILLLYNDTHVLSVDPLERDLVKRPRRGPVEVATTRVYLGCQVNHNE 364
             +     + L  +   L Y  ++ L+   +E+D V RPR     +    ++ GC++++ +
Sbjct: 61   TI-----ISLACRTEKLWYGRSY-LNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEK 114

Query: 365  YCVLWSSTGHVDFELCANMKKVFIVLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVM 544
            + VLW    +V       M+K+  +L   G +Y L   + +I  +  +    + TKYL++
Sbjct: 115  FAVLWRGV-NVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 173

Query: 545  PLYSAPSVFYKEDSSSSA-DDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPN 721
             L  AP +F K   S     ++    ++K   D  W+RTTDFT +  IGQ + +CMELP 
Sbjct: 174  QLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 233

Query: 722  GAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQ 901
              +  D K  F  YK  +    L+       +  LV            Y+IL+ +NLLVQ
Sbjct: 234  RLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQ 293

Query: 902  EGVLSWPTLKRDFFSLLQPTREK-TVHCILSALDEMYYSSPS-FNPEKILKKSIHARNTR 1075
             G ++ P L  +F+ L+ P R   ++ CI  ALD++Y+     + P + L        T 
Sbjct: 294  NGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTS 353

Query: 1076 RYADRNSY--LDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
            R    +    LD GLV +HR QVTP+++Y C PE+NVSNRV+R F R +D+FLR+
Sbjct: 354  RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 408


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  176 bits (445), Expect = 2e-41
 Identities = 124/417 (29%), Positives = 201/417 (48%), Gaps = 7/417 (1%)
 Frame = +2

Query: 5    RTVKITNVPANTDAMXXXXXXXXXXXXNGCVYACKVLPTKNPRHETTQAIVQFERKLVAQ 184
            +T++++  P++  A              G VYA K+ PTKN    +  AIVQF     A+
Sbjct: 3    KTIQLSGFPSHVSA-ESVKEFLEGHTGRGTVYAIKIRPTKNGGSRS-YAIVQFMTVETAE 60

Query: 185  KLCGISEMELTYKLILLLYNDTHVLSVDPLERDLVKRPRRGPVEVATTRVYLGCQVNHNE 364
             +  ++   L Y    LL           +ERD+V +PR     +    ++ GCQ++  +
Sbjct: 61   LIIRLANPRLWYGRSYLLAR--------VMERDIVPKPRATLYSLQNVTLHFGCQISKEK 112

Query: 365  YCVLWSSTGHVDFELCANMKKVFIVLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVM 544
            +  LW   G+V  +    ++++   L    ++Y L   + ++ ++  +    +  KYL++
Sbjct: 113  FSFLWR-VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLI 171

Query: 545  PLYSAPSVFYKEDSSSSADDAQGL-EYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPN 721
             L  AP V+ KE   S       L  Y+K   D  W+R TDFT +  IG  S++ +ELP 
Sbjct: 172  QLLGAPRVYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPY 231

Query: 722  GAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQ 901
            G    D++  F  YK  +    L+          LV            ++ ++ +N+L+Q
Sbjct: 232  GVDLPDLRENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQ 291

Query: 902  EGVLSWPTLKRDFFSLLQPTREKTVHCILSALDEMY------YSSPSFNPEKILKKSIHA 1063
             G LS PTL  DF+ L+ P R + V CI  AL++++      Y   ++  E+  K     
Sbjct: 292  NGCLSGPTLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAP 351

Query: 1064 RNTRRYADRNSYLDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
            R  +  A     LD GLV + R QVTP+K+Y C PE+NVSNRV+R++  Y+D FLRV
Sbjct: 352  RPPKPPAIA---LDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRV 405


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score =  175 bits (444), Expect = 3e-41
 Identities = 123/385 (31%), Positives = 188/385 (48%), Gaps = 3/385 (0%)
 Frame = +2

Query: 89   GCVYACKVLPTKNPRHETTQAIVQFERKLVAQKLCGISEMELTYKLILLLYNDTHVLSVD 268
            G V+A K+ P K+       AI+QF+    A+K+  ++   L Y    L     H     
Sbjct: 30   GSVFALKLRPAKSGGR--FYAIIQFQSISQAEKIISLANARLWYGRSYLNARPAH----- 82

Query: 269  PLERDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLID 448
                D+V +PR     +    +++GCQV  +++ VLW  T  V  +    M+ +   L+ 
Sbjct: 83   ----DIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWG-TAEVSVDFGFGMRNLQFRLLY 137

Query: 449  HGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYSAPSVFYKEDSSSSADDAQGLEYYK 628
                Y L  S+ +I ++  +    R  KYLV+ LY  P ++ +E  SS  +  + + Y++
Sbjct: 138  RQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRIYQQEVCSSGGNGYEDMNYFR 197

Query: 629  YGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFP 808
               D  W+RTTDFT    IGQ SS+C+ L +  +  D +  F  YK   G   L+     
Sbjct: 198  DPDD--WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEENFAYYKKTDGQFILENGSTF 255

Query: 809  MPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCIL 988
                 LV            Y IL+ +NLLVQ+G LS PTL  +F+ L+ P R     CI 
Sbjct: 256  SRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTLDNNFYRLVDPRRISRP-CIE 314

Query: 989  SALDEMYYSSPS-FNPEKILKKSIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTKIYL 1159
             ALD++     S + P   L +        +   + +   LD GLV + R Q+TP+K+Y 
Sbjct: 315  FALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALISLDSGLVYVRRVQITPSKVYF 374

Query: 1160 CRPEVNVSNRVIRQFSRYMDDFLRV 1234
              PEVNVSNR++RQ+S  +D+FLRV
Sbjct: 375  SGPEVNVSNRILRQYSSDIDNFLRV 399


>gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
          Length = 1115

 Score =  174 bits (441), Expect = 7e-41
 Identities = 127/415 (30%), Positives = 202/415 (48%), Gaps = 5/415 (1%)
 Frame = +2

Query: 5    RTVKITNVPANTDAMXXXXXXXXXXXXNGCVYACKVLPTKN-PRHETTQAIVQFERKLVA 181
            +T++++  P+  +A              G V+A K+ P KN   +  + AIVQF+ +  A
Sbjct: 4    KTLQVSGFPSTVNA-DHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHA 62

Query: 182  QKLCGISEMELTYKLILLLYNDTHVLSVDPLERDLVKRPRRGPVEVATTRVYLGCQVNHN 361
              +   ++          L + +H L     ERD+V RPR     +   +++ GC +   
Sbjct: 63   SLVLNAAQRNA-------LRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKER 115

Query: 362  EYCVLWSSTGHVDFELCANMKKVFIVLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLV 541
               VLWS T +V  E    MK++   LI +  KY L  S+ SI  +  +       K+L+
Sbjct: 116  VLSVLWSGT-NVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLL 174

Query: 542  MPLYSAPSVFYKEDS-SSSADDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELP 718
            + + +AP ++ +    S S  D     Y++  +D  W RTTDFT +  IGQ   +C+ELP
Sbjct: 175  IQVQAAPKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILCLELP 234

Query: 719  NGAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLV 898
            +     +I+  F  Y+V     +LQ  +     +  V            Y+IL+ +N LV
Sbjct: 235  HICYLPNIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLV 294

Query: 899  QEGVLSWPTLKRDFFSLLQPTREKTVHCILSALDEM-YYSSPSFNPEKILKKSIHA-RNT 1072
            Q G LS PTL  +F+ L+ P  E+ +  I  AL++M Y      NP   L +     R +
Sbjct: 295  QNGTLSGPTLDDNFYRLVSPGYER-IDRIKRALEKMSYLKKTCLNPTNWLSEQYKKMRRS 353

Query: 1073 RRYADRNSYLDG-GLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
            R     N  LD  GLV ++R Q+TP K+Y   PE+NVSNRV+R ++  +D+FLR+
Sbjct: 354  RVLTSPNITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAADLDNFLRI 408


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  173 bits (439), Expect = 1e-40
 Identities = 125/394 (31%), Positives = 196/394 (49%), Gaps = 11/394 (2%)
 Frame = +2

Query: 86   NGCVYACKVLPTKN--PRHETTQAIVQFERKLVAQKLC-GISEMELTYKLILLLYNDTHV 256
            +G VYA KV   K   PR     AIVQF  ++ A+++  G +E  L Y            
Sbjct: 29   SGTVYAIKVRQPKKGGPR---VFAIVQFTNEIYARQIITGAAERRLYY--------GRSY 77

Query: 257  LSVDPLERDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFI 436
            L+   +E+D+V +PR     ++  ++Y GCQV+      LWS+   V       M+K+  
Sbjct: 78   LNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLWSAQD-VSVSFGIGMRKLHF 136

Query: 437  VLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYSAPSVFYKEDSSSSADDAQGL 616
                +   Y L  S+ +I ++  +    R +K+LV+ +  AP +F KED   +      +
Sbjct: 137  SFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKEDQPINLLFGM-M 195

Query: 617  EYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSL-- 790
            ++Y  GSD  WIRTTDFT +  IGQ ++ C+ELP      D +  F NY   + +  L  
Sbjct: 196  DFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASTYLIE 255

Query: 791  QMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPT--- 961
                +    ++LV            ++IL+ +N LVQ   L  P L  D + LL P    
Sbjct: 256  SGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACLPGPALDLDVYQLLNPKKID 315

Query: 962  REKTVHCILSALDEMYYSSPS-FNPEKILKKSIHARNTRRYADRNSY--LDGGLVRIHRA 1132
            R    HC    L++++Y   S + P + L+K     +++     +    LD GLV ++R 
Sbjct: 316  RALIDHC----LEKLFYLGESCYEPARWLRKQYKELSSKGKLPLSPTISLDDGLVYMYRV 371

Query: 1133 QVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
            QVTP ++Y   PEVNVSNRV+R +S+Y+++FLRV
Sbjct: 372  QVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRV 405


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score =  172 bits (437), Expect = 2e-40
 Identities = 125/388 (32%), Positives = 189/388 (48%), Gaps = 6/388 (1%)
 Frame = +2

Query: 89   GCVYACKVLPTKNPRHETTQAIVQFERKLVAQKLCGISEMELTYKLILLLYNDTHVLSVD 268
            G V+A K+   K  R     AI+QF     A  +     M     ++  L   T  L   
Sbjct: 30   GTVFAIKLRHGKG-RVPRAFAIIQFTTANSATSM-----MSRANNILRTLRYGTSYLKAR 83

Query: 269  PLERDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLID 448
             +ERD+V RPR     +   ++  GCQ++   + VLW     V     + M+K+  +   
Sbjct: 84   EMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLWKKQD-VIVNFGSGMRKMHFLFSH 142

Query: 449  HGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYSAPSVFYKE-DSSSSADDAQGLEYY 625
            + ++Y L  S+ +I ++  +   +  T+YL++ L  AP VF  +  +S++  D     ++
Sbjct: 143  NNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGAPRVFENDVPTSTNIFDDPLFNFF 202

Query: 626  KYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFF 805
            K   D  WIR  DFT    IGQ S+IC+ELPNG +  + +  F  Y+  +   +LQ    
Sbjct: 203  KDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLPNFRENFAYYEESERQYTLQTGVP 262

Query: 806  PMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCI 985
                  LV            Y IL+ VN LVQ   L+ P L  DF+ L+ P R      I
Sbjct: 263  FSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLAGPALDGDFYRLVDPRRMPR-EFI 321

Query: 986  LSALDEMYYSSP-SFNPEKIL----KKSIHARNTRRYADRNSYLDGGLVRIHRAQVTPTK 1150
              AL+++YYS    + P K L    K  + ++N  R    +  LD GLV + R Q+TP K
Sbjct: 322  EYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPRSPAIS--LDTGLVYVRRVQITPCK 379

Query: 1151 IYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
            +Y C PE+NVSNRV+R F  ++D+FLRV
Sbjct: 380  VYFCGPEMNVSNRVLRHFREHIDNFLRV 407


>ref|XP_004498314.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cicer arietinum]
          Length = 1135

 Score =  171 bits (433), Expect = 6e-40
 Identities = 106/337 (31%), Positives = 173/337 (51%), Gaps = 3/337 (0%)
 Frame = +2

Query: 233  LLYNDTHVLSVDPLERDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELC 412
            L YN  +VL    ++ D++ +PR     +    V+ GCQ +  ++ VLW    +   +  
Sbjct: 71   LSYNSDYVLHSKVIKHDILPKPRIFAYNMDAIGVHFGCQTSKGKHSVLWEHP-NASVKFG 129

Query: 413  ANMKKVFIVLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYSAPSVFYKEDSSS 592
            A ++K+++        Y L+ +  SI R+  + S  +  K L+  L SAP ++ K+DS S
Sbjct: 130  ARLRKMYMFFQYLSKDYKLMINLESISRIELHHSCCQTKKLLLFQLRSAPQIYEKDDSES 189

Query: 593  SADDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVI 772
            +        Y+K   D++W R+ DFT +  IGQ S++C++LP   +  + +  + NY  +
Sbjct: 190  N--------YFKEAYDSHWFRSVDFTQSCCIGQSSALCLDLPQNTEVPNFRHQYRNYYKV 241

Query: 773  KGNLSLQMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLSWPTLKRDFFSLL 952
               L L+     +     V            Y+IL+ +N LVQ G L    +  +FF ++
Sbjct: 242  DNTLDLEKQHDFLSNLNFVPMVIPPEALNLPYKILFKINSLVQHGFLPLQAIHTNFFHMI 301

Query: 953  QPTREKTVHCILSALDEMYYSSPS-FNPEKILKKSIHARNTRRYADRNSY--LDGGLVRI 1123
             P R K  + I SAL+++Y      + P + L+K     +T      +S   LD GLV +
Sbjct: 302  DPQRIKDAY-IESALNKLYQMKECCYEPIQWLEKEYQRYSTNSSIPLSSTISLDKGLVYV 360

Query: 1124 HRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
            HR QVTP++IY C PEVN+SNRV+R F+   D+FLRV
Sbjct: 361  HRVQVTPSRIYFCGPEVNLSNRVLRNFADDTDNFLRV 397


>ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Cicer
            arietinum]
          Length = 1100

 Score =  169 bits (429), Expect = 2e-39
 Identities = 124/388 (31%), Positives = 186/388 (47%), Gaps = 6/388 (1%)
 Frame = +2

Query: 89   GCVYACKVLPTKNPRHETTQAIVQFERKLVAQKLCGISEMELTYKLILLLYNDTHVLSVD 268
            G V A K+   K  R +   AI+QF     A  +  +     T    +L Y +++ L + 
Sbjct: 32   GSVVAIKIREGK-ARVQRAYAIIQFNTANQATHMLSLHNRSST----MLRYGNSY-LKIR 85

Query: 269  PLERDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLID 448
             + RD+V  PR     +    +Y GCQ++   + +LW     V  +L A M+K    +  
Sbjct: 86   EMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILWRKRD-VSVDLSAGMRKWRFCMCH 144

Query: 449  HGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYSAPSVF--YKEDSSSSADDAQGLE- 619
               K+    S+ +I ++  Y    +  KYL++ L  AP +F  Y   S+S+      L+ 
Sbjct: 145  DNKKFKFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAPRIFELYVPTSTSTNVYEDPLKN 204

Query: 620  YYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQMP 799
            Y+K   D  WIR  DFT    IGQ S+IC+ELP      +I+  F +Y+  +G  +L+  
Sbjct: 205  YFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDRDFPNIREYFVHYQENEGQYTLESG 264

Query: 800  FFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVH 979
                    +V            + IL+ VN LVQ G LS   L   F+ L+ P R   V 
Sbjct: 265  SPFSHNLDVVPIVAPPQGIYIPFDILFKVNSLVQHGCLSGSELDNAFYCLVDPLRIN-VD 323

Query: 980  CILSALDEMYYSSP-SFNPEKILKKSIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTK 1150
             I  AL++MYYS    + P + LK          Y  ++    LD GLV + R Q+TP K
Sbjct: 324  FIEHALEKMYYSKDFCYEPARWLKDQYRMYLNSNYPLQSPSISLDNGLVYVRRVQITPCK 383

Query: 1151 IYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
            +Y C PE+NVSNRV+R F  ++D+FLRV
Sbjct: 384  VYFCGPEINVSNRVVRHFHEHIDNFLRV 411


>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
            arietinum]
          Length = 1126

 Score =  169 bits (429), Expect = 2e-39
 Identities = 124/388 (31%), Positives = 186/388 (47%), Gaps = 6/388 (1%)
 Frame = +2

Query: 89   GCVYACKVLPTKNPRHETTQAIVQFERKLVAQKLCGISEMELTYKLILLLYNDTHVLSVD 268
            G V A K+   K  R +   AI+QF     A  +  +     T    +L Y +++ L + 
Sbjct: 32   GSVVAIKIREGK-ARVQRAYAIIQFNTANQATHMLSLHNRSST----MLRYGNSY-LKIR 85

Query: 269  PLERDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLID 448
             + RD+V  PR     +    +Y GCQ++   + +LW     V  +L A M+K    +  
Sbjct: 86   EMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILWRKRD-VSVDLSAGMRKWRFCMCH 144

Query: 449  HGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYSAPSVF--YKEDSSSSADDAQGLE- 619
               K+    S+ +I ++  Y    +  KYL++ L  AP +F  Y   S+S+      L+ 
Sbjct: 145  DNKKFKFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAPRIFELYVPTSTSTNVYEDPLKN 204

Query: 620  YYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQMP 799
            Y+K   D  WIR  DFT    IGQ S+IC+ELP      +I+  F +Y+  +G  +L+  
Sbjct: 205  YFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDRDFPNIREYFVHYQENEGQYTLESG 264

Query: 800  FFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVH 979
                    +V            + IL+ VN LVQ G LS   L   F+ L+ P R   V 
Sbjct: 265  SPFSHNLDVVPIVAPPQGIYIPFDILFKVNSLVQHGCLSGSELDNAFYCLVDPLRIN-VD 323

Query: 980  CILSALDEMYYSSP-SFNPEKILKKSIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTK 1150
             I  AL++MYYS    + P + LK          Y  ++    LD GLV + R Q+TP K
Sbjct: 324  FIEHALEKMYYSKDFCYEPARWLKDQYRMYLNSNYPLQSPSISLDNGLVYVRRVQITPCK 383

Query: 1151 IYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
            +Y C PE+NVSNRV+R F  ++D+FLRV
Sbjct: 384  VYFCGPEINVSNRVVRHFHEHIDNFLRV 411


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  169 bits (429), Expect = 2e-39
 Identities = 122/394 (30%), Positives = 197/394 (50%), Gaps = 11/394 (2%)
 Frame = +2

Query: 86   NGCVYACKVLPTKN--PRHETTQAIVQFERKLVAQKLC-GISEMELTYKLILLLYNDTHV 256
            +G VYA KV   K   PR     AIVQF  +  A+++  G +E  L Y            
Sbjct: 29   SGTVYAIKVRQPKKGGPR---VFAIVQFTNERYARQIITGAAERRLYY--------GRSY 77

Query: 257  LSVDPLERDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFI 436
            L+   +++D+V +PR     ++  ++Y GCQV+  ++  LWS+   V       M+K+  
Sbjct: 78   LNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSAQD-VCVSFGIGMRKLHF 136

Query: 437  VLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYSAPSVFYKEDSSSSADDAQGL 616
                +   Y L  S+ +I ++  +    R +K+LV+ +  AP +F KED   +      +
Sbjct: 137  SFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKEDQPINLLFGM-M 195

Query: 617  EYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSL-- 790
            ++Y  GSD  WIRTTDFT +  IGQ ++ C+ELP      D +  F NY   + +  L  
Sbjct: 196  DFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASPFLIE 255

Query: 791  QMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREK 970
                +    ++LV            ++IL+ +N LVQ   L  P L  D + LL P +  
Sbjct: 256  SGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACLPGPALDLDVYQLLNPKKYN 315

Query: 971  TV---HCILSALDEMYYSSPS-FNPEKILKKSIHARNTRRYADRNSY--LDGGLVRIHRA 1132
                 HC    L+++++   S + P + L+K     +++     +    LD GLV ++R 
Sbjct: 316  RALIDHC----LEKLFHLGESCYEPARWLRKQYKELSSKGKLPLSPTISLDDGLVYMYRV 371

Query: 1133 QVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
            QVTP ++Y   PEVNVSNRV+R +S+Y+++FLRV
Sbjct: 372  QVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRV 405


>gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
          Length = 1115

 Score =  169 bits (429), Expect = 2e-39
 Identities = 126/415 (30%), Positives = 200/415 (48%), Gaps = 5/415 (1%)
 Frame = +2

Query: 5    RTVKITNVPANTDAMXXXXXXXXXXXXNGCVYACKVLPTKN-PRHETTQAIVQFERKLVA 181
            +T++++  P+  +A              G V+A K+ P KN   +  + AIVQF+ +  A
Sbjct: 4    KTLQVSGFPSTVNA-DHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHA 62

Query: 182  QKLCGISEMELTYKLILLLYNDTHVLSVDPLERDLVKRPRRGPVEVATTRVYLGCQVNHN 361
              +   ++          L + +H L     ERD+V RPR     +   +++ GC +   
Sbjct: 63   SLVLNAAQRNA-------LRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKER 115

Query: 362  EYCVLWSSTGHVDFELCANMKKVFIVLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLV 541
               VLWS T  V  E    MK++   LI +  KY L  S+ SI  +  +       K+L+
Sbjct: 116  VLSVLWSGTD-VSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLL 174

Query: 542  MPLYSAPSVFYKEDS-SSSADDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELP 718
            + + +AP ++ +    S S  D     Y++  +D  W RTTDFT +  IGQ   + +ELP
Sbjct: 175  IQVQAAPKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILSLELP 234

Query: 719  NGAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLV 898
            +     +I+  F  Y+V     +LQ  +     +  V            Y+IL+ +N LV
Sbjct: 235  HICYLPNIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLV 294

Query: 899  QEGVLSWPTLKRDFFSLLQPTREKTVHCILSALDEM-YYSSPSFNPEKILKKSIHA-RNT 1072
            Q G LS PTL  +F+ L+ P  E+ +  I  AL++M Y      NP   L +     R +
Sbjct: 295  QNGTLSGPTLDDNFYRLVSPGYER-IDRIKRALEKMSYLKKTCLNPTNWLSEQYKKMRRS 353

Query: 1073 RRYADRNSYLDG-GLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
            R     N  LD  GLV ++R Q+TP K+Y   PE+NVSNRV+R ++  +D+FLR+
Sbjct: 354  RVLTSPNITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAADLDNFLRI 408


>ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polymerase 1-like [Setaria
            italica]
          Length = 1123

 Score =  169 bits (427), Expect = 3e-39
 Identities = 130/420 (30%), Positives = 194/420 (46%), Gaps = 10/420 (2%)
 Frame = +2

Query: 5    RTVKITNVPANTDAMXXXXXXXXXXXXNGCVYACKVLPTKNPRHETTQ----AIVQFERK 172
            RT++++   A TD+              G VYA K+   ++PR+ T      AIVQF+ +
Sbjct: 3    RTIQVSGF-ALTDSAEYVKDFLERIAGAGTVYALKL---RHPRNITATSKAFAIVQFQTQ 58

Query: 173  LVAQKLCGISEMELTYKLILLLYNDTHVLSVDPLERDLVKRPRRGPVEVATTRVYLGCQV 352
              A  +   ++          L +    L   P +RD+V RPR     +    ++LGC V
Sbjct: 59   ECASLVENAAQRNA-------LRSRCIYLKARPADRDIVPRPRIAMFSLDAAALHLGCLV 111

Query: 353  NHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGIKYMLVSSFGSIQRM--HHYGSASRG 526
              N    L+S   ++  +   +MKK++  L  + IKY L  S+ SI  M  H   +    
Sbjct: 112  KENILYTLFS-VRNISVQFGFDMKKIYFYLSYNLIKYKLELSYESIWEMQLHRPPAYLSQ 170

Query: 527  TKYLVMPLYSAPSVF-YKEDSSSSADDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSSI 703
            TK+L+  + +AP ++      S    +     +++  +D  W RT DFT +  IGQ S +
Sbjct: 171  TKFLLFQVQAAPKIYELLPRRSGLMYEDPFFNWFRDDTDEQWTRTIDFTPSASIGQSSIL 230

Query: 704  CMELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPTSRLVXXXXXXXXXXXXYQILYH 883
            C+E+P   +  +I   F  YK    +   Q  +     +  V            Y+IL+ 
Sbjct: 231  CLEVPQQCELPNIADYFVYYKEHNLDFECQKGYSYSCGNSFVPIVKSPDYIEVPYEILFK 290

Query: 884  VNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILSALDEMYYSSPSFNPEKILKKSIHA 1063
            +N LVQ G LS PTL  +FF L+ P      H   + L   Y  S   NP   L      
Sbjct: 291  INHLVQNGTLSGPTLDDNFFCLVSPKHVPIDHIKRALLKMSYLKSTCLNPTNWLALQYSK 350

Query: 1064 RNTRRYADRNSY---LDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
                RYA + S    LD GLV +HR QVTP K+Y   PE+NVSNRV+R FS  +D+FLR+
Sbjct: 351  IRKSRYALQRSSGISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADLDNFLRI 410


>gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
          Length = 1067

 Score =  168 bits (426), Expect = 4e-39
 Identities = 124/390 (31%), Positives = 188/390 (48%), Gaps = 8/390 (2%)
 Frame = +2

Query: 89   GCVYACKVLPTKNPRHET-TQAIVQFERKLVAQKLCGISEMELTYKLILLLYNDTHVLSV 265
            G VYA K+   KN    +   AIVQF+ +  A  +   ++ ++       L    + L V
Sbjct: 31   GNVYAVKLRHPKNVTATSRAYAIVQFQTEEHASLVKNAAQRKI-------LRRGHYYLKV 83

Query: 266  DPLERDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVF--IV 439
             P +RD+V RPR    ++    ++ GC +       LWS TG V  E   N+KK++  + 
Sbjct: 84   HPSDRDIVPRPRVSMFKLEDVTLHFGCLLKETILSALWSRTG-VSVEFGFNLKKIYFYLQ 142

Query: 440  LIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYSAPSVFYKEDSSSSADDAQGL- 616
            L +  I+Y L  S+ SI  +         TK+L++ + +AP ++ +    S       L 
Sbjct: 143  LPNSSIEYKLELSYESIWEIQLQRPPKSQTKFLLIQVQAAPKIYEQTPRRSGVMYEDPLF 202

Query: 617  EYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQM 796
             Y++  +D  W RTTDFT +  IGQ   +C+E+P      +I+  F+ Y     +   + 
Sbjct: 203  NYFRDHTDDQWTRTTDFTSSSSIGQSYILCLEVPRRCDLPNIRDYFFYYHEYNHDFECRS 262

Query: 797  PFFPMPT-SRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKT 973
              +P  + +R V            Y+IL+ +N LVQ G LS PT+   FF L+ P     
Sbjct: 263  GGYPYSSDTRFVPIVKSRGYVP--YEILFKINHLVQNGTLSGPTVDDSFFRLVSPAFVPI 320

Query: 974  VHCILSALDEM-YYSSPSFNPEKILKKSIHARNTRRYADR--NSYLDGGLVRIHRAQVTP 1144
             H I  AL+ M Y      NP   L +        RY     N  LD GLV ++R QVTP
Sbjct: 321  DH-IKRALEMMSYLKKTCLNPTSWLSEQYSKFRRSRYVQPSPNISLDDGLVYVYRVQVTP 379

Query: 1145 TKIYLCRPEVNVSNRVIRQFSRYMDDFLRV 1234
             K+Y   PE+NVSNRV+R FS  +++FLR+
Sbjct: 380  AKVYFYGPEINVSNRVVRNFSSDIENFLRI 409


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  167 bits (424), Expect = 6e-39
 Identities = 122/384 (31%), Positives = 189/384 (49%), Gaps = 4/384 (1%)
 Frame = +2

Query: 95   VYACKVLPTKNPRHETTQAIVQFERKLVAQKLCGISEMELTYKLILLLYNDTHVLSVDPL 274
            VYA K+   K  +     AIVQF R   A  +  ++   L Y            L    +
Sbjct: 32   VYALKIRQHK--KSGRAFAIVQFTRSSDAGLIIRLANQRLYY--------GRSYLKAREM 81

Query: 275  ERDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHG 454
            E D+V +PR     +    V  GCQV+  ++ VLW +  +V       M+K+  +L    
Sbjct: 82   ETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKAD-NVTLNFGTGMRKLEFLLSYCS 140

Query: 455  IKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYSAPSVFYKE-DSSSSADDAQGLEYYKY 631
             KY L   + +I ++      S+ +K+L++ L+ AP ++ KE  +S    D   L Y+K 
Sbjct: 141  SKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKD 200

Query: 632  GSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFPM 811
              D  W+RTTDFT +  IGQ S + +ELP+  +  + +  F  YK  +G L L+      
Sbjct: 201  MPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYS 260

Query: 812  PTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILS 991
                LV            ++IL+ VNLLVQ G +  P L   F+ L+ P R   V+ I  
Sbjct: 261  CNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHKVY-IDH 319

Query: 992  ALDEMYYSSPS-FNPEKILKKSIH--ARNTRRYADRNSYLDGGLVRIHRAQVTPTKIYLC 1162
            AL+++YY     + P + L +     +R+ +        LD GLV + R Q+TP+++Y C
Sbjct: 320  ALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFC 379

Query: 1163 RPEVNVSNRVIRQFSRYMDDFLRV 1234
             PE+NVSNRV+RQF   +D+FLR+
Sbjct: 380  GPEINVSNRVLRQFHNDIDNFLRI 403


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  167 bits (423), Expect = 8e-39
 Identities = 121/384 (31%), Positives = 188/384 (48%), Gaps = 4/384 (1%)
 Frame = +2

Query: 95   VYACKVLPTKNPRHETTQAIVQFERKLVAQKLCGISEMELTYKLILLLYNDTHVLSVDPL 274
            VYA K+   K  +     AIVQF R   A  +  ++   L Y            L    +
Sbjct: 32   VYALKIRQHK--KSGRAFAIVQFTRSSDAGLIIRLANQRLYY--------GRSYLKAREM 81

Query: 275  ERDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHG 454
            E D+V +PR     +    V   C V+  ++ VLW +  +V       M+K+  +L    
Sbjct: 82   ETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKAD-NVTLNFGTGMRKLEFLLSYCS 140

Query: 455  IKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYSAPSVFYKE-DSSSSADDAQGLEYYKY 631
             KY L   + +I ++      S+ +K+L++ L+ AP ++ KE  +S    D   L Y+K 
Sbjct: 141  SKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKD 200

Query: 632  GSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFPM 811
              D  W+RTTDFT +  IGQ S +C+ELP+  +  + +  F  YK  +G L L+      
Sbjct: 201  MPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYS 260

Query: 812  PTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILS 991
                LV            ++IL+ VNLLVQ G +  P L   F+ L+ P R   V+ I  
Sbjct: 261  CNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHKVY-IDH 319

Query: 992  ALDEMYYSSPS-FNPEKILKKSIH--ARNTRRYADRNSYLDGGLVRIHRAQVTPTKIYLC 1162
            AL+++YY     + P + L +     +R+ +        LD GLV + R Q+TP+++Y C
Sbjct: 320  ALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFC 379

Query: 1163 RPEVNVSNRVIRQFSRYMDDFLRV 1234
             PE+NVSNRV+RQF   +D+FLR+
Sbjct: 380  GPEINVSNRVLRQFHNDIDNFLRI 403