BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00018763
         (2937 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   739   0.0  
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   723   0.0  
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   717   0.0  
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   716   0.0  
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro...   713   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   711   0.0  
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...   711   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   711   0.0  
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   710   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   708   0.0  
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...   707   0.0  
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       706   0.0  
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   706   0.0  
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   705   0.0  
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   704   0.0  
gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tu...   702   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   702   0.0  
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   702   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   700   0.0  
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   699   0.0  

>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  739 bits (1907), Expect = 0.0
 Identities = 419/879 (47%), Positives = 557/879 (63%), Gaps = 18/879 (2%)
 Frame = +2

Query: 347  RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 526
            RTV+++  P GT A  +   LE I    G VY  KI    +  +    AIVQ   S  A 
Sbjct: 76   RTVQVSGFPQGTCAEAVKKFLESITGF-GTVYHLKIRIHKSKPNSRVFAIVQFTTSKSAE 134

Query: 527  KLCTTLP-------ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 685
             + +  P        ++ +    +  D+V  PR +   + + +L+FG Q+S   +A+LW+
Sbjct: 135  VIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILWS 194

Query: 686  CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAP 865
             +++V+ EF   +KK+F  L   G+ Y+L L + N+  +      +    YLV+Q+  AP
Sbjct: 195  -NTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAP 253

Query: 866  KIYYKEPS--SDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDA 1039
            +I+ K  S  SD+ D   +  ++K   D QW+R+ DFT + SIG S+S+CL L +G +  
Sbjct: 254  RIFQKPLSFSSDIYDSP-LFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIP 312

Query: 1040 VIKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1219
             I+ +F  YK+I    +L           LVP           YKILF+VN+LVQ G L 
Sbjct: 313  NIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLV 372

Query: 1220 WPALGREFFRLLEPKSEEYVGRILFALQEISYS--GPTYTPEKSLKKIIYDKKARRYADF 1393
             P L  EF+ LL      +V R L  +  ++     P    ++  KK  Y    RR +  
Sbjct: 373  GPTLDTEFYNLLNGLPSPFVERSLEDISRLTNCCLEPAKWLQEQYKK--YRNLPRRPSPA 430

Query: 1394 NTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFA 1573
               L+ GL+ VHRVQVTP+KVY +GPEV+VSNRV+RQFS YID+F+R+SFIDED   + +
Sbjct: 431  AISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSIRS 490

Query: 1574 TDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQ 1750
            TDL ++M +G E+K+T +Y R+LS            FEFLAFSSSQLR++S WMF+  + 
Sbjct: 491  TDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAWMFSPIDG 550

Query: 1751 VTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYV 1930
            +TA  IR WMG+F  IRNVAKCAARMGQ F SS +TL V   EVE  +DI     +  YV
Sbjct: 551  ITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDIK----NGKYV 606

Query: 1931 FSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKF 2107
            FSDGIGKIS+  A+++A+ CGC +  PSAFQIRYGGYKGVVA+DPTS YKLSLR SMRK+
Sbjct: 607  FSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSMRKY 666

Query: 2108 DSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMAL 2287
             S N  +DVL+++KF+PCFLNRQ+ITLLSTLGV+D  FE  Q++ +++LD IL   + A 
Sbjct: 667  SSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPESAF 726

Query: 2288 EVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCL 2467
            E L++MS GEN NV+  ML CGY P  EP+LSM+L  FR  KL ELK K RIF+P GR +
Sbjct: 727  EALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNGRSM 786

Query: 2468 MGCLDEYRILEYGEIFVQVTE--PRSSLHFGTT---GNQTSIRKRIITGTVIVAKNPCLH 2632
            MGCLDE  ILEYG++FVQ +    R    FG +    + +  R R++ G VIVAKNPCLH
Sbjct: 787  MGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNPCLH 846

Query: 2633 PGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVD 2812
            PGDVRIL A+D P LHH+V+CVVFPQKGKRPHPNECSGSDLDGD+YFV WD  LIP    
Sbjct: 847  PGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIPCHQG 906

Query: 2813 MPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
             PM+Y   P   L+  VTIE+I+E+F NYM+NDS+GII+
Sbjct: 907  TPMEYEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIA 945


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score =  723 bits (1867), Expect = 0.0
 Identities = 410/879 (46%), Positives = 555/879 (63%), Gaps = 18/879 (2%)
 Frame = +2

Query: 347  RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDR----- 511
            +T+++   P   + + + T +E    E G V++ K L+    R   A AI+Q        
Sbjct: 3    KTIELYGFPTSVNVSDVKTFVEQYTGE-GTVFAIK-LRHGKGRVPRAFAIIQFTTANSAT 60

Query: 512  SFLARK---LCTTLPASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 682
            S ++R    L T    ++ ++A  + RD+V +PR     +   +L FGCQ+S  R++VLW
Sbjct: 61   SMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLW 120

Query: 683  TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 862
                DV   F S ++K+    +   + Y+L LS+ N+  +  +   +    YL+IQ+  A
Sbjct: 121  K-KQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGA 179

Query: 863  PKIYYKE-PSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDA 1039
            P+++  + P+S       +  FFK   D QWIR  DFT    IG S++ICLEL +G +  
Sbjct: 180  PRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLP 239

Query: 1040 VIKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1219
              + +F  Y++     +L           LVP           Y ILF+VN+LVQ   L+
Sbjct: 240  NFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLA 299

Query: 1220 WPALGREFFRLLEPKS--EEYVGRILFALQEISYSGP-TYTPEKSL----KKIIYDKKAR 1378
             PAL  +F+RL++P+    E++    +AL++I YS    Y P K L    K  +  K   
Sbjct: 300  GPALDGDFYRLVDPRRMPREFIE---YALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHP 356

Query: 1379 RYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDE 1558
            R    +  LD GL+ V RVQ+TP KVY  GPE++VSNRV+R F E+ID+F+RVSF+DE+ 
Sbjct: 357  RSPAIS--LDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEEL 414

Query: 1559 RQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFA 1738
             +LF+TDL  +  N   K T++Y RILS            FEFLAFSSSQLRE+SLWMFA
Sbjct: 415  DKLFSTDLSSRSQN---KKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFA 471

Query: 1739 SNEQ-VTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDIT-IER 1912
              E   TA  IR WMGNF  IRNVAK AAR+GQ F SS +TL V+  EVE   D+  +  
Sbjct: 472  PTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTY 531

Query: 1913 DSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRP 2092
            D + YVFSDGIGKIS+  A+++A  CG D  PSAFQIRYGGYKGVVA+DP S YKLSLR 
Sbjct: 532  DGNEYVFSDGIGKISLEFAQKVAKKCGYDCTPSAFQIRYGGYKGVVAVDPKSCYKLSLRK 591

Query: 2093 SMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDH 2272
            SMRK+DS+N  +DVL+ +KF+PC+LNRQ+I+LLSTLG++D+ FE  Q+E +N+L+ IL  
Sbjct: 592  SMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTD 651

Query: 2273 KDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVP 2452
               A EVL +MS GE  NV+  ML CGY P +EP+LSM+L  FRA+KLLEL+ K+RIF+P
Sbjct: 652  SLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIP 711

Query: 2453 KGRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLH 2632
            KGR +MGCLDE R LEYG++FVQ +  R         +    +  ++ G V+VAKNPCLH
Sbjct: 712  KGRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNYMVKGKVVVAKNPCLH 771

Query: 2633 PGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVD 2812
            PGDVR+L+AVD P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD  LIP    
Sbjct: 772  PGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSRPI 831

Query: 2813 MPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
             PMDY AP  + L+  V IE+++E+FANY++NDS+GII+
Sbjct: 832  DPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIA 870


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score =  717 bits (1852), Expect = 0.0
 Identities = 412/882 (46%), Positives = 543/882 (61%), Gaps = 21/882 (2%)
 Frame = +2

Query: 347  RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 520
            +T+ I+  P    A+ +   LEG     G VY+ K+   K+   R    +AIVQ   +  
Sbjct: 3    KTIHISGFPSHVTADAVKNFLEGHTGP-GTVYAIKVRPPKRGGGR---LYAIVQFTSATQ 58

Query: 521  ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 685
            A  + +         S+ ++A     D+V KPR     +    L FGCQVS  ++ VLW 
Sbjct: 59   AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118

Query: 686  CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAP 865
             + D+   F   ++K+   L  + + YRL LS+  +  +  +        YL+IQ+  AP
Sbjct: 119  GNVDL-VTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAP 177

Query: 866  KIYYK-EPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 1042
            +IY K  P+S       +  FFK  SD+QW+RTTDFT + SIG S+S+CL+L +G +   
Sbjct: 178  RIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPP 237

Query: 1043 IKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSW 1222
             K +F  Y++      L          R +            YKILF++NALVQ G + W
Sbjct: 238  FKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPW 297

Query: 1223 PALGREFFRLLEP------KSEEYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 1384
            P L   F+RL+E       +  E+    LF L+E +Y    +  E+      Y K +R  
Sbjct: 298  PLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQ------YRKYSRHP 351

Query: 1385 ADFNTY-LDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 1561
             +     LDDGL+ V RVQ+TP KV+  GPEV+VSNRV+R FS+YID+F+RVSF+DE+  
Sbjct: 352  PNSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWD 411

Query: 1562 QLFATDLCQKMPN-GEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFA 1738
            ++ +TDL  +M +  E   T +Y RILS            F+FLAFSSSQLR++SLWMFA
Sbjct: 412  KMRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFA 471

Query: 1739 SNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDS 1918
            S   + A  IRAWMG+F  I+N AK AAR+GQ F SS + L V  +E E   DI +++  
Sbjct: 472  SGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGE 531

Query: 1919 DSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 2098
              YVFSDGIGKIS   A+E+A  CG   VPSAFQIRYGGYKGVVA+DP S+ KLSLR SM
Sbjct: 532  IKYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSM 591

Query: 2099 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKD 2278
             KF+S+N  +DVL  +K++PCFLNRQ+ITL+STLGVRDE FE  Q E + +LD IL    
Sbjct: 592  CKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPL 651

Query: 2279 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKG 2458
             A E L++MS GEN N++  ML+CGY P  EPYLSM+L  FRA+KLLEL+ K+RIF+P G
Sbjct: 652  KAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNG 711

Query: 2459 RCLMGCLDEYRILEYGEIFVQVTEPR-----SSLHFGTTGNQTSIRKRIITGTVIVAKNP 2623
            R +MGCLDE R LEYG++FVQ++  R      S  F   G +  +   +I G V VAKNP
Sbjct: 712  RAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHL---VIEGNVTVAKNP 768

Query: 2624 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 2803
            CLHPGDVR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD  LIP 
Sbjct: 769  CLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPS 828

Query: 2804 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
                PMDY   P   L+R VT EDIQE+F NYM+NDS+GII+
Sbjct: 829  RQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIA 870


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  716 bits (1847), Expect = 0.0
 Identities = 415/878 (47%), Positives = 549/878 (62%), Gaps = 17/878 (1%)
 Frame = +2

Query: 347  RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 520
            +T+++   P+G + + +   LE  L   G VY+ K+   K+  PR     AIVQ      
Sbjct: 3    KTIQVFGFPVGVNTDDVKIFLER-LTGSGTVYAIKVRQPKRGGPR---VFAIVQFTSERH 58

Query: 521  ARKLCTTLPASTL------MQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 682
            AR L  T+ A  L      ++A  + +D+V KPR S   I+  +++FGCQVS  +   LW
Sbjct: 59   AR-LIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLW 117

Query: 683  TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 862
            +  + V   F + ++KL   ++     YRL LS+ N+  +  +S       +LVIQV  A
Sbjct: 118  SAHN-VCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGA 176

Query: 863  PKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 1042
            PKI+ KE    +     + +F+  GSD QWIRTTDFT +  IG ST+ CLEL        
Sbjct: 177  PKIFEKE-DQPVNFLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVPD 235

Query: 1043 IKNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGIL 1216
             + +F NY + R +  L    +       +LVP           ++ILF+VN LVQ   L
Sbjct: 236  FRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNACL 295

Query: 1217 SWPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARR 1381
              PAL  EF++LL PK  +     +    LF L E  Y    +  E+  KK+   KK   
Sbjct: 296  PGPALDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREE-YKKLNSSKKLPL 354

Query: 1382 YADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 1561
                +  LDDGL+ ++RV VTP +VY  GPEV+VSNRV+R +SEYI++F+R+SF+DED  
Sbjct: 355  SPTIS--LDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLE 412

Query: 1562 QLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFAS 1741
            ++ + DL  +  +  ++ TKLY RI S            FEFLAFSSSQLRE+S WMFA 
Sbjct: 413  KIHSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 470

Query: 1742 NEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSD 1921
             +++TA  IRAWMG+F  IRNVAK AAR+GQ FSSS++TL V   E+E   D+       
Sbjct: 471  RDRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDT 530

Query: 1922 SYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 2098
             YVFSDGIGKIS   A ++A  CG  ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM
Sbjct: 531  RYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 590

Query: 2099 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKD 2278
             KF+S N  +DVL+W+K++PC+LNRQIITLLSTLGV+D  FE  Q+E ++RLD IL    
Sbjct: 591  SKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDPL 650

Query: 2279 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKG 2458
             A E L +M+ GEN N++  +L CGY P  EP+LSM+L  FRA+KLLEL+ K RIF+P G
Sbjct: 651  EAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPGG 710

Query: 2459 RCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKR-IITGTVIVAKNPCLHP 2635
            R +MGCLDE R LEYG++ VQ + P            T   KR IITG V+VAKNPCLHP
Sbjct: 711  RSMMGCLDETRTLEYGQVVVQYSNP------------TMPGKRYIITGPVVVAKNPCLHP 758

Query: 2636 GDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDM 2815
            GDVR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YF+CWD  LIPP    
Sbjct: 759  GDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIPPRTSE 818

Query: 2816 PMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
            PMDY   P   L+  VTIE+++E+FANY++NDS+GII+
Sbjct: 819  PMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIA 856


>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao]
          Length = 1109

 Score =  713 bits (1840), Expect = 0.0
 Identities = 406/873 (46%), Positives = 546/873 (62%), Gaps = 12/873 (1%)
 Frame = +2

Query: 347  RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 526
            +T++++  P    A ++ T LE +   K  VY+ KI +Q N    YA  IVQ  +S  A 
Sbjct: 3    KTIQVSRFPSNVHAEEVKTFLE-LYTGKETVYALKIRQQKNGGRAYA--IVQFTKSTDAE 59

Query: 527  KLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCD 691
             +           S+ ++A  +  D+V KPR     +    LHFGCQVS+ ++ VLW  +
Sbjct: 60   LIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE-E 118

Query: 692  SDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKI 871
             DV   F   ++KL   L+   + YRL L + N+  +  +   +    YL+IQ++ AP+I
Sbjct: 119  VDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRI 178

Query: 872  YYKEP-SSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIK 1048
            Y K+  SS +     +  +F    D+QW+RTTDFT++  IG S+ +CLEL    +    +
Sbjct: 179  YEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFR 238

Query: 1049 NSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPA 1228
             +F  YK+      L           LVP           Y+ILF++N LVQ G +  PA
Sbjct: 239  ENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPA 298

Query: 1229 LGREFFRLLEPKSEEYVGRILFALQEISYSGPT-YTPEKSL----KKIIYDKKARRYADF 1393
            L   F+RL+ P   + V  I  AL+++ Y     + P K L    K  I  KK       
Sbjct: 299  LDANFYRLVNPCRIDKV-YIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVI 357

Query: 1394 NTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFA 1573
            +  LDDGL+ V RVQ+TP++VY  GPE++VSNRV+R F + ID+F+R++F+DE+  ++ +
Sbjct: 358  S--LDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHS 415

Query: 1574 TDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQV 1753
            TDL  +      + T++Y RILS            FEFLAFSSSQLRE+S WMFAS E +
Sbjct: 416  TDLLTR-----NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGL 470

Query: 1754 TAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVF 1933
            TA  IR WMG F  IRNVAK AAR+GQ FSSS +TL V + E+E  +D+ I+RD  +YVF
Sbjct: 471  TAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVF 530

Query: 1934 SDGIGKISVALAEELAVHCGCD-YVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFD 2110
            SDGIGKIS   A+++A  C  +   PSAFQIR GG+KGVVA+DPTSS KLSLR SM K++
Sbjct: 531  SDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYE 590

Query: 2111 SENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMALE 2290
            SEN  +DVL+W+K++PCFLNRQ+ITLLSTLGV D  FE  Q+E +++L+ IL     A E
Sbjct: 591  SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQE 650

Query: 2291 VLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLM 2470
             L++MS GEN N++  ML CGY P  EP+LSM+L  FRA+KLLEL+ K+RIFV  GR +M
Sbjct: 651  ALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMM 710

Query: 2471 GCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRI 2650
            GCLDE R L+YG++FVQV+  RS   F            I+ G V+VAKNPCLHPGDVR+
Sbjct: 711  GCLDETRTLDYGQVFVQVSGSRSEQRF------------IVQGKVVVAKNPCLHPGDVRV 758

Query: 2651 LRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYA 2830
            L AV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD  LIP     PMDY+
Sbjct: 759  LTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYS 818

Query: 2831 APPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
              P   L   VTIE+++E+F NY++NDS+GII+
Sbjct: 819  PAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIA 851


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  711 bits (1834), Expect = 0.0
 Identities = 407/882 (46%), Positives = 541/882 (61%), Gaps = 21/882 (2%)
 Frame = +2

Query: 347  RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHV-YAHAIVQLDRSFLA 523
            +T+++   P G  A  +   LE      G VY+ K+  +T  + V   +AIVQ      A
Sbjct: 3    KTIQVFGFPAGVTAEAVKDFLES-KTGGGTVYALKL--RTPKKGVGRLYAIVQFTTKEAA 59

Query: 524  RKL----CTTLP---ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 682
              +    C T       + + A  + +D V +PR     +    LHFGC++S+ ++AVLW
Sbjct: 60   DTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLW 119

Query: 683  TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 862
                +V   F   ++K+   L+  G  YRL L + N+  +  +        YL+IQ+  A
Sbjct: 120  R-GVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGA 178

Query: 863  PKIYYKE-PSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDA 1039
            P+I+ K   S D+     +  FFK   D+QW+RTTDFT +  IG ST +C+EL    +  
Sbjct: 179  PRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELP 238

Query: 1040 VIKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1219
              K +F  YK+  +   L           LVP           Y+ILF++N LVQ G ++
Sbjct: 239  DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVA 298

Query: 1220 WPALGREFFRLLEPKSE-------EYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKAR 1378
             P L   F+RL++P          E+    L+ L+E  Y    +  ++  K +    K  
Sbjct: 299  GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPS 358

Query: 1379 RYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDE 1558
              A     LDDGL+ VHRVQVTP++VY  GPE++VSNRV+R F   ID+F+R+SFIDED 
Sbjct: 359  SPA---ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 415

Query: 1559 RQLFATDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMF 1735
             ++ +TDL  +  +  +   T++Y RILS            FEFLAFSSSQLRESS WMF
Sbjct: 416  DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF 475

Query: 1736 ASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERD 1915
            AS   +TA  IR WMGNF  IRNVAK AAR+GQ FSSSK+TL V+  E+E   D+ IE  
Sbjct: 476  ASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 535

Query: 1916 SDSYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRP 2092
               YVFSDGIGK+S   A ++A  CG  D  PSAFQIRYGGYKGVVA DPTSS KLSLR 
Sbjct: 536  KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRD 595

Query: 2093 SMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDH 2272
            SMRK++SE   +DVL+W+K++PCFLNRQ+I+LLSTLG+ DE FE  Q+E + +LD IL  
Sbjct: 596  SMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 655

Query: 2273 KDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVP 2452
               A E L++MS GEN N++  +L CGY P  EP+LSM+L  FRA+KLLEL+ K RIF+P
Sbjct: 656  PLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 715

Query: 2453 KGRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKR---IITGTVIVAKNP 2623
             GR +MGCLDE R L YG++FVQ++        G +   +S R R   I+ G V+VAKNP
Sbjct: 716  NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 775

Query: 2624 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 2803
            CLHPGDVR+L+AV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ LIPP
Sbjct: 776  CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 835

Query: 2804 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
              D PMDY     + L+  V IED++E+F NY++NDS+GII+
Sbjct: 836  QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIA 877


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
            gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
            Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
            AltName: Full=RNA-directed RNA polymerase 1
            gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
            [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
            putative RNA-directed RNA polymerase [Arabidopsis
            thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
            polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  711 bits (1834), Expect = 0.0
 Identities = 411/876 (46%), Positives = 544/876 (62%), Gaps = 15/876 (1%)
 Frame = +2

Query: 347  RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 520
            +T+++   P G  A ++   LE  L   G VY+ K+   K+  PR    +AIVQ      
Sbjct: 3    KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VYAIVQFTSERH 58

Query: 521  ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 685
             R + T          + ++A  + +D+V KPR S   I+  ++ FGCQVS  ++  LW+
Sbjct: 59   TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118

Query: 686  CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAP 865
               DV   F   ++KL    +     YRL LS+ N+  +  +S       +LVIQV  AP
Sbjct: 119  AQ-DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 177

Query: 866  KIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 1045
            KI+ KE    +     I +F+  GSD QWIRTTDFT +  IG ST+ CLEL         
Sbjct: 178  KIFEKE-DQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDF 236

Query: 1046 KNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1219
            + +F NY + R +  L    +        LVP           ++ILF++N LVQ   LS
Sbjct: 237  RENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLS 296

Query: 1220 WPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 1384
             PAL  +F+RLL  K  +     +    LF L E  Y  P +      KK I   K +  
Sbjct: 297  GPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYE-PAHWLRDEYKKWI--SKGKLP 353

Query: 1385 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 1564
                  LDDGL+ ++RVQVTP +VY  GPEV+VSNRV+R +S+YI++F+RVSF+DED  +
Sbjct: 354  LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 413

Query: 1565 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1744
            + + DL  +  +  ++ TKLY RI S            FEFLAFSSSQLRE+S WMFA  
Sbjct: 414  VRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 471

Query: 1745 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1924
            +++TA  IRAWMG+F  IRNVAK AAR+GQ FSSS++TL V   E+E   D+ I      
Sbjct: 472  DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 531

Query: 1925 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 2101
            YVFSDGIGKIS   A ++A  CG  ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM 
Sbjct: 532  YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 591

Query: 2102 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDM 2281
            KF+SEN  +DVL+W+K++PC++NRQ+ITLLSTLGV D  FE  Q+E ++RLD IL H   
Sbjct: 592  KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 651

Query: 2282 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 2461
            A E L +M+ GEN N++  ++ CGY P  EP+LSM+L  FRA+KLLEL+ K RIF+  GR
Sbjct: 652  AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 711

Query: 2462 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGD 2641
             +MGCLDE R LEYG++ VQ ++P               R+ IITG V+VAKNPCLHPGD
Sbjct: 712  SMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHPGD 760

Query: 2642 VRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPM 2821
            VR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ L+PP    PM
Sbjct: 761  VRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPM 820

Query: 2822 DYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
            DY   P   L+  VTIE+++E+FANY++NDS+GII+
Sbjct: 821  DYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIA 856


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  711 bits (1834), Expect = 0.0
 Identities = 406/882 (46%), Positives = 537/882 (60%), Gaps = 21/882 (2%)
 Frame = +2

Query: 347  RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 526
            +T+++  +P    AN++   LE    E G + + +I KQ        HA VQ     LA 
Sbjct: 3    KTIQVYGVPSNVSANEIKEFLEKYTGE-GTIEALEI-KQPKSGVSMTHAKVQFTSLRLAE 60

Query: 527  KLCTTLP----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDS 694
             + +           ++A  +  D++ KPR     +    LHFG Q+S+ R+ VLW    
Sbjct: 61   LIISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKA-I 119

Query: 695  DVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIY 874
            +V  +F   ++K +  L+     Y+L LS  N+  +           +L+IQ+  AP+IY
Sbjct: 120  NVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIY 179

Query: 875  YKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNS 1054
             K+ S+          +FK   D+QW+R  DFT + SIG S+++CLEL  G++      +
Sbjct: 180  EKDVSA--------LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCEN 231

Query: 1055 FYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALG 1234
            F  YK+      L           LVP           +KILF++N LVQ G LS P L 
Sbjct: 232  FARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLD 291

Query: 1235 REFFRLLEPKSEEYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRYADFNTY---- 1402
              FFR ++P+    +  I  AL+++ Y          L++  Y+     +  + TY    
Sbjct: 292  TNFFRWVDPQRIN-ISFIEHALEKLYY----------LEECCYEPVRWLHEQYRTYISKQ 340

Query: 1403 --------LDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDE 1558
                    LD GL+ V RVQ+TP KVY  GPEV+VSNRV+R + E ID+F+RVSF+DE+ 
Sbjct: 341  VAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENS 400

Query: 1559 RQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFA 1738
             ++ +T +  +M N E + T +Y RILS            F+FLA SSSQLR++S WMFA
Sbjct: 401  EKIHSTVISPRMSN-EGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFA 459

Query: 1739 SNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDS 1918
            S   +TA  IR+ MG+F  IRNVAK AAR+GQ FSSSK+TL V + E+E   DI   RD 
Sbjct: 460  SRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDG 519

Query: 1919 DSYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPS 2095
             +YVFSDGIGKIS  LA  +A+ CGC +  PSAFQIRYGGYKGVVA+DPTSS KLSLR S
Sbjct: 520  TTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKS 579

Query: 2096 MRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHK 2275
            M K++SEN N+DVLSW+K+RPCFLNRQ+ITLLSTLGV+D  FE  Q+E +++LD IL   
Sbjct: 580  MFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDP 639

Query: 2276 DMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPK 2455
              A E L++MS GEN N++  ML CGY P  EP+LSM+L  FRAAKLLEL+ K RIFVP 
Sbjct: 640  LRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPN 699

Query: 2456 GRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTT----GNQTSIRKRIITGTVIVAKNP 2623
            GR +MGCLDE R LEYGE+FVQ++       FG +    G+ +     I+ G V+VAKNP
Sbjct: 700  GRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNP 759

Query: 2624 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 2803
            CLHPGDVRIL AVD P LHH+VDCVVFPQKG RPHP+ECSGSDLDGD+YFVCWD  LIPP
Sbjct: 760  CLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPP 819

Query: 2804 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
                PMDY   P   L+  V IE+++E+F NY+ ND +GII+
Sbjct: 820  RQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIA 861


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  710 bits (1832), Expect = 0.0
 Identities = 410/877 (46%), Positives = 545/877 (62%), Gaps = 16/877 (1%)
 Frame = +2

Query: 347  RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 520
            +T+++   P G  A ++   LE  L   G VY+ K+   K+  PR     AIVQ      
Sbjct: 3    KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VFAIVQFTNEIY 58

Query: 521  ARKLCTTLPASTL------MQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 682
            AR++ T      L      + A  + +D+V KPR S  +I+  +++FGCQVS      LW
Sbjct: 59   ARQIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLW 118

Query: 683  TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 862
            +   DV   F   ++KL    +     YRL LS+ N+  +  +S       +LVIQV  A
Sbjct: 119  SAQ-DVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGA 177

Query: 863  PKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 1042
            PKI+ KE    +     + +F+  GSD QWIRTTDFT +  IG ST+ CLEL        
Sbjct: 178  PKIFEKE-DQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 236

Query: 1043 IKNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGIL 1216
             + +F NY + R +  L    +       +LVP           ++ILF++N LVQ   L
Sbjct: 237  FRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACL 296

Query: 1217 SWPALGREFFRLLEPKSEEYVGRILF--ALQEISYSGPT-YTPEKSLKKIIYD--KKARR 1381
              PAL  + ++LL PK    + R L    L+++ Y G + Y P + L+K   +   K + 
Sbjct: 297  PGPALDLDVYQLLNPKK---IDRALIDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKL 353

Query: 1382 YADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 1561
                   LDDGL+ ++RVQVTP +VY  GPEV+VSNRV+R +S+YI++F+RVSF+DED  
Sbjct: 354  PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 413

Query: 1562 QLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFAS 1741
            ++ + DL  +  +  ++ TKLY RI S            FEFLAFSSSQLRE+S WMFA 
Sbjct: 414  KVRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 471

Query: 1742 NEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSD 1921
             E +T+  IRAWMG+F  IRNVAK AAR+GQ FSSS++TL V   E+E   D+ I     
Sbjct: 472  IEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGT 531

Query: 1922 SYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 2098
             YVFSDGIGKIS   A  +A  CG  ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM
Sbjct: 532  RYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 591

Query: 2099 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKD 2278
             KF+SEN  +DVL+W+K++PC++NRQ+ITLLSTLGV D  FE  Q+E ++RLD IL    
Sbjct: 592  SKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILTDPL 651

Query: 2279 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKG 2458
             A E L +M+ GEN N++  ++ CGY P  EP+LSM+L  FRA+KLLEL+ K RIF+  G
Sbjct: 652  EAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGG 711

Query: 2459 RCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPG 2638
            R +MGCLDE R LEYG++ VQ ++P               R+ IITG V+VAKNPCLHPG
Sbjct: 712  RSMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHPG 760

Query: 2639 DVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMP 2818
            DVR+L AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ LIPP    P
Sbjct: 761  DVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEP 820

Query: 2819 MDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
            MDY   P   L+  VTIE+++E+FANY++NDS+GII+
Sbjct: 821  MDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIA 857


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  708 bits (1828), Expect = 0.0
 Identities = 404/880 (45%), Positives = 540/880 (61%), Gaps = 18/880 (2%)
 Frame = +2

Query: 344  SRTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLA 523
            S+T+++   P    A+++   LE    E G + + +I KQ        HA VQ     LA
Sbjct: 2    SKTIQVYGFPSIVSADEIKEFLEKYTGE-GTIEALEI-KQPRSGASMTHAKVQFTSFELA 59

Query: 524  RKLCTTLPAST-----LMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTC 688
              + T            ++A  +  D++ KPR     +    LHFGCQ+S  R+ VLW  
Sbjct: 60   EFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKA 119

Query: 689  DSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPK 868
              +V  +F S ++K +  L+     Y+L LS+ N+  +           +L+IQ+  AP+
Sbjct: 120  -INVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178

Query: 869  IYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIK 1048
            IY K+          ++ +FK   D+QW+R  DFT +  IG S ++CLEL  G++    +
Sbjct: 179  IYEKDVPV-------LSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFR 231

Query: 1049 NSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPA 1228
             +F  YK+      L           LVP           ++ILF++N LVQ G LS P 
Sbjct: 232  ENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPT 291

Query: 1229 LGREFFRLLEPKSE-----EYVGRILFALQEISYSGPTYTPEKS---LKKIIYDKKARRY 1384
            L   FFRL++P+       E+    L+ L+E  Y    +  E+    +KK +    A   
Sbjct: 292  LDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKPVAGSPA--- 348

Query: 1385 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 1564
                  LD GL+ V RVQ+TP KVY  GPEV+VSNRV+R + E ID+F+RVSF+DE+  +
Sbjct: 349  ----ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEK 404

Query: 1565 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1744
            + +T +  +M   E + T +Y RILS            F+FLAFSSSQLR++S WMFAS 
Sbjct: 405  IHSTVISPRMSK-EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASR 463

Query: 1745 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1924
              +TA  IR+WMG+F  IRNVAK AAR+GQ FSSSK+TL V + E+E+  DI I +   +
Sbjct: 464  PGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTT 523

Query: 1925 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 2101
            YVFSDGIGKIS  LA  +A+ CGC    PSAFQIRYGGYKGVVA+DPTSS KLSLR SM 
Sbjct: 524  YVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMF 583

Query: 2102 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDM 2281
            K++S+N N+DVL+W+K++P FLNRQ+ITLLSTLGV+D  FE  Q+  +++LD IL     
Sbjct: 584  KYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVA 643

Query: 2282 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 2461
            A E L++MS GEN NV+  ML CGY P  EP+LSM+L  FRAAKLLEL+ K RIFVP GR
Sbjct: 644  AQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGR 703

Query: 2462 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTT----GNQTSIRKRIITGTVIVAKNPCL 2629
             +MGCLDE R LEYGE+FVQ++       FG +    G+ +     I+ G ++VAKNPCL
Sbjct: 704  SMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCL 763

Query: 2630 HPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDV 2809
            HPGDVR+L AV+ P LHH+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD  LIPP  
Sbjct: 764  HPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQ 823

Query: 2810 DMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
              PMDY   P   L+  V IE+++E+F NY++NDS+GII+
Sbjct: 824  INPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIA 863


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  707 bits (1826), Expect = 0.0
 Identities = 410/876 (46%), Positives = 543/876 (61%), Gaps = 15/876 (1%)
 Frame = +2

Query: 347  RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 520
            +T+++   P G  A ++   LE  L   G VY+ K+   K+  PR    +AIVQ      
Sbjct: 3    KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VYAIVQFTSERH 58

Query: 521  ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 685
             R + T          + ++A  + +D+V KPR S   I+  ++ FGCQVS  ++  LW+
Sbjct: 59   TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118

Query: 686  CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAP 865
               DV   F   ++KL    +     YRL LS+ N+  +  +S       +LVIQV  AP
Sbjct: 119  AQ-DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 177

Query: 866  KIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 1045
            KI+ KE    +     I +F+  GSD QWIRTTDFT +  IG ST+ CLEL         
Sbjct: 178  KIFEKE-DQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDF 236

Query: 1046 KNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1219
            + +F NY + R +  L    +        LVP           ++ILF++N LVQ   LS
Sbjct: 237  RENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLS 296

Query: 1220 WPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 1384
             PAL  +F+RLL  K  +     +    LF L E  Y  P +      KK I   K +  
Sbjct: 297  GPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYE-PAHWLRDEYKKWI--SKGKLP 353

Query: 1385 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 1564
                  LDDGL+ ++RVQVTP +VY  GPEV+VSNRV+R +S+YI++F+RVSF+DED  +
Sbjct: 354  LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 413

Query: 1565 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1744
            + + DL  +  +  ++ TKLY RI S            FEFLAFSSSQLRE+S WMFA  
Sbjct: 414  VRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 471

Query: 1745 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1924
            +++TA  IRAWMG+F  IRNVAK AAR+GQ FSSS++TL V   E+E   D+ I      
Sbjct: 472  DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 531

Query: 1925 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 2101
            YVFSDGIGKIS   A ++A  CG  ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM 
Sbjct: 532  YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 591

Query: 2102 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDM 2281
            KF+SEN  +DVL+W+K++PC++NRQ+ITLLSTLGV D  FE  Q+E ++RLD IL H   
Sbjct: 592  KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 651

Query: 2282 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 2461
            A E L +M+ GEN N++  ++ CGY P  EP+LSM+L  FRA+KLLEL+ K RIF+  GR
Sbjct: 652  AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 711

Query: 2462 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGD 2641
             +MGCLDE R LEYG++ VQ ++P               R+ IITG V+VAKNPCLH GD
Sbjct: 712  SMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHSGD 760

Query: 2642 VRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPM 2821
            VR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ L+PP    PM
Sbjct: 761  VRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPM 820

Query: 2822 DYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
            DY   P   L+  VTIE+++E+FANY++NDS+GII+
Sbjct: 821  DYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIA 856


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  706 bits (1823), Expect = 0.0
 Identities = 408/882 (46%), Positives = 552/882 (62%), Gaps = 21/882 (2%)
 Frame = +2

Query: 347  RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQ---LDRSF 517
            +T++++  P    A  +   LEG    +G VY+ KI + T      ++AIVQ   ++ + 
Sbjct: 3    KTIQLSGFPSHVSAESVKEFLEGHTG-RGTVYAIKI-RPTKNGGSRSYAIVQFMTVETAE 60

Query: 518  LARKLCTTLP--ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCD 691
            L  +L         + + A V+ RD+V KPR +   +    LHFGCQ+S  +++ LW   
Sbjct: 61   LIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRV- 119

Query: 692  SDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKI 871
             +V  +F   +++L   LT   + YRL L + NV  +  +        YL+IQ+  AP++
Sbjct: 120  GNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRV 179

Query: 872  YYKEP--SSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 1045
            Y KE   S D+ +   +  +FK   D+QW+R TDFT +  IG+S+++ LEL  G     +
Sbjct: 180  YEKEVRISFDILENP-LFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDL 238

Query: 1046 KNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWP 1225
            + +F  YK+  E   L           LVP           ++ +F++N L+Q G LS P
Sbjct: 239  RENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGP 298

Query: 1226 ALGREFFRLLEPKSEEYVGRI------LFALQEISYSGPTYTPEKSLKKIIYDKKARRYA 1387
             L  +F+RL++P+    V  I      LF L+E  Y    +  E+  K +   +  +  A
Sbjct: 299  TLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPA 358

Query: 1388 DFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQL 1567
                 LD GL+ V RVQVTP+KVY  GPE++VSNRV+R++ +YID F+RVSF+DE+  +L
Sbjct: 359  ---IALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKL 415

Query: 1568 FATDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1744
            F+TDL  +  N  E + T +Y RILS            FEFLAFSSSQLR++SLWMFA+ 
Sbjct: 416  FSTDLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAV 475

Query: 1745 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1924
            +  +A+TIR W+G+F SIRNVAK AAR+GQ F SS +TL V ESE E  +DI IER +  
Sbjct: 476  DGHSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVK 535

Query: 1925 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 2101
            YVFSDGIGKIS   A+ +A  CG  D VPSAFQIRY GYKGVVA+DPTSS KLSLR SM 
Sbjct: 536  YVFSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMW 595

Query: 2102 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDM 2281
            K++SE   +DVL+++K + C+LNRQ+ITLLSTLGV D  FE  Q+E + +L+ IL+    
Sbjct: 596  KYESELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLR 655

Query: 2282 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 2461
            A E L +MS GE  N++  +L CGY P  EP+LSM+L AFRA+KL EL+ K RI +P GR
Sbjct: 656  AREALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGR 715

Query: 2462 CLMGCLDEYRILEYGEIFVQVT----EP--RSSLHFGTTGNQTSIRKRIITGTVIVAKNP 2623
             +MGCLDE R LEYGE+FVQ +     P    S   G TG   S +  I+ G V+VAKNP
Sbjct: 716  AMMGCLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTG---SGQNYIVVGRVVVAKNP 772

Query: 2624 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 2803
            CLHPGDVR+LRAV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ LIP 
Sbjct: 773  CLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQ 832

Query: 2804 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
                PMDY+  P   L+  V IE++QE+F NY++NDS+GII+
Sbjct: 833  KQFEPMDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIA 874


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  706 bits (1822), Expect = 0.0
 Identities = 386/803 (48%), Positives = 520/803 (64%), Gaps = 10/803 (1%)
 Frame = +2

Query: 551  STLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKK 730
            S+ ++A  +  D+V   R    H+    L+FGCQ+S +++AVL +  ++V  +F   +KK
Sbjct: 73   SSYLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKK 129

Query: 731  LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGL 910
             F  L+     Y+L LS+ N+  +  +        +L+IQ++ AP+IY +  +S      
Sbjct: 130  FFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS------ 183

Query: 911  WIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLS 1090
                FFK   D+QW+RTTDF  ++ IG S+S+CL+   G      + SF++Y +   N++
Sbjct: 184  -CYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNIT 241

Query: 1091 LHINXXXXXXXR--LVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPK 1264
            L          +  LVP+          YKILF++++LVQ G +  PAL   FFRL++P+
Sbjct: 242  LQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRLVDPQ 301

Query: 1265 SEEYVGRILFALQEISYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRV 1435
                V  I  AL+++ Y     Y P + L +    Y K  +     +  LDDGL+ V RV
Sbjct: 302  RRN-VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRV 360

Query: 1436 QVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKY 1615
             VTP KVY  GPEV+VSNRV+R +SE ID+F+RVSF+DE+  +L++TDL  K   G    
Sbjct: 361  LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR 420

Query: 1616 TKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLS 1795
            T +Y+RILS            FEFLAFSSSQLR++S+WMFAS   +TA  IR WMG+F  
Sbjct: 421  TNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQ 480

Query: 1796 IRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEE 1975
            I+NVAK AAR+GQ F SSK+TL V   E+E   D+ +     SYVFSDGIGKIS   A  
Sbjct: 481  IKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKVH--GTSYVFSDGIGKISADFARR 538

Query: 1976 LAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFR 2155
            +A  CG  Y PSAFQIRYGGYKGVVA+DP SS KLSLR SM K++S+N  +DVL W+K++
Sbjct: 539  VASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQ 598

Query: 2156 PCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVII 2335
            PCFLNRQ++TLLSTLGV+D+  E  Q+E +++LD IL     A E L++MS GEN N++ 
Sbjct: 599  PCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILK 658

Query: 2336 NMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIF 2515
             ML CGY P  EP+LSM+L  FRA+KLL+L+ ++RIF+P GR +MGCLDE R LEYG++F
Sbjct: 659  AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVF 718

Query: 2516 VQVT-----EPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLH 2680
            VQ T     E    LH       T+    I+ G V+VAKNPCLHPGD+R+LRAVD P LH
Sbjct: 719  VQFTGSGHREFSEDLHPFNNSRSTNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 777

Query: 2681 HLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRP 2860
            H+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD+ +IPP     M+Y   P I L+  
Sbjct: 778  HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHD 837

Query: 2861 VTIEDIQEFFANYMLNDSIGIIS 2929
            VTIE+++E+F NY++NDS+GII+
Sbjct: 838  VTIEEVEEYFTNYIVNDSLGIIA 860


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  705 bits (1819), Expect = 0.0
 Identities = 406/875 (46%), Positives = 546/875 (62%), Gaps = 14/875 (1%)
 Frame = +2

Query: 347  RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 520
            +T+++   P G  A ++   LE  L   G VY+ K+   K+  PR     AIVQ      
Sbjct: 3    KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VFAIVQFTNERY 58

Query: 521  ARKLCTTLPASTL------MQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 682
            AR++ T      L      + A  + +D+V KPR S  +I+  +++FGCQVS  ++  LW
Sbjct: 59   ARQIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLW 118

Query: 683  TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 862
            +   DV   F   ++KL    +     YRL LS+ N+  +  +S       +LVIQV  A
Sbjct: 119  SAQ-DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGA 177

Query: 863  PKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 1042
            PKI+ KE    +     + +F+  GSD QWIRTTDFT +  IG ST+ CLEL        
Sbjct: 178  PKIFEKE-DQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 236

Query: 1043 IKNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGIL 1216
             + +F NY + R +  L    +       +LVP           ++ILF++N LVQ   L
Sbjct: 237  FRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACL 296

Query: 1217 SWPALGREFFRLLEPKSEEYVGRILFALQEISYSGPT-YTPEKSLKKIIYD--KKARRYA 1387
              PAL  + ++LL PK       I   L+++ + G + Y P + L+K   +   K +   
Sbjct: 297  PGPALDLDVYQLLNPKKYNRA-LIDHCLEKLFHLGESCYEPARWLRKQYKELSSKGKLPL 355

Query: 1388 DFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQL 1567
                 LDDGL+ ++RVQVTP +VY  GPEV+VSNRV+R +S+YI++F+RVSF+DED  ++
Sbjct: 356  SPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKV 415

Query: 1568 FATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNE 1747
             + DL  +  +  ++ TKLY RI S            FEFLAFSSSQLRE+S WMFA  +
Sbjct: 416  RSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPID 473

Query: 1748 QVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSY 1927
             +T+  IRAWMG+F  IRNVAK AAR+GQ FSSS++TL V   E+E   D+ I      Y
Sbjct: 474  GLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRY 533

Query: 1928 VFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRK 2104
            VFSDGIGKIS   A  +A  CG  ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM K
Sbjct: 534  VFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSK 593

Query: 2105 FDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMA 2284
            F+SEN  +DVL+W+K++PC++NRQ+ITLLSTLGV+D  F+  Q+E ++RLD IL     A
Sbjct: 594  FESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTDPLEA 653

Query: 2285 LEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRC 2464
             E L +M+ GEN N++  ++ CGY P  EP+LSM+L  FRA+KLLEL+ K RIF+  GR 
Sbjct: 654  HEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRS 713

Query: 2465 LMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDV 2644
            +MGCLDE R LEYG++ VQ ++P               R+ IITG V+VAKNPCLHPGDV
Sbjct: 714  MMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHPGDV 762

Query: 2645 RILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMD 2824
            R+L AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ LIPP    PMD
Sbjct: 763  RVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMD 822

Query: 2825 YAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
            Y   P   L+  VTIE+++E+FANY++NDS+GII+
Sbjct: 823  YTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIA 857


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  704 bits (1818), Expect = 0.0
 Identities = 381/781 (48%), Positives = 511/781 (65%), Gaps = 10/781 (1%)
 Frame = +2

Query: 617  HIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVR 796
            H+    L+FGCQ+S +++AVL +  ++V  +F   +KK++  L+     Y+L LS+ N+ 
Sbjct: 93   HMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIW 150

Query: 797  YMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTR 976
             +  +        +L+IQ++ AP+IY +  +S          FFK   D+QW+RTTDF  
Sbjct: 151  QVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS-------CYSFFKETPDDQWVRTTDFAP 203

Query: 977  NFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXXR--LVPSXXXX 1150
            ++ IG S+S+CL+   G      + SF++Y +   N++L          +  LVP+    
Sbjct: 204  SW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPP 262

Query: 1151 XXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEISYSGPT- 1327
                  YKILF++++LVQ G +  P+L   FFRL++P+    V  I  AL+++ Y     
Sbjct: 263  EGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRN-VACIEQALEKLYYLKECC 321

Query: 1328 YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIR 1501
            Y P + L +    Y K  +     +  LDDGL+ V RV VTP KVY  GPEV+VSNRV+R
Sbjct: 322  YDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 381

Query: 1502 QFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXF 1681
             +SE ID+F+RVSF+DE+  +L++T+L  K   G    T +Y RILS            F
Sbjct: 382  NYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTMQKGFVIGDKKF 441

Query: 1682 EFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTL 1861
            EFLAFSSSQLR++S+WMFAS   +TA  IR WMG+F  I+NVAK AAR+GQ F SSK+TL
Sbjct: 442  EFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETL 501

Query: 1862 CVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYK 2041
             V   E+E   D+ +     SYVFSDGIGKIS   A  +A  CG  Y PSAFQIRYGGYK
Sbjct: 502  SVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYK 559

Query: 2042 GVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERF 2221
            GVVA+DP SS KLSLR SM K++S+N  +DVL W+K++PC+LNRQ+ITLLSTLGV+D+  
Sbjct: 560  GVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLGVKDDIL 619

Query: 2222 ENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAF 2401
            E  Q+E +++LD IL     A E L++MS GEN N++  ML CGY P  EP+LSM+L  F
Sbjct: 620  EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTF 679

Query: 2402 RAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIFVQVT-----EPRSSLHFGTTGN 2566
            RA+KLL+L+ K+RIF+P GR +MGCLDE R LEYG++FVQ T     E    LH      
Sbjct: 680  RASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSR 739

Query: 2567 QTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSG 2746
             T+    I+ G V+VAKNPCLHPGD+R+LRAVD P LHH+VDCVVFPQKGKRPHPNECSG
Sbjct: 740  STNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 798

Query: 2747 SDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGII 2926
            SDLDGD+YFVCWD+ +IPP    PM+Y   P I L+  VTIE+++E+F NY++NDS+GII
Sbjct: 799  SDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGII 858

Query: 2927 S 2929
            S
Sbjct: 859  S 859


>gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 935

 Score =  702 bits (1813), Expect = 0.0
 Identities = 378/781 (48%), Positives = 511/781 (65%), Gaps = 10/781 (1%)
 Frame = +2

Query: 617  HIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVR 796
            H+    L+FGCQ+S +++AVL +  ++V  +F   +K  F  L+     Y+L LS+ N+ 
Sbjct: 94   HMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKNFFFFLSSGSADYKLQLSYENIW 151

Query: 797  YMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTR 976
             +  +        +L+IQ++ AP+IY +  +S          FFK   D+QW+RTTDFT 
Sbjct: 152  QVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS-------CYSFFKETPDDQWVRTTDFTP 204

Query: 977  NFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXXR--LVPSXXXX 1150
            ++ IG S+S+CL+   G      + SF++Y +   N++L          +  LVP+    
Sbjct: 205  SW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPP 263

Query: 1151 XXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEISYSGPT- 1327
                  YKILF++++LVQ G +  PAL   FFRL++P+    V  I  AL+++ Y     
Sbjct: 264  EGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRN-VACIEQALEKLYYLKECC 322

Query: 1328 YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIR 1501
            Y P + L +    Y K  +     +  LDDGL+ V RV VTP KVY  GPEV+VSNRV+R
Sbjct: 323  YDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382

Query: 1502 QFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXF 1681
             +SE ID+F+RVSF+DE+  +L++T+L  K   G    T +Y RILS            F
Sbjct: 383  NYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKF 442

Query: 1682 EFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTL 1861
            EFLAFSSSQLR++S+WMFAS   +TA  IR+WMG+F  I+NVAK AAR GQ F SS++TL
Sbjct: 443  EFLAFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETL 502

Query: 1862 CVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYK 2041
             V   E+E   D+ +     SYVFSDGIGKIS   A ++A +CG  Y PSAFQIRYGGYK
Sbjct: 503  SVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARKVASNCGLQYTPSAFQIRYGGYK 560

Query: 2042 GVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERF 2221
            GVVA+DP SS KLSLR SM K++S+N  +DVL W+K++PC+LNRQ++TLLSTLGV+D+  
Sbjct: 561  GVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVL 620

Query: 2222 ENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAF 2401
            E  Q+E +++LD IL     A E L++MS GEN N++  ML CGY P  EP+LSM+L  F
Sbjct: 621  EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTF 680

Query: 2402 RAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIFVQVT-----EPRSSLHFGTTGN 2566
            RA+KLL+L+ K+RIF+P GR +MGCLDE R LEYG++FVQ T     E    LH      
Sbjct: 681  RASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSR 740

Query: 2567 QTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSG 2746
             T+    I+ G V+VAKNPCLHPGD+R+LRAVD P LHH+VDCVVFPQKGKRPHPNECSG
Sbjct: 741  STNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 799

Query: 2747 SDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGII 2926
            SDLDGD+YFVCWD+ +IPP     M++  PP I L+  VTIE+++E+F NY++ND +GII
Sbjct: 800  SDLDGDIYFVCWDQDMIPPRQVQAMEFPPPPSIQLDHDVTIEEVEEYFTNYIVNDGLGII 859

Query: 2927 S 2929
            +
Sbjct: 860  A 860


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  702 bits (1812), Expect = 0.0
 Identities = 383/803 (47%), Positives = 520/803 (64%), Gaps = 10/803 (1%)
 Frame = +2

Query: 551  STLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKK 730
            S+ ++A  +  D+V   R    H+    L+FGCQ+S +++AVL +  ++V  +F   +KK
Sbjct: 73   SSYLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISEDKFAVLGS--TEVSIKFGIGLKK 129

Query: 731  LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGL 910
             F  L+     Y+L LS+ N+  +  +        +L+IQ++ AP+IY +  +S      
Sbjct: 130  FFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS------ 183

Query: 911  WIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLS 1090
                FFK   D+QW+RTTDFT ++ IG S+S+CL+   G      + SF++Y +   N++
Sbjct: 184  -CYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNIT 241

Query: 1091 LHINXXXXXXXR--LVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPK 1264
            L          +  LVP+          YKILF++++LVQ G +  PAL   FFRL++P+
Sbjct: 242  LQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQ 301

Query: 1265 SEEYVGRILFALQEISYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRV 1435
                V  I  AL+++ Y     Y P + L +    Y K  +     +  LDDGL+ V RV
Sbjct: 302  RRN-VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRV 360

Query: 1436 QVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKY 1615
             VTP KVY  GPEV+VSNRV+R +SE ID+F+RVSF+DE+  +L++T+L  K   G    
Sbjct: 361  LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR 420

Query: 1616 TKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLS 1795
            T +Y RILS            FEFLAFSSSQLR++S+WMFAS   +T   IR+WMG+F  
Sbjct: 421  TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQ 480

Query: 1796 IRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEE 1975
            I+NVAK AAR+GQ F SS++TL V   E+E   D+ +     SYVFSDGIGKIS   A  
Sbjct: 481  IKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARR 538

Query: 1976 LAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFR 2155
            +A  CG  Y PSAFQIRYGGYKGVVA+DP SS KLSLR SM K++S+N  +DVL W+K++
Sbjct: 539  VASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQ 598

Query: 2156 PCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVII 2335
            PC+LNRQ++TLLSTLGV+D+  E  Q+E +++LD IL     A E L++MS GEN N++ 
Sbjct: 599  PCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILK 658

Query: 2336 NMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIF 2515
             ML CGY P  EP+LSM+L  FRA+KLL+L+ ++RIF+P GR +MGCLDE R LEYG++F
Sbjct: 659  AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVF 718

Query: 2516 VQVT-----EPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLH 2680
            VQ T     E    LH       T+    I+ G V+VAKNPCLHPGD+R+LRAVD P LH
Sbjct: 719  VQFTGAGHREFSEDLHPFNNSRSTNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 777

Query: 2681 HLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRP 2860
            H+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD+ +IPP     M+Y   P I L+  
Sbjct: 778  HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHN 837

Query: 2861 VTIEDIQEFFANYMLNDSIGIIS 2929
            VTIE+++E+F NY++NDS+GII+
Sbjct: 838  VTIEEVEEYFTNYIVNDSLGIIA 860


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score =  702 bits (1811), Expect = 0.0
 Identities = 404/874 (46%), Positives = 537/874 (61%), Gaps = 13/874 (1%)
 Frame = +2

Query: 347  RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 526
            +T+++   P G  A  +   LE    E G V++ K+    +    YA  I+Q      A 
Sbjct: 3    KTIQLHGFPSGQTAENIKEFLEKHTGE-GSVFALKLRPAKSGGRFYA--IIQFQSISQAE 59

Query: 527  KLCTTLPASTLMQATVL----PRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDS 694
            K+ +   A      + L      D+V KPR     +    LH GCQV+ ++++VLW   +
Sbjct: 60   KIISLANARLWYGRSYLNARPAHDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWGT-A 118

Query: 695  DVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIY 874
            +V  +F   ++ L   L  R   YRL LS+ N+  +  +        YLVIQ+Y  P+IY
Sbjct: 119  EVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRIY 178

Query: 875  YKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNS 1054
             +E  S  G+G     +F+   D  W+RTTDFT    IG S+S+CL L    +    + +
Sbjct: 179  QQEVCSSGGNGYEDMNYFRDPDD--WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEEN 236

Query: 1055 FYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALG 1234
            F  YK       L           LVP           Y ILF++N LVQ+G LS P L 
Sbjct: 237  FAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTLD 296

Query: 1235 REFFRLLEPKSEEYVGR--ILFALQEIS-YSGPTYTP----EKSLKKIIYDKKARRYADF 1393
              F+RL++P+    + R  I FAL ++S      Y P     +  +K +  KK  + A  
Sbjct: 297  NNFYRLVDPRR---ISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALI 353

Query: 1394 NTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFA 1573
            +  LD GL+ V RVQ+TP+KVY  GPEV+VSNR++RQ+S  ID+F+RVSF+DE+  +L++
Sbjct: 354  S--LDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYS 411

Query: 1574 TDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQV 1753
            TDL    P    + T++Y R+LS            FEFLAFSSSQLRE+SLWMFA  ++ 
Sbjct: 412  TDLS---PRTSTRKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDED 468

Query: 1754 TAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVF 1933
            +A+TIRA MG+F  IRNVAK AAR+GQ F SS +TL V  +E+E   D+T+      YVF
Sbjct: 469  SADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVF 528

Query: 1934 SDGIGKISVALAEELAVHCGCD-YVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFD 2110
            SDGIGKIS   AE +A  CG   + PSAFQIRYGGYKGVVA+DPTSS KLSLR SM K++
Sbjct: 529  SDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYE 588

Query: 2111 SENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMALE 2290
            SEN  +DVL+ +K++PCFLNRQ+ITLLSTL V+D  F   Q+  + +L+ IL     A E
Sbjct: 589  SENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEE 648

Query: 2291 VLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLM 2470
             L +MS GE+ NV+  +L CGY P  EP+LSM+L  FRA+KLLEL+ K RIF+P GR +M
Sbjct: 649  ALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMM 708

Query: 2471 GCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRK-RIITGTVIVAKNPCLHPGDVR 2647
            GCLDE R LEYG++FVQ +  R    F      +S+    II G V+VAKNPCLHPGDVR
Sbjct: 709  GCLDETRTLEYGQVFVQFSGKRRRQLFDDICIHSSLDSCFIIEGKVVVAKNPCLHPGDVR 768

Query: 2648 ILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDY 2827
            +LRAV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD  LIPP    PMDY
Sbjct: 769  VLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDY 828

Query: 2828 AAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
               P I +++ VTIE+++E+F NY++NDS+GII+
Sbjct: 829  TPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIA 862


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  700 bits (1806), Expect = 0.0
 Identities = 378/775 (48%), Positives = 508/775 (65%), Gaps = 10/775 (1%)
 Frame = +2

Query: 635  LHFGCQVSHNRYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYS 814
            L+FGCQ+S +++AVL +  ++V  +F   +KK F  L+     Y+L LS+ N+  +  + 
Sbjct: 100  LNFGCQISDDKFAVLGS--TEVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHR 157

Query: 815  TDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGN 994
                   +L+IQ++ AP+IY +  +S          FFK   D+QW+RTTDF  ++ IG 
Sbjct: 158  PYGQNAQFLLIQLFGAPRIYKRLENS-------CYSFFKETPDDQWVRTTDFPPSW-IGL 209

Query: 995  STSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXXR--LVPSXXXXXXXXXX 1168
            S+S+CL+   G +    + SF++Y +   N++L          +  LVP+          
Sbjct: 210  SSSLCLQFRRGVRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIP 269

Query: 1169 YKILFQVNALVQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEISYSGPT-YTPEKS 1345
            YKILF++++LVQ G +  PAL   FFRL++P+    V  I  AL+++ Y     Y P + 
Sbjct: 270  YKILFKISSLVQHGCIPGPALNVYFFRLVDPRRRN-VACIEHALEKLYYIKECCYDPVRW 328

Query: 1346 LKKII--YDKKARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYI 1519
            L +    Y K  +     +  LDDGL+ V RV VTP KVY  GPEV+VSNRV+R +SE I
Sbjct: 329  LTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDI 388

Query: 1520 DDFIRVSFIDEDERQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFS 1699
            D+F+RVSF+DE+  +L++TDL  K   G    T +Y RILS            FEFLAFS
Sbjct: 389  DNFLRVSFVDEEWEKLYSTDLLPKASTGSGVRTNIYERILSTLRKGFVIGDKKFEFLAFS 448

Query: 1700 SSQLRESSLWMFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESE 1879
            SSQLR++S+WMFAS   +TA  IRAWMG+F  I+NVAK AAR+GQ F SS++TL V   E
Sbjct: 449  SSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHE 508

Query: 1880 VEDCNDITIERDSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMD 2059
            +E   D+ +     SYVFSDGIGKIS   A  +A  CG  Y PSAFQIRYGGYKGVV +D
Sbjct: 509  IEVIPDVKVH--GTSYVFSDGIGKISGDFAHRVASKCGLQYTPSAFQIRYGGYKGVVGVD 566

Query: 2060 PTSSYKLSLRPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQE 2239
            P SS KLSLR SM K++S+N  +DVL W+K++PC+LNRQ+ITLLSTLGV+DE  E  Q+E
Sbjct: 567  PDSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKE 626

Query: 2240 DINRLDLILDHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLL 2419
             +++LD IL     A E L++MS GEN N++  ML CGY P  EP+LSM+L  FRA+KLL
Sbjct: 627  AVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLL 686

Query: 2420 ELKHKARIFVPKGRCLMGCLDEYRILEYGEIFVQVT-----EPRSSLHFGTTGNQTSIRK 2584
            +L+ ++RIF+P GR +MGCLDE R LEYG++FVQ T     E    LH       T+   
Sbjct: 687  DLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTN-SN 745

Query: 2585 RIITGTVIVAKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGD 2764
             I+ G V+VAKNPCLHPGD+R+L+AV+   LHH+VDCVVFPQKGKRPHPNECSGSDLDGD
Sbjct: 746  FILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGD 805

Query: 2765 LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929
            +YFVCWD+ +IPP    PM+Y   P I L+  VTIE+++E+F NY++NDS+GII+
Sbjct: 806  IYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIA 860


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score =  699 bits (1804), Expect = 0.0
 Identities = 384/803 (47%), Positives = 518/803 (64%), Gaps = 10/803 (1%)
 Frame = +2

Query: 551  STLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKK 730
            S+ ++A  +  D+V    E   H+    L+FGCQ+S +++AVL +  ++V  +F   +KK
Sbjct: 73   SSYLKAREMETDLVQL-WEYVDHMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKK 129

Query: 731  LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGL 910
             F  L+     Y+L LS+ N+  +  +        +L+IQ++ AP+IY +  +S      
Sbjct: 130  FFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS------ 183

Query: 911  WIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLS 1090
                FFK   D+QW+RTTDF  ++ IG S+S+CL+   G      + SF++Y +   N++
Sbjct: 184  -CYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNIT 241

Query: 1091 LHINXXXXXXXR--LVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPK 1264
            L          +  LVP+          YKILF++++LVQ G +  PAL   FFRL++P+
Sbjct: 242  LQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQ 301

Query: 1265 SEEYVGRILFALQEISYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRV 1435
                V  I  AL+++ Y     Y P + L +    Y K  +     +  LDDGL+ V RV
Sbjct: 302  RRN-VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRV 360

Query: 1436 QVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKY 1615
             VTP KVY  GPEV+VSNRV+R +SE ID+F+RVSF+DE+  +L++TDL  K   G    
Sbjct: 361  LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR 420

Query: 1616 TKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLS 1795
            T +Y RILS            FEFLAFSSSQLR++S+WMFAS   +TA  IR WMG+F  
Sbjct: 421  TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQ 480

Query: 1796 IRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEE 1975
            I+NVAK AAR+GQ F SS +TL V   E+E   D+ +     SYVFSDGIGKIS   A  
Sbjct: 481  IKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARR 538

Query: 1976 LAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFR 2155
            +A  CG  + PSAFQIRYGGYKGVVA+DP SS KLSLR SM K++S+N  +DVL W+K++
Sbjct: 539  VASKCGLQHTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQ 598

Query: 2156 PCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVII 2335
            PC+LNRQ++TLLSTLGV+D+  E  Q+E +++LD IL     A E L++MS GEN N++ 
Sbjct: 599  PCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILK 658

Query: 2336 NMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIF 2515
             ML CGY P  EP+LSM+L  FRA+KLL+L+ K+RIF+P GR +MGCLDE R LEYG++F
Sbjct: 659  AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEYGQVF 718

Query: 2516 VQVT-----EPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLH 2680
            VQ T     E    LH       T+    I+ G V+VAKNPCLHPGD+R+LRAVD P LH
Sbjct: 719  VQFTGSGHREFSEDLHPFNNSRSTNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 777

Query: 2681 HLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRP 2860
            H+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD+ +IPP     M+Y   P I L+  
Sbjct: 778  HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHD 837

Query: 2861 VTIEDIQEFFANYMLNDSIGIIS 2929
            VTIE+++E+F NY++NDS+GII+
Sbjct: 838  VTIEEVEEYFTNYIVNDSLGIIA 860