BLASTX nr result
ID: Ephedra27_contig00018763
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra27_contig00018763 (2937 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 739 0.0 ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 723 0.0 ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 717 0.0 ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 716 0.0 gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro... 713 0.0 ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 711 0.0 ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha... 711 0.0 ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 711 0.0 ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 710 0.0 ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 708 0.0 gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali... 707 0.0 gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 706 0.0 ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 706 0.0 emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall... 705 0.0 gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu... 704 0.0 gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tu... 702 0.0 gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 702 0.0 ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 702 0.0 ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 700 0.0 ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 699 0.0 >ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda] gi|548853371|gb|ERN11375.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda] Length = 1210 Score = 739 bits (1907), Expect = 0.0 Identities = 419/879 (47%), Positives = 557/879 (63%), Gaps = 18/879 (2%) Frame = +2 Query: 347 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 526 RTV+++ P GT A + LE I G VY KI + + AIVQ S A Sbjct: 76 RTVQVSGFPQGTCAEAVKKFLESITGF-GTVYHLKIRIHKSKPNSRVFAIVQFTTSKSAE 134 Query: 527 KLCTTLP-------ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 685 + + P ++ + + D+V PR + + + +L+FG Q+S +A+LW+ Sbjct: 135 VIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILWS 194 Query: 686 CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAP 865 +++V+ EF +KK+F L G+ Y+L L + N+ + + YLV+Q+ AP Sbjct: 195 -NTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAP 253 Query: 866 KIYYKEPS--SDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDA 1039 +I+ K S SD+ D + ++K D QW+R+ DFT + SIG S+S+CL L +G + Sbjct: 254 RIFQKPLSFSSDIYDSP-LFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIP 312 Query: 1040 VIKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1219 I+ +F YK+I +L LVP YKILF+VN+LVQ G L Sbjct: 313 NIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLV 372 Query: 1220 WPALGREFFRLLEPKSEEYVGRILFALQEISYS--GPTYTPEKSLKKIIYDKKARRYADF 1393 P L EF+ LL +V R L + ++ P ++ KK Y RR + Sbjct: 373 GPTLDTEFYNLLNGLPSPFVERSLEDISRLTNCCLEPAKWLQEQYKK--YRNLPRRPSPA 430 Query: 1394 NTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFA 1573 L+ GL+ VHRVQVTP+KVY +GPEV+VSNRV+RQFS YID+F+R+SFIDED + + Sbjct: 431 AISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSIRS 490 Query: 1574 TDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQ 1750 TDL ++M +G E+K+T +Y R+LS FEFLAFSSSQLR++S WMF+ + Sbjct: 491 TDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAWMFSPIDG 550 Query: 1751 VTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYV 1930 +TA IR WMG+F IRNVAKCAARMGQ F SS +TL V EVE +DI + YV Sbjct: 551 ITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDIK----NGKYV 606 Query: 1931 FSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKF 2107 FSDGIGKIS+ A+++A+ CGC + PSAFQIRYGGYKGVVA+DPTS YKLSLR SMRK+ Sbjct: 607 FSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSMRKY 666 Query: 2108 DSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMAL 2287 S N +DVL+++KF+PCFLNRQ+ITLLSTLGV+D FE Q++ +++LD IL + A Sbjct: 667 SSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPESAF 726 Query: 2288 EVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCL 2467 E L++MS GEN NV+ ML CGY P EP+LSM+L FR KL ELK K RIF+P GR + Sbjct: 727 EALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNGRSM 786 Query: 2468 MGCLDEYRILEYGEIFVQVTE--PRSSLHFGTT---GNQTSIRKRIITGTVIVAKNPCLH 2632 MGCLDE ILEYG++FVQ + R FG + + + R R++ G VIVAKNPCLH Sbjct: 787 MGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNPCLH 846 Query: 2633 PGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVD 2812 PGDVRIL A+D P LHH+V+CVVFPQKGKRPHPNECSGSDLDGD+YFV WD LIP Sbjct: 847 PGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIPCHQG 906 Query: 2813 MPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 PM+Y P L+ VTIE+I+E+F NYM+NDS+GII+ Sbjct: 907 TPMEYEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIA 945 >ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine max] gi|571439308|ref|XP_006574822.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Glycine max] gi|571439310|ref|XP_006574823.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X3 [Glycine max] Length = 1125 Score = 723 bits (1867), Expect = 0.0 Identities = 410/879 (46%), Positives = 555/879 (63%), Gaps = 18/879 (2%) Frame = +2 Query: 347 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDR----- 511 +T+++ P + + + T +E E G V++ K L+ R A AI+Q Sbjct: 3 KTIELYGFPTSVNVSDVKTFVEQYTGE-GTVFAIK-LRHGKGRVPRAFAIIQFTTANSAT 60 Query: 512 SFLARK---LCTTLPASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 682 S ++R L T ++ ++A + RD+V +PR + +L FGCQ+S R++VLW Sbjct: 61 SMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLW 120 Query: 683 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 862 DV F S ++K+ + + Y+L LS+ N+ + + + YL+IQ+ A Sbjct: 121 K-KQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGA 179 Query: 863 PKIYYKE-PSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDA 1039 P+++ + P+S + FFK D QWIR DFT IG S++ICLEL +G + Sbjct: 180 PRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLP 239 Query: 1040 VIKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1219 + +F Y++ +L LVP Y ILF+VN+LVQ L+ Sbjct: 240 NFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLA 299 Query: 1220 WPALGREFFRLLEPKS--EEYVGRILFALQEISYSGP-TYTPEKSL----KKIIYDKKAR 1378 PAL +F+RL++P+ E++ +AL++I YS Y P K L K + K Sbjct: 300 GPALDGDFYRLVDPRRMPREFIE---YALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHP 356 Query: 1379 RYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDE 1558 R + LD GL+ V RVQ+TP KVY GPE++VSNRV+R F E+ID+F+RVSF+DE+ Sbjct: 357 RSPAIS--LDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEEL 414 Query: 1559 RQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFA 1738 +LF+TDL + N K T++Y RILS FEFLAFSSSQLRE+SLWMFA Sbjct: 415 DKLFSTDLSSRSQN---KKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFA 471 Query: 1739 SNEQ-VTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDIT-IER 1912 E TA IR WMGNF IRNVAK AAR+GQ F SS +TL V+ EVE D+ + Sbjct: 472 PTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTY 531 Query: 1913 DSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRP 2092 D + YVFSDGIGKIS+ A+++A CG D PSAFQIRYGGYKGVVA+DP S YKLSLR Sbjct: 532 DGNEYVFSDGIGKISLEFAQKVAKKCGYDCTPSAFQIRYGGYKGVVAVDPKSCYKLSLRK 591 Query: 2093 SMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDH 2272 SMRK+DS+N +DVL+ +KF+PC+LNRQ+I+LLSTLG++D+ FE Q+E +N+L+ IL Sbjct: 592 SMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTD 651 Query: 2273 KDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVP 2452 A EVL +MS GE NV+ ML CGY P +EP+LSM+L FRA+KLLEL+ K+RIF+P Sbjct: 652 SLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIP 711 Query: 2453 KGRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLH 2632 KGR +MGCLDE R LEYG++FVQ + R + + ++ G V+VAKNPCLH Sbjct: 712 KGRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNYMVKGKVVVAKNPCLH 771 Query: 2633 PGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVD 2812 PGDVR+L+AVD P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD LIP Sbjct: 772 PGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSRPI 831 Query: 2813 MPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 PMDY AP + L+ V IE+++E+FANY++NDS+GII+ Sbjct: 832 DPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIA 870 >ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus] gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase 1a [Cucumis sativus] Length = 1130 Score = 717 bits (1852), Expect = 0.0 Identities = 412/882 (46%), Positives = 543/882 (61%), Gaps = 21/882 (2%) Frame = +2 Query: 347 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 520 +T+ I+ P A+ + LEG G VY+ K+ K+ R +AIVQ + Sbjct: 3 KTIHISGFPSHVTADAVKNFLEGHTGP-GTVYAIKVRPPKRGGGR---LYAIVQFTSATQ 58 Query: 521 ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 685 A + + S+ ++A D+V KPR + L FGCQVS ++ VLW Sbjct: 59 AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118 Query: 686 CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAP 865 + D+ F ++K+ L + + YRL LS+ + + + YL+IQ+ AP Sbjct: 119 GNVDL-VTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAP 177 Query: 866 KIYYK-EPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 1042 +IY K P+S + FFK SD+QW+RTTDFT + SIG S+S+CL+L +G + Sbjct: 178 RIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPP 237 Query: 1043 IKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSW 1222 K +F Y++ L R + YKILF++NALVQ G + W Sbjct: 238 FKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPW 297 Query: 1223 PALGREFFRLLEP------KSEEYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 1384 P L F+RL+E + E+ LF L+E +Y + E+ Y K +R Sbjct: 298 PLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQ------YRKYSRHP 351 Query: 1385 ADFNTY-LDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 1561 + LDDGL+ V RVQ+TP KV+ GPEV+VSNRV+R FS+YID+F+RVSF+DE+ Sbjct: 352 PNSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWD 411 Query: 1562 QLFATDLCQKMPN-GEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFA 1738 ++ +TDL +M + E T +Y RILS F+FLAFSSSQLR++SLWMFA Sbjct: 412 KMRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFA 471 Query: 1739 SNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDS 1918 S + A IRAWMG+F I+N AK AAR+GQ F SS + L V +E E DI +++ Sbjct: 472 SGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGE 531 Query: 1919 DSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 2098 YVFSDGIGKIS A+E+A CG VPSAFQIRYGGYKGVVA+DP S+ KLSLR SM Sbjct: 532 IKYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSM 591 Query: 2099 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKD 2278 KF+S+N +DVL +K++PCFLNRQ+ITL+STLGVRDE FE Q E + +LD IL Sbjct: 592 CKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPL 651 Query: 2279 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKG 2458 A E L++MS GEN N++ ML+CGY P EPYLSM+L FRA+KLLEL+ K+RIF+P G Sbjct: 652 KAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNG 711 Query: 2459 RCLMGCLDEYRILEYGEIFVQVTEPR-----SSLHFGTTGNQTSIRKRIITGTVIVAKNP 2623 R +MGCLDE R LEYG++FVQ++ R S F G + + +I G V VAKNP Sbjct: 712 RAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHL---VIEGNVTVAKNP 768 Query: 2624 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 2803 CLHPGDVR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD LIP Sbjct: 769 CLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPS 828 Query: 2804 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 PMDY P L+R VT EDIQE+F NYM+NDS+GII+ Sbjct: 829 RQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIA 870 >ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella] gi|482575337|gb|EOA39524.1| hypothetical protein CARUB_v10008144mg [Capsella rubella] Length = 1107 Score = 716 bits (1847), Expect = 0.0 Identities = 415/878 (47%), Positives = 549/878 (62%), Gaps = 17/878 (1%) Frame = +2 Query: 347 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 520 +T+++ P+G + + + LE L G VY+ K+ K+ PR AIVQ Sbjct: 3 KTIQVFGFPVGVNTDDVKIFLER-LTGSGTVYAIKVRQPKRGGPR---VFAIVQFTSERH 58 Query: 521 ARKLCTTLPASTL------MQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 682 AR L T+ A L ++A + +D+V KPR S I+ +++FGCQVS + LW Sbjct: 59 AR-LIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLW 117 Query: 683 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 862 + + V F + ++KL ++ YRL LS+ N+ + +S +LVIQV A Sbjct: 118 SAHN-VCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGA 176 Query: 863 PKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 1042 PKI+ KE + + +F+ GSD QWIRTTDFT + IG ST+ CLEL Sbjct: 177 PKIFEKE-DQPVNFLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVPD 235 Query: 1043 IKNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGIL 1216 + +F NY + R + L + +LVP ++ILF+VN LVQ L Sbjct: 236 FRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNACL 295 Query: 1217 SWPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARR 1381 PAL EF++LL PK + + LF L E Y + E+ KK+ KK Sbjct: 296 PGPALDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREE-YKKLNSSKKLPL 354 Query: 1382 YADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 1561 + LDDGL+ ++RV VTP +VY GPEV+VSNRV+R +SEYI++F+R+SF+DED Sbjct: 355 SPTIS--LDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLE 412 Query: 1562 QLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFAS 1741 ++ + DL + + ++ TKLY RI S FEFLAFSSSQLRE+S WMFA Sbjct: 413 KIHSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 470 Query: 1742 NEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSD 1921 +++TA IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ Sbjct: 471 RDRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDT 530 Query: 1922 SYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 2098 YVFSDGIGKIS A ++A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM Sbjct: 531 RYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 590 Query: 2099 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKD 2278 KF+S N +DVL+W+K++PC+LNRQIITLLSTLGV+D FE Q+E ++RLD IL Sbjct: 591 SKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDPL 650 Query: 2279 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKG 2458 A E L +M+ GEN N++ +L CGY P EP+LSM+L FRA+KLLEL+ K RIF+P G Sbjct: 651 EAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPGG 710 Query: 2459 RCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKR-IITGTVIVAKNPCLHP 2635 R +MGCLDE R LEYG++ VQ + P T KR IITG V+VAKNPCLHP Sbjct: 711 RSMMGCLDETRTLEYGQVVVQYSNP------------TMPGKRYIITGPVVVAKNPCLHP 758 Query: 2636 GDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDM 2815 GDVR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YF+CWD LIPP Sbjct: 759 GDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIPPRTSE 818 Query: 2816 PMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 PMDY P L+ VTIE+++E+FANY++NDS+GII+ Sbjct: 819 PMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIA 856 >gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] Length = 1109 Score = 713 bits (1840), Expect = 0.0 Identities = 406/873 (46%), Positives = 546/873 (62%), Gaps = 12/873 (1%) Frame = +2 Query: 347 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 526 +T++++ P A ++ T LE + K VY+ KI +Q N YA IVQ +S A Sbjct: 3 KTIQVSRFPSNVHAEEVKTFLE-LYTGKETVYALKIRQQKNGGRAYA--IVQFTKSTDAE 59 Query: 527 KLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCD 691 + S+ ++A + D+V KPR + LHFGCQVS+ ++ VLW + Sbjct: 60 LIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE-E 118 Query: 692 SDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKI 871 DV F ++KL L+ + YRL L + N+ + + + YL+IQ++ AP+I Sbjct: 119 VDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRI 178 Query: 872 YYKEP-SSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIK 1048 Y K+ SS + + +F D+QW+RTTDFT++ IG S+ +CLEL + + Sbjct: 179 YEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFR 238 Query: 1049 NSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPA 1228 +F YK+ L LVP Y+ILF++N LVQ G + PA Sbjct: 239 ENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPA 298 Query: 1229 LGREFFRLLEPKSEEYVGRILFALQEISYSGPT-YTPEKSL----KKIIYDKKARRYADF 1393 L F+RL+ P + V I AL+++ Y + P K L K I KK Sbjct: 299 LDANFYRLVNPCRIDKV-YIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVI 357 Query: 1394 NTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFA 1573 + LDDGL+ V RVQ+TP++VY GPE++VSNRV+R F + ID+F+R++F+DE+ ++ + Sbjct: 358 S--LDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHS 415 Query: 1574 TDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQV 1753 TDL + + T++Y RILS FEFLAFSSSQLRE+S WMFAS E + Sbjct: 416 TDLLTR-----NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGL 470 Query: 1754 TAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVF 1933 TA IR WMG F IRNVAK AAR+GQ FSSS +TL V + E+E +D+ I+RD +YVF Sbjct: 471 TAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVF 530 Query: 1934 SDGIGKISVALAEELAVHCGCD-YVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFD 2110 SDGIGKIS A+++A C + PSAFQIR GG+KGVVA+DPTSS KLSLR SM K++ Sbjct: 531 SDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYE 590 Query: 2111 SENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMALE 2290 SEN +DVL+W+K++PCFLNRQ+ITLLSTLGV D FE Q+E +++L+ IL A E Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQE 650 Query: 2291 VLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLM 2470 L++MS GEN N++ ML CGY P EP+LSM+L FRA+KLLEL+ K+RIFV GR +M Sbjct: 651 ALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMM 710 Query: 2471 GCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRI 2650 GCLDE R L+YG++FVQV+ RS F I+ G V+VAKNPCLHPGDVR+ Sbjct: 711 GCLDETRTLDYGQVFVQVSGSRSEQRF------------IVQGKVVVAKNPCLHPGDVRV 758 Query: 2651 LRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYA 2830 L AV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD LIP PMDY+ Sbjct: 759 LTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYS 818 Query: 2831 APPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 P L VTIE+++E+F NY++NDS+GII+ Sbjct: 819 PAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIA 851 >ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis] Length = 1132 Score = 711 bits (1834), Expect = 0.0 Identities = 407/882 (46%), Positives = 541/882 (61%), Gaps = 21/882 (2%) Frame = +2 Query: 347 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHV-YAHAIVQLDRSFLA 523 +T+++ P G A + LE G VY+ K+ +T + V +AIVQ A Sbjct: 3 KTIQVFGFPAGVTAEAVKDFLES-KTGGGTVYALKL--RTPKKGVGRLYAIVQFTTKEAA 59 Query: 524 RKL----CTTLP---ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 682 + C T + + A + +D V +PR + LHFGC++S+ ++AVLW Sbjct: 60 DTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLW 119 Query: 683 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 862 +V F ++K+ L+ G YRL L + N+ + + YL+IQ+ A Sbjct: 120 R-GVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGA 178 Query: 863 PKIYYKE-PSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDA 1039 P+I+ K S D+ + FFK D+QW+RTTDFT + IG ST +C+EL + Sbjct: 179 PRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELP 238 Query: 1040 VIKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1219 K +F YK+ + L LVP Y+ILF++N LVQ G ++ Sbjct: 239 DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVA 298 Query: 1220 WPALGREFFRLLEPKSE-------EYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKAR 1378 P L F+RL++P E+ L+ L+E Y + ++ K + K Sbjct: 299 GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPS 358 Query: 1379 RYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDE 1558 A LDDGL+ VHRVQVTP++VY GPE++VSNRV+R F ID+F+R+SFIDED Sbjct: 359 SPA---ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 415 Query: 1559 RQLFATDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMF 1735 ++ +TDL + + + T++Y RILS FEFLAFSSSQLRESS WMF Sbjct: 416 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF 475 Query: 1736 ASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERD 1915 AS +TA IR WMGNF IRNVAK AAR+GQ FSSSK+TL V+ E+E D+ IE Sbjct: 476 ASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 535 Query: 1916 SDSYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRP 2092 YVFSDGIGK+S A ++A CG D PSAFQIRYGGYKGVVA DPTSS KLSLR Sbjct: 536 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRD 595 Query: 2093 SMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDH 2272 SMRK++SE +DVL+W+K++PCFLNRQ+I+LLSTLG+ DE FE Q+E + +LD IL Sbjct: 596 SMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 655 Query: 2273 KDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVP 2452 A E L++MS GEN N++ +L CGY P EP+LSM+L FRA+KLLEL+ K RIF+P Sbjct: 656 PLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 715 Query: 2453 KGRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKR---IITGTVIVAKNP 2623 GR +MGCLDE R L YG++FVQ++ G + +S R R I+ G V+VAKNP Sbjct: 716 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 775 Query: 2624 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 2803 CLHPGDVR+L+AV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ LIPP Sbjct: 776 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 835 Query: 2804 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 D PMDY + L+ V IED++E+F NY++NDS+GII+ Sbjct: 836 QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIA 877 >ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana] gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName: Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1; AltName: Full=RNA-directed RNA polymerase 1 gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19 [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana] Length = 1107 Score = 711 bits (1834), Expect = 0.0 Identities = 411/876 (46%), Positives = 544/876 (62%), Gaps = 15/876 (1%) Frame = +2 Query: 347 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 520 +T+++ P G A ++ LE L G VY+ K+ K+ PR +AIVQ Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VYAIVQFTSERH 58 Query: 521 ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 685 R + T + ++A + +D+V KPR S I+ ++ FGCQVS ++ LW+ Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118 Query: 686 CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAP 865 DV F ++KL + YRL LS+ N+ + +S +LVIQV AP Sbjct: 119 AQ-DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 177 Query: 866 KIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 1045 KI+ KE + I +F+ GSD QWIRTTDFT + IG ST+ CLEL Sbjct: 178 KIFEKE-DQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDF 236 Query: 1046 KNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1219 + +F NY + R + L + LVP ++ILF++N LVQ LS Sbjct: 237 RENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLS 296 Query: 1220 WPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 1384 PAL +F+RLL K + + LF L E Y P + KK I K + Sbjct: 297 GPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYE-PAHWLRDEYKKWI--SKGKLP 353 Query: 1385 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 1564 LDDGL+ ++RVQVTP +VY GPEV+VSNRV+R +S+YI++F+RVSF+DED + Sbjct: 354 LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 413 Query: 1565 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1744 + + DL + + ++ TKLY RI S FEFLAFSSSQLRE+S WMFA Sbjct: 414 VRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 471 Query: 1745 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1924 +++TA IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ I Sbjct: 472 DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 531 Query: 1925 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 2101 YVFSDGIGKIS A ++A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM Sbjct: 532 YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 591 Query: 2102 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDM 2281 KF+SEN +DVL+W+K++PC++NRQ+ITLLSTLGV D FE Q+E ++RLD IL H Sbjct: 592 KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 651 Query: 2282 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 2461 A E L +M+ GEN N++ ++ CGY P EP+LSM+L FRA+KLLEL+ K RIF+ GR Sbjct: 652 AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 711 Query: 2462 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGD 2641 +MGCLDE R LEYG++ VQ ++P R+ IITG V+VAKNPCLHPGD Sbjct: 712 SMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHPGD 760 Query: 2642 VRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPM 2821 VR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ L+PP PM Sbjct: 761 VRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPM 820 Query: 2822 DYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 DY P L+ VTIE+++E+FANY++NDS+GII+ Sbjct: 821 DYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIA 856 >ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera] Length = 1109 Score = 711 bits (1834), Expect = 0.0 Identities = 406/882 (46%), Positives = 537/882 (60%), Gaps = 21/882 (2%) Frame = +2 Query: 347 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 526 +T+++ +P AN++ LE E G + + +I KQ HA VQ LA Sbjct: 3 KTIQVYGVPSNVSANEIKEFLEKYTGE-GTIEALEI-KQPKSGVSMTHAKVQFTSLRLAE 60 Query: 527 KLCTTLP----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDS 694 + + ++A + D++ KPR + LHFG Q+S+ R+ VLW Sbjct: 61 LIISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKA-I 119 Query: 695 DVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIY 874 +V +F ++K + L+ Y+L LS N+ + +L+IQ+ AP+IY Sbjct: 120 NVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIY 179 Query: 875 YKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNS 1054 K+ S+ +FK D+QW+R DFT + SIG S+++CLEL G++ + Sbjct: 180 EKDVSA--------LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCEN 231 Query: 1055 FYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALG 1234 F YK+ L LVP +KILF++N LVQ G LS P L Sbjct: 232 FARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLD 291 Query: 1235 REFFRLLEPKSEEYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRYADFNTY---- 1402 FFR ++P+ + I AL+++ Y L++ Y+ + + TY Sbjct: 292 TNFFRWVDPQRIN-ISFIEHALEKLYY----------LEECCYEPVRWLHEQYRTYISKQ 340 Query: 1403 --------LDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDE 1558 LD GL+ V RVQ+TP KVY GPEV+VSNRV+R + E ID+F+RVSF+DE+ Sbjct: 341 VAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENS 400 Query: 1559 RQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFA 1738 ++ +T + +M N E + T +Y RILS F+FLA SSSQLR++S WMFA Sbjct: 401 EKIHSTVISPRMSN-EGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFA 459 Query: 1739 SNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDS 1918 S +TA IR+ MG+F IRNVAK AAR+GQ FSSSK+TL V + E+E DI RD Sbjct: 460 SRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDG 519 Query: 1919 DSYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPS 2095 +YVFSDGIGKIS LA +A+ CGC + PSAFQIRYGGYKGVVA+DPTSS KLSLR S Sbjct: 520 TTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKS 579 Query: 2096 MRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHK 2275 M K++SEN N+DVLSW+K+RPCFLNRQ+ITLLSTLGV+D FE Q+E +++LD IL Sbjct: 580 MFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDP 639 Query: 2276 DMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPK 2455 A E L++MS GEN N++ ML CGY P EP+LSM+L FRAAKLLEL+ K RIFVP Sbjct: 640 LRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPN 699 Query: 2456 GRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTT----GNQTSIRKRIITGTVIVAKNP 2623 GR +MGCLDE R LEYGE+FVQ++ FG + G+ + I+ G V+VAKNP Sbjct: 700 GRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNP 759 Query: 2624 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 2803 CLHPGDVRIL AVD P LHH+VDCVVFPQKG RPHP+ECSGSDLDGD+YFVCWD LIPP Sbjct: 760 CLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPP 819 Query: 2804 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 PMDY P L+ V IE+++E+F NY+ ND +GII+ Sbjct: 820 RQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIA 861 >ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata] gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata] Length = 1107 Score = 710 bits (1832), Expect = 0.0 Identities = 410/877 (46%), Positives = 545/877 (62%), Gaps = 16/877 (1%) Frame = +2 Query: 347 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 520 +T+++ P G A ++ LE L G VY+ K+ K+ PR AIVQ Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VFAIVQFTNEIY 58 Query: 521 ARKLCTTLPASTL------MQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 682 AR++ T L + A + +D+V KPR S +I+ +++FGCQVS LW Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLW 118 Query: 683 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 862 + DV F ++KL + YRL LS+ N+ + +S +LVIQV A Sbjct: 119 SAQ-DVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGA 177 Query: 863 PKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 1042 PKI+ KE + + +F+ GSD QWIRTTDFT + IG ST+ CLEL Sbjct: 178 PKIFEKE-DQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 236 Query: 1043 IKNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGIL 1216 + +F NY + R + L + +LVP ++ILF++N LVQ L Sbjct: 237 FRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACL 296 Query: 1217 SWPALGREFFRLLEPKSEEYVGRILF--ALQEISYSGPT-YTPEKSLKKIIYD--KKARR 1381 PAL + ++LL PK + R L L+++ Y G + Y P + L+K + K + Sbjct: 297 PGPALDLDVYQLLNPKK---IDRALIDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKL 353 Query: 1382 YADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 1561 LDDGL+ ++RVQVTP +VY GPEV+VSNRV+R +S+YI++F+RVSF+DED Sbjct: 354 PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 413 Query: 1562 QLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFAS 1741 ++ + DL + + ++ TKLY RI S FEFLAFSSSQLRE+S WMFA Sbjct: 414 KVRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 471 Query: 1742 NEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSD 1921 E +T+ IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ I Sbjct: 472 IEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGT 531 Query: 1922 SYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 2098 YVFSDGIGKIS A +A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM Sbjct: 532 RYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 591 Query: 2099 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKD 2278 KF+SEN +DVL+W+K++PC++NRQ+ITLLSTLGV D FE Q+E ++RLD IL Sbjct: 592 SKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILTDPL 651 Query: 2279 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKG 2458 A E L +M+ GEN N++ ++ CGY P EP+LSM+L FRA+KLLEL+ K RIF+ G Sbjct: 652 EAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGG 711 Query: 2459 RCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPG 2638 R +MGCLDE R LEYG++ VQ ++P R+ IITG V+VAKNPCLHPG Sbjct: 712 RSMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHPG 760 Query: 2639 DVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMP 2818 DVR+L AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ LIPP P Sbjct: 761 DVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEP 820 Query: 2819 MDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 MDY P L+ VTIE+++E+FANY++NDS+GII+ Sbjct: 821 MDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIA 857 >ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera] Length = 1121 Score = 708 bits (1828), Expect = 0.0 Identities = 404/880 (45%), Positives = 540/880 (61%), Gaps = 18/880 (2%) Frame = +2 Query: 344 SRTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLA 523 S+T+++ P A+++ LE E G + + +I KQ HA VQ LA Sbjct: 2 SKTIQVYGFPSIVSADEIKEFLEKYTGE-GTIEALEI-KQPRSGASMTHAKVQFTSFELA 59 Query: 524 RKLCTTLPAST-----LMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTC 688 + T ++A + D++ KPR + LHFGCQ+S R+ VLW Sbjct: 60 EFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKA 119 Query: 689 DSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPK 868 +V +F S ++K + L+ Y+L LS+ N+ + +L+IQ+ AP+ Sbjct: 120 -INVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178 Query: 869 IYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIK 1048 IY K+ ++ +FK D+QW+R DFT + IG S ++CLEL G++ + Sbjct: 179 IYEKDVPV-------LSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFR 231 Query: 1049 NSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPA 1228 +F YK+ L LVP ++ILF++N LVQ G LS P Sbjct: 232 ENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPT 291 Query: 1229 LGREFFRLLEPKSE-----EYVGRILFALQEISYSGPTYTPEKS---LKKIIYDKKARRY 1384 L FFRL++P+ E+ L+ L+E Y + E+ +KK + A Sbjct: 292 LDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKPVAGSPA--- 348 Query: 1385 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 1564 LD GL+ V RVQ+TP KVY GPEV+VSNRV+R + E ID+F+RVSF+DE+ + Sbjct: 349 ----ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEK 404 Query: 1565 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1744 + +T + +M E + T +Y RILS F+FLAFSSSQLR++S WMFAS Sbjct: 405 IHSTVISPRMSK-EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASR 463 Query: 1745 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1924 +TA IR+WMG+F IRNVAK AAR+GQ FSSSK+TL V + E+E+ DI I + + Sbjct: 464 PGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTT 523 Query: 1925 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 2101 YVFSDGIGKIS LA +A+ CGC PSAFQIRYGGYKGVVA+DPTSS KLSLR SM Sbjct: 524 YVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMF 583 Query: 2102 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDM 2281 K++S+N N+DVL+W+K++P FLNRQ+ITLLSTLGV+D FE Q+ +++LD IL Sbjct: 584 KYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVA 643 Query: 2282 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 2461 A E L++MS GEN NV+ ML CGY P EP+LSM+L FRAAKLLEL+ K RIFVP GR Sbjct: 644 AQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGR 703 Query: 2462 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTT----GNQTSIRKRIITGTVIVAKNPCL 2629 +MGCLDE R LEYGE+FVQ++ FG + G+ + I+ G ++VAKNPCL Sbjct: 704 SMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCL 763 Query: 2630 HPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDV 2809 HPGDVR+L AV+ P LHH+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD LIPP Sbjct: 764 HPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQ 823 Query: 2810 DMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 PMDY P L+ V IE+++E+F NY++NDS+GII+ Sbjct: 824 INPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIA 863 >gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana] Length = 1107 Score = 707 bits (1826), Expect = 0.0 Identities = 410/876 (46%), Positives = 543/876 (61%), Gaps = 15/876 (1%) Frame = +2 Query: 347 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 520 +T+++ P G A ++ LE L G VY+ K+ K+ PR +AIVQ Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VYAIVQFTSERH 58 Query: 521 ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 685 R + T + ++A + +D+V KPR S I+ ++ FGCQVS ++ LW+ Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118 Query: 686 CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAP 865 DV F ++KL + YRL LS+ N+ + +S +LVIQV AP Sbjct: 119 AQ-DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 177 Query: 866 KIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 1045 KI+ KE + I +F+ GSD QWIRTTDFT + IG ST+ CLEL Sbjct: 178 KIFEKE-DQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDF 236 Query: 1046 KNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1219 + +F NY + R + L + LVP ++ILF++N LVQ LS Sbjct: 237 RENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLS 296 Query: 1220 WPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 1384 PAL +F+RLL K + + LF L E Y P + KK I K + Sbjct: 297 GPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYE-PAHWLRDEYKKWI--SKGKLP 353 Query: 1385 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 1564 LDDGL+ ++RVQVTP +VY GPEV+VSNRV+R +S+YI++F+RVSF+DED + Sbjct: 354 LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 413 Query: 1565 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1744 + + DL + + ++ TKLY RI S FEFLAFSSSQLRE+S WMFA Sbjct: 414 VRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 471 Query: 1745 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1924 +++TA IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ I Sbjct: 472 DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 531 Query: 1925 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 2101 YVFSDGIGKIS A ++A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM Sbjct: 532 YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 591 Query: 2102 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDM 2281 KF+SEN +DVL+W+K++PC++NRQ+ITLLSTLGV D FE Q+E ++RLD IL H Sbjct: 592 KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 651 Query: 2282 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 2461 A E L +M+ GEN N++ ++ CGY P EP+LSM+L FRA+KLLEL+ K RIF+ GR Sbjct: 652 AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 711 Query: 2462 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGD 2641 +MGCLDE R LEYG++ VQ ++P R+ IITG V+VAKNPCLH GD Sbjct: 712 SMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHSGD 760 Query: 2642 VRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPM 2821 VR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ L+PP PM Sbjct: 761 VRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPM 820 Query: 2822 DYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 DY P L+ VTIE+++E+FANY++NDS+GII+ Sbjct: 821 DYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIA 856 >gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] Length = 1133 Score = 706 bits (1823), Expect = 0.0 Identities = 408/882 (46%), Positives = 552/882 (62%), Gaps = 21/882 (2%) Frame = +2 Query: 347 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQ---LDRSF 517 +T++++ P A + LEG +G VY+ KI + T ++AIVQ ++ + Sbjct: 3 KTIQLSGFPSHVSAESVKEFLEGHTG-RGTVYAIKI-RPTKNGGSRSYAIVQFMTVETAE 60 Query: 518 LARKLCTTLP--ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCD 691 L +L + + A V+ RD+V KPR + + LHFGCQ+S +++ LW Sbjct: 61 LIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRV- 119 Query: 692 SDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKI 871 +V +F +++L LT + YRL L + NV + + YL+IQ+ AP++ Sbjct: 120 GNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRV 179 Query: 872 YYKEP--SSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 1045 Y KE S D+ + + +FK D+QW+R TDFT + IG+S+++ LEL G + Sbjct: 180 YEKEVRISFDILENP-LFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDL 238 Query: 1046 KNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWP 1225 + +F YK+ E L LVP ++ +F++N L+Q G LS P Sbjct: 239 RENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGP 298 Query: 1226 ALGREFFRLLEPKSEEYVGRI------LFALQEISYSGPTYTPEKSLKKIIYDKKARRYA 1387 L +F+RL++P+ V I LF L+E Y + E+ K + + + A Sbjct: 299 TLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPA 358 Query: 1388 DFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQL 1567 LD GL+ V RVQVTP+KVY GPE++VSNRV+R++ +YID F+RVSF+DE+ +L Sbjct: 359 ---IALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKL 415 Query: 1568 FATDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1744 F+TDL + N E + T +Y RILS FEFLAFSSSQLR++SLWMFA+ Sbjct: 416 FSTDLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAV 475 Query: 1745 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1924 + +A+TIR W+G+F SIRNVAK AAR+GQ F SS +TL V ESE E +DI IER + Sbjct: 476 DGHSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVK 535 Query: 1925 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 2101 YVFSDGIGKIS A+ +A CG D VPSAFQIRY GYKGVVA+DPTSS KLSLR SM Sbjct: 536 YVFSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMW 595 Query: 2102 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDM 2281 K++SE +DVL+++K + C+LNRQ+ITLLSTLGV D FE Q+E + +L+ IL+ Sbjct: 596 KYESELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLR 655 Query: 2282 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 2461 A E L +MS GE N++ +L CGY P EP+LSM+L AFRA+KL EL+ K RI +P GR Sbjct: 656 AREALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGR 715 Query: 2462 CLMGCLDEYRILEYGEIFVQVT----EP--RSSLHFGTTGNQTSIRKRIITGTVIVAKNP 2623 +MGCLDE R LEYGE+FVQ + P S G TG S + I+ G V+VAKNP Sbjct: 716 AMMGCLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTG---SGQNYIVVGRVVVAKNP 772 Query: 2624 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 2803 CLHPGDVR+LRAV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ LIP Sbjct: 773 CLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQ 832 Query: 2804 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 PMDY+ P L+ V IE++QE+F NY++NDS+GII+ Sbjct: 833 KQFEPMDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIA 874 >ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum] Length = 1115 Score = 706 bits (1822), Expect = 0.0 Identities = 386/803 (48%), Positives = 520/803 (64%), Gaps = 10/803 (1%) Frame = +2 Query: 551 STLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKK 730 S+ ++A + D+V R H+ L+FGCQ+S +++AVL + ++V +F +KK Sbjct: 73 SSYLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKK 129 Query: 731 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGL 910 F L+ Y+L LS+ N+ + + +L+IQ++ AP+IY + +S Sbjct: 130 FFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS------ 183 Query: 911 WIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLS 1090 FFK D+QW+RTTDF ++ IG S+S+CL+ G + SF++Y + N++ Sbjct: 184 -CYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNIT 241 Query: 1091 LHINXXXXXXXR--LVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPK 1264 L + LVP+ YKILF++++LVQ G + PAL FFRL++P+ Sbjct: 242 LQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRLVDPQ 301 Query: 1265 SEEYVGRILFALQEISYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRV 1435 V I AL+++ Y Y P + L + Y K + + LDDGL+ V RV Sbjct: 302 RRN-VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRV 360 Query: 1436 QVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKY 1615 VTP KVY GPEV+VSNRV+R +SE ID+F+RVSF+DE+ +L++TDL K G Sbjct: 361 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR 420 Query: 1616 TKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLS 1795 T +Y+RILS FEFLAFSSSQLR++S+WMFAS +TA IR WMG+F Sbjct: 421 TNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQ 480 Query: 1796 IRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEE 1975 I+NVAK AAR+GQ F SSK+TL V E+E D+ + SYVFSDGIGKIS A Sbjct: 481 IKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKVH--GTSYVFSDGIGKISADFARR 538 Query: 1976 LAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFR 2155 +A CG Y PSAFQIRYGGYKGVVA+DP SS KLSLR SM K++S+N +DVL W+K++ Sbjct: 539 VASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQ 598 Query: 2156 PCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVII 2335 PCFLNRQ++TLLSTLGV+D+ E Q+E +++LD IL A E L++MS GEN N++ Sbjct: 599 PCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILK 658 Query: 2336 NMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIF 2515 ML CGY P EP+LSM+L FRA+KLL+L+ ++RIF+P GR +MGCLDE R LEYG++F Sbjct: 659 AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVF 718 Query: 2516 VQVT-----EPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLH 2680 VQ T E LH T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LH Sbjct: 719 VQFTGSGHREFSEDLHPFNNSRSTNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 777 Query: 2681 HLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRP 2860 H+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD+ +IPP M+Y P I L+ Sbjct: 778 HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHD 837 Query: 2861 VTIEDIQEFFANYMLNDSIGIIS 2929 VTIE+++E+F NY++NDS+GII+ Sbjct: 838 VTIEEVEEYFTNYIVNDSLGIIA 860 >emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri] Length = 1107 Score = 705 bits (1819), Expect = 0.0 Identities = 406/875 (46%), Positives = 546/875 (62%), Gaps = 14/875 (1%) Frame = +2 Query: 347 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 520 +T+++ P G A ++ LE L G VY+ K+ K+ PR AIVQ Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VFAIVQFTNERY 58 Query: 521 ARKLCTTLPASTL------MQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 682 AR++ T L + A + +D+V KPR S +I+ +++FGCQVS ++ LW Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLW 118 Query: 683 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 862 + DV F ++KL + YRL LS+ N+ + +S +LVIQV A Sbjct: 119 SAQ-DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGA 177 Query: 863 PKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 1042 PKI+ KE + + +F+ GSD QWIRTTDFT + IG ST+ CLEL Sbjct: 178 PKIFEKE-DQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 236 Query: 1043 IKNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGIL 1216 + +F NY + R + L + +LVP ++ILF++N LVQ L Sbjct: 237 FRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACL 296 Query: 1217 SWPALGREFFRLLEPKSEEYVGRILFALQEISYSGPT-YTPEKSLKKIIYD--KKARRYA 1387 PAL + ++LL PK I L+++ + G + Y P + L+K + K + Sbjct: 297 PGPALDLDVYQLLNPKKYNRA-LIDHCLEKLFHLGESCYEPARWLRKQYKELSSKGKLPL 355 Query: 1388 DFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQL 1567 LDDGL+ ++RVQVTP +VY GPEV+VSNRV+R +S+YI++F+RVSF+DED ++ Sbjct: 356 SPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKV 415 Query: 1568 FATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNE 1747 + DL + + ++ TKLY RI S FEFLAFSSSQLRE+S WMFA + Sbjct: 416 RSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPID 473 Query: 1748 QVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSY 1927 +T+ IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ I Y Sbjct: 474 GLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRY 533 Query: 1928 VFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRK 2104 VFSDGIGKIS A +A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM K Sbjct: 534 VFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSK 593 Query: 2105 FDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMA 2284 F+SEN +DVL+W+K++PC++NRQ+ITLLSTLGV+D F+ Q+E ++RLD IL A Sbjct: 594 FESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTDPLEA 653 Query: 2285 LEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRC 2464 E L +M+ GEN N++ ++ CGY P EP+LSM+L FRA+KLLEL+ K RIF+ GR Sbjct: 654 HEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRS 713 Query: 2465 LMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDV 2644 +MGCLDE R LEYG++ VQ ++P R+ IITG V+VAKNPCLHPGDV Sbjct: 714 MMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHPGDV 762 Query: 2645 RILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMD 2824 R+L AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ LIPP PMD Sbjct: 763 RVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMD 822 Query: 2825 YAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 Y P L+ VTIE+++E+FANY++NDS+GII+ Sbjct: 823 YTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIA 857 >gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum] Length = 1065 Score = 704 bits (1818), Expect = 0.0 Identities = 381/781 (48%), Positives = 511/781 (65%), Gaps = 10/781 (1%) Frame = +2 Query: 617 HIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVR 796 H+ L+FGCQ+S +++AVL + ++V +F +KK++ L+ Y+L LS+ N+ Sbjct: 93 HMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIW 150 Query: 797 YMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTR 976 + + +L+IQ++ AP+IY + +S FFK D+QW+RTTDF Sbjct: 151 QVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS-------CYSFFKETPDDQWVRTTDFAP 203 Query: 977 NFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXXR--LVPSXXXX 1150 ++ IG S+S+CL+ G + SF++Y + N++L + LVP+ Sbjct: 204 SW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPP 262 Query: 1151 XXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEISYSGPT- 1327 YKILF++++LVQ G + P+L FFRL++P+ V I AL+++ Y Sbjct: 263 EGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRN-VACIEQALEKLYYLKECC 321 Query: 1328 YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIR 1501 Y P + L + Y K + + LDDGL+ V RV VTP KVY GPEV+VSNRV+R Sbjct: 322 YDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 381 Query: 1502 QFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXF 1681 +SE ID+F+RVSF+DE+ +L++T+L K G T +Y RILS F Sbjct: 382 NYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTMQKGFVIGDKKF 441 Query: 1682 EFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTL 1861 EFLAFSSSQLR++S+WMFAS +TA IR WMG+F I+NVAK AAR+GQ F SSK+TL Sbjct: 442 EFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETL 501 Query: 1862 CVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYK 2041 V E+E D+ + SYVFSDGIGKIS A +A CG Y PSAFQIRYGGYK Sbjct: 502 SVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYK 559 Query: 2042 GVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERF 2221 GVVA+DP SS KLSLR SM K++S+N +DVL W+K++PC+LNRQ+ITLLSTLGV+D+ Sbjct: 560 GVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLGVKDDIL 619 Query: 2222 ENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAF 2401 E Q+E +++LD IL A E L++MS GEN N++ ML CGY P EP+LSM+L F Sbjct: 620 EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTF 679 Query: 2402 RAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIFVQVT-----EPRSSLHFGTTGN 2566 RA+KLL+L+ K+RIF+P GR +MGCLDE R LEYG++FVQ T E LH Sbjct: 680 RASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSR 739 Query: 2567 QTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSG 2746 T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LHH+VDCVVFPQKGKRPHPNECSG Sbjct: 740 STNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 798 Query: 2747 SDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGII 2926 SDLDGD+YFVCWD+ +IPP PM+Y P I L+ VTIE+++E+F NY++NDS+GII Sbjct: 799 SDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGII 858 Query: 2927 S 2929 S Sbjct: 859 S 859 >gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum] Length = 935 Score = 702 bits (1813), Expect = 0.0 Identities = 378/781 (48%), Positives = 511/781 (65%), Gaps = 10/781 (1%) Frame = +2 Query: 617 HIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVR 796 H+ L+FGCQ+S +++AVL + ++V +F +K F L+ Y+L LS+ N+ Sbjct: 94 HMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKNFFFFLSSGSADYKLQLSYENIW 151 Query: 797 YMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTR 976 + + +L+IQ++ AP+IY + +S FFK D+QW+RTTDFT Sbjct: 152 QVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS-------CYSFFKETPDDQWVRTTDFTP 204 Query: 977 NFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXXR--LVPSXXXX 1150 ++ IG S+S+CL+ G + SF++Y + N++L + LVP+ Sbjct: 205 SW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPP 263 Query: 1151 XXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEISYSGPT- 1327 YKILF++++LVQ G + PAL FFRL++P+ V I AL+++ Y Sbjct: 264 EGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRN-VACIEQALEKLYYLKECC 322 Query: 1328 YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIR 1501 Y P + L + Y K + + LDDGL+ V RV VTP KVY GPEV+VSNRV+R Sbjct: 323 YDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382 Query: 1502 QFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXF 1681 +SE ID+F+RVSF+DE+ +L++T+L K G T +Y RILS F Sbjct: 383 NYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKF 442 Query: 1682 EFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTL 1861 EFLAFSSSQLR++S+WMFAS +TA IR+WMG+F I+NVAK AAR GQ F SS++TL Sbjct: 443 EFLAFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETL 502 Query: 1862 CVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYK 2041 V E+E D+ + SYVFSDGIGKIS A ++A +CG Y PSAFQIRYGGYK Sbjct: 503 SVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARKVASNCGLQYTPSAFQIRYGGYK 560 Query: 2042 GVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERF 2221 GVVA+DP SS KLSLR SM K++S+N +DVL W+K++PC+LNRQ++TLLSTLGV+D+ Sbjct: 561 GVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVL 620 Query: 2222 ENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAF 2401 E Q+E +++LD IL A E L++MS GEN N++ ML CGY P EP+LSM+L F Sbjct: 621 EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTF 680 Query: 2402 RAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIFVQVT-----EPRSSLHFGTTGN 2566 RA+KLL+L+ K+RIF+P GR +MGCLDE R LEYG++FVQ T E LH Sbjct: 681 RASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSR 740 Query: 2567 QTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSG 2746 T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LHH+VDCVVFPQKGKRPHPNECSG Sbjct: 741 STNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 799 Query: 2747 SDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGII 2926 SDLDGD+YFVCWD+ +IPP M++ PP I L+ VTIE+++E+F NY++ND +GII Sbjct: 800 SDLDGDIYFVCWDQDMIPPRQVQAMEFPPPPSIQLDHDVTIEEVEEYFTNYIVNDGLGII 859 Query: 2927 S 2929 + Sbjct: 860 A 860 >gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum] Length = 1115 Score = 702 bits (1812), Expect = 0.0 Identities = 383/803 (47%), Positives = 520/803 (64%), Gaps = 10/803 (1%) Frame = +2 Query: 551 STLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKK 730 S+ ++A + D+V R H+ L+FGCQ+S +++AVL + ++V +F +KK Sbjct: 73 SSYLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISEDKFAVLGS--TEVSIKFGIGLKK 129 Query: 731 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGL 910 F L+ Y+L LS+ N+ + + +L+IQ++ AP+IY + +S Sbjct: 130 FFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS------ 183 Query: 911 WIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLS 1090 FFK D+QW+RTTDFT ++ IG S+S+CL+ G + SF++Y + N++ Sbjct: 184 -CYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNIT 241 Query: 1091 LHINXXXXXXXR--LVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPK 1264 L + LVP+ YKILF++++LVQ G + PAL FFRL++P+ Sbjct: 242 LQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQ 301 Query: 1265 SEEYVGRILFALQEISYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRV 1435 V I AL+++ Y Y P + L + Y K + + LDDGL+ V RV Sbjct: 302 RRN-VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRV 360 Query: 1436 QVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKY 1615 VTP KVY GPEV+VSNRV+R +SE ID+F+RVSF+DE+ +L++T+L K G Sbjct: 361 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR 420 Query: 1616 TKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLS 1795 T +Y RILS FEFLAFSSSQLR++S+WMFAS +T IR+WMG+F Sbjct: 421 TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQ 480 Query: 1796 IRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEE 1975 I+NVAK AAR+GQ F SS++TL V E+E D+ + SYVFSDGIGKIS A Sbjct: 481 IKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARR 538 Query: 1976 LAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFR 2155 +A CG Y PSAFQIRYGGYKGVVA+DP SS KLSLR SM K++S+N +DVL W+K++ Sbjct: 539 VASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQ 598 Query: 2156 PCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVII 2335 PC+LNRQ++TLLSTLGV+D+ E Q+E +++LD IL A E L++MS GEN N++ Sbjct: 599 PCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILK 658 Query: 2336 NMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIF 2515 ML CGY P EP+LSM+L FRA+KLL+L+ ++RIF+P GR +MGCLDE R LEYG++F Sbjct: 659 AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVF 718 Query: 2516 VQVT-----EPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLH 2680 VQ T E LH T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LH Sbjct: 719 VQFTGAGHREFSEDLHPFNNSRSTNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 777 Query: 2681 HLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRP 2860 H+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD+ +IPP M+Y P I L+ Sbjct: 778 HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHN 837 Query: 2861 VTIEDIQEFFANYMLNDSIGIIS 2929 VTIE+++E+F NY++NDS+GII+ Sbjct: 838 VTIEEVEEYFTNYIVNDSLGIIA 860 >ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp. vesca] Length = 1119 Score = 702 bits (1811), Expect = 0.0 Identities = 404/874 (46%), Positives = 537/874 (61%), Gaps = 13/874 (1%) Frame = +2 Query: 347 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 526 +T+++ P G A + LE E G V++ K+ + YA I+Q A Sbjct: 3 KTIQLHGFPSGQTAENIKEFLEKHTGE-GSVFALKLRPAKSGGRFYA--IIQFQSISQAE 59 Query: 527 KLCTTLPASTLMQATVL----PRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDS 694 K+ + A + L D+V KPR + LH GCQV+ ++++VLW + Sbjct: 60 KIISLANARLWYGRSYLNARPAHDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWGT-A 118 Query: 695 DVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIY 874 +V +F ++ L L R YRL LS+ N+ + + YLVIQ+Y P+IY Sbjct: 119 EVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRIY 178 Query: 875 YKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNS 1054 +E S G+G +F+ D W+RTTDFT IG S+S+CL L + + + Sbjct: 179 QQEVCSSGGNGYEDMNYFRDPDD--WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEEN 236 Query: 1055 FYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALG 1234 F YK L LVP Y ILF++N LVQ+G LS P L Sbjct: 237 FAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTLD 296 Query: 1235 REFFRLLEPKSEEYVGR--ILFALQEIS-YSGPTYTP----EKSLKKIIYDKKARRYADF 1393 F+RL++P+ + R I FAL ++S Y P + +K + KK + A Sbjct: 297 NNFYRLVDPRR---ISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALI 353 Query: 1394 NTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFA 1573 + LD GL+ V RVQ+TP+KVY GPEV+VSNR++RQ+S ID+F+RVSF+DE+ +L++ Sbjct: 354 S--LDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYS 411 Query: 1574 TDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQV 1753 TDL P + T++Y R+LS FEFLAFSSSQLRE+SLWMFA ++ Sbjct: 412 TDLS---PRTSTRKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDED 468 Query: 1754 TAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVF 1933 +A+TIRA MG+F IRNVAK AAR+GQ F SS +TL V +E+E D+T+ YVF Sbjct: 469 SADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVF 528 Query: 1934 SDGIGKISVALAEELAVHCGCD-YVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFD 2110 SDGIGKIS AE +A CG + PSAFQIRYGGYKGVVA+DPTSS KLSLR SM K++ Sbjct: 529 SDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYE 588 Query: 2111 SENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMALE 2290 SEN +DVL+ +K++PCFLNRQ+ITLLSTL V+D F Q+ + +L+ IL A E Sbjct: 589 SENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEE 648 Query: 2291 VLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLM 2470 L +MS GE+ NV+ +L CGY P EP+LSM+L FRA+KLLEL+ K RIF+P GR +M Sbjct: 649 ALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMM 708 Query: 2471 GCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRK-RIITGTVIVAKNPCLHPGDVR 2647 GCLDE R LEYG++FVQ + R F +S+ II G V+VAKNPCLHPGDVR Sbjct: 709 GCLDETRTLEYGQVFVQFSGKRRRQLFDDICIHSSLDSCFIIEGKVVVAKNPCLHPGDVR 768 Query: 2648 ILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDY 2827 +LRAV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD LIPP PMDY Sbjct: 769 VLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDY 828 Query: 2828 AAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 P I +++ VTIE+++E+F NY++NDS+GII+ Sbjct: 829 TPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIA 862 >ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum] gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Solanum lycopersicum] Length = 1114 Score = 700 bits (1806), Expect = 0.0 Identities = 378/775 (48%), Positives = 508/775 (65%), Gaps = 10/775 (1%) Frame = +2 Query: 635 LHFGCQVSHNRYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYS 814 L+FGCQ+S +++AVL + ++V +F +KK F L+ Y+L LS+ N+ + + Sbjct: 100 LNFGCQISDDKFAVLGS--TEVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHR 157 Query: 815 TDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGN 994 +L+IQ++ AP+IY + +S FFK D+QW+RTTDF ++ IG Sbjct: 158 PYGQNAQFLLIQLFGAPRIYKRLENS-------CYSFFKETPDDQWVRTTDFPPSW-IGL 209 Query: 995 STSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXXR--LVPSXXXXXXXXXX 1168 S+S+CL+ G + + SF++Y + N++L + LVP+ Sbjct: 210 SSSLCLQFRRGVRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIP 269 Query: 1169 YKILFQVNALVQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEISYSGPT-YTPEKS 1345 YKILF++++LVQ G + PAL FFRL++P+ V I AL+++ Y Y P + Sbjct: 270 YKILFKISSLVQHGCIPGPALNVYFFRLVDPRRRN-VACIEHALEKLYYIKECCYDPVRW 328 Query: 1346 LKKII--YDKKARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYI 1519 L + Y K + + LDDGL+ V RV VTP KVY GPEV+VSNRV+R +SE I Sbjct: 329 LTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDI 388 Query: 1520 DDFIRVSFIDEDERQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFS 1699 D+F+RVSF+DE+ +L++TDL K G T +Y RILS FEFLAFS Sbjct: 389 DNFLRVSFVDEEWEKLYSTDLLPKASTGSGVRTNIYERILSTLRKGFVIGDKKFEFLAFS 448 Query: 1700 SSQLRESSLWMFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESE 1879 SSQLR++S+WMFAS +TA IRAWMG+F I+NVAK AAR+GQ F SS++TL V E Sbjct: 449 SSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHE 508 Query: 1880 VEDCNDITIERDSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMD 2059 +E D+ + SYVFSDGIGKIS A +A CG Y PSAFQIRYGGYKGVV +D Sbjct: 509 IEVIPDVKVH--GTSYVFSDGIGKISGDFAHRVASKCGLQYTPSAFQIRYGGYKGVVGVD 566 Query: 2060 PTSSYKLSLRPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQE 2239 P SS KLSLR SM K++S+N +DVL W+K++PC+LNRQ+ITLLSTLGV+DE E Q+E Sbjct: 567 PDSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKE 626 Query: 2240 DINRLDLILDHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLL 2419 +++LD IL A E L++MS GEN N++ ML CGY P EP+LSM+L FRA+KLL Sbjct: 627 AVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLL 686 Query: 2420 ELKHKARIFVPKGRCLMGCLDEYRILEYGEIFVQVT-----EPRSSLHFGTTGNQTSIRK 2584 +L+ ++RIF+P GR +MGCLDE R LEYG++FVQ T E LH T+ Sbjct: 687 DLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTN-SN 745 Query: 2585 RIITGTVIVAKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGD 2764 I+ G V+VAKNPCLHPGD+R+L+AV+ LHH+VDCVVFPQKGKRPHPNECSGSDLDGD Sbjct: 746 FILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGD 805 Query: 2765 LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIIS 2929 +YFVCWD+ +IPP PM+Y P I L+ VTIE+++E+F NY++NDS+GII+ Sbjct: 806 IYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIA 860 >ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Solanum tuberosum] Length = 1115 Score = 699 bits (1804), Expect = 0.0 Identities = 384/803 (47%), Positives = 518/803 (64%), Gaps = 10/803 (1%) Frame = +2 Query: 551 STLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKK 730 S+ ++A + D+V E H+ L+FGCQ+S +++AVL + ++V +F +KK Sbjct: 73 SSYLKAREMETDLVQL-WEYVDHMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKK 129 Query: 731 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGL 910 F L+ Y+L LS+ N+ + + +L+IQ++ AP+IY + +S Sbjct: 130 FFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS------ 183 Query: 911 WIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLS 1090 FFK D+QW+RTTDF ++ IG S+S+CL+ G + SF++Y + N++ Sbjct: 184 -CYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNIT 241 Query: 1091 LHINXXXXXXXR--LVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPK 1264 L + LVP+ YKILF++++LVQ G + PAL FFRL++P+ Sbjct: 242 LQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQ 301 Query: 1265 SEEYVGRILFALQEISYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRV 1435 V I AL+++ Y Y P + L + Y K + + LDDGL+ V RV Sbjct: 302 RRN-VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRV 360 Query: 1436 QVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKY 1615 VTP KVY GPEV+VSNRV+R +SE ID+F+RVSF+DE+ +L++TDL K G Sbjct: 361 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR 420 Query: 1616 TKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLS 1795 T +Y RILS FEFLAFSSSQLR++S+WMFAS +TA IR WMG+F Sbjct: 421 TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQ 480 Query: 1796 IRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEE 1975 I+NVAK AAR+GQ F SS +TL V E+E D+ + SYVFSDGIGKIS A Sbjct: 481 IKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARR 538 Query: 1976 LAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFR 2155 +A CG + PSAFQIRYGGYKGVVA+DP SS KLSLR SM K++S+N +DVL W+K++ Sbjct: 539 VASKCGLQHTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQ 598 Query: 2156 PCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVII 2335 PC+LNRQ++TLLSTLGV+D+ E Q+E +++LD IL A E L++MS GEN N++ Sbjct: 599 PCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILK 658 Query: 2336 NMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIF 2515 ML CGY P EP+LSM+L FRA+KLL+L+ K+RIF+P GR +MGCLDE R LEYG++F Sbjct: 659 AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEYGQVF 718 Query: 2516 VQVT-----EPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLH 2680 VQ T E LH T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LH Sbjct: 719 VQFTGSGHREFSEDLHPFNNSRSTNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 777 Query: 2681 HLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRP 2860 H+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD+ +IPP M+Y P I L+ Sbjct: 778 HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHD 837 Query: 2861 VTIEDIQEFFANYMLNDSIGIIS 2929 VTIE+++E+F NY++NDS+GII+ Sbjct: 838 VTIEEVEEYFTNYIVNDSLGIIA 860