BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00018402
         (1390 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE77788.1| unknown [Picea sitchensis]                             400   e-109
ref|XP_006472762.1| PREDICTED: general transcription factor IIH ...   318   3e-84
ref|XP_002307429.2| basal transcription factor complex subunit-r...   318   3e-84
ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   310   7e-82
ref|XP_006347459.1| PREDICTED: general transcription factor IIH ...   310   1e-81
ref|XP_004241513.1| PREDICTED: general transcription factor IIH ...   310   1e-81
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   309   2e-81
gb|EOY16261.1| Basal transcription factor complex subunit-relate...   306   1e-80
ref|XP_006472763.1| PREDICTED: general transcription factor IIH ...   302   3e-79
gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus pe...   301   4e-79
ref|XP_006828057.1| hypothetical protein AMTR_s00008p00264310, p...   300   1e-78
ref|XP_004290858.1| PREDICTED: general transcription factor IIH ...   296   2e-77
ref|XP_004290857.1| PREDICTED: general transcription factor IIH ...   296   2e-77
ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group] g...   296   2e-77
ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Caps...   295   2e-77
dbj|BAK06937.1| predicted protein [Hordeum vulgare subsp. vulgare]    294   7e-77
ref|XP_004952041.1| PREDICTED: general transcription factor IIH ...   293   1e-76
ref|NP_001131186.1| hypothetical protein [Zea mays] gi|194688300...   293   1e-76
ref|NP_564050.1| basal transcription factor complex subunit-rela...   292   2e-76
ref|XP_003573866.1| PREDICTED: general transcription factor IIH ...   292   3e-76

>gb|ADE77788.1| unknown [Picea sitchensis]
          Length = 306

 Score =  400 bits (1027), Expect = e-109
 Identities = 198/296 (66%), Positives = 224/296 (75%), Gaps = 6/296 (2%)
 Frame = +3

Query: 159  MDSSAANAPQXXXXXXXXXXXTNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSIL 338
            M S+ +N PQ           TNPFFW            AS LTF+QFLEH  AFFNS+L
Sbjct: 6    MASAGSNPPQDDVSLVVVLLDTNPFFWASATSSGQ----ASSLTFSQFLEHVLAFFNSLL 61

Query: 339  LLHQLNHLVVIGTGMNTCEFIYDSTT------KVKELKGFNEFMTPSTLISQNLEEFVKK 500
            LLHQ+N LVVIGTG N+CEFIYDS+T      K K+ K   EF+TPST+I Q LE+FV++
Sbjct: 62   LLHQMNQLVVIGTGTNSCEFIYDSSTTNSEYKKSKDTKCSQEFLTPSTIIVQQLEDFVRR 121

Query: 501  DHELYKNNTETKNMYXXXXXXXXXXXCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGV 680
            D  L  NN  TKN++           CYIQR+IR    HPQPRILCLQGSPDGPQQ+V +
Sbjct: 122  DQALNTNNNATKNIHSLLSGSLSMALCYIQRIIRGGPSHPQPRILCLQGSPDGPQQYVAI 181

Query: 681  MNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLH 860
            MNAIFSAQRSM+P+D+CIVGS+HSAFLQQASHITGGIYLKPQ ++GLFQFLAMVFATDLH
Sbjct: 182  MNAIFSAQRSMVPVDSCIVGSQHSAFLQQASHITGGIYLKPQQLEGLFQFLAMVFATDLH 241

Query: 861  SRRFLQLPRPTGVDFRASCFCHKKAIDMGYVCSVCLSIFCEPLKKCSTCESDFTKQ 1028
            SRRFLQLPRPTGVDFRASCFCHKK IDMGYVCSVCLSIFCE  KKCSTCES F ++
Sbjct: 242  SRRFLQLPRPTGVDFRASCFCHKKTIDMGYVCSVCLSIFCEHSKKCSTCESTFNQK 297


>ref|XP_006472762.1| PREDICTED: general transcription factor IIH subunit 3-like isoform X1
            [Citrus sinensis]
          Length = 298

 Score =  318 bits (815), Expect = 3e-84
 Identities = 154/266 (57%), Positives = 191/266 (71%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNPFFW            +S L+F+QFL H  AFFN+IL L+QLN +VVI TG N+C+++
Sbjct: 22   TNPFFWS-----------SSSLSFSQFLTHVLAFFNAILTLNQLNQVVVIATGYNSCDYV 70

Query: 402  YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXXC 581
            YDS++   +  G     +    + QNLEEF+ KD +L K   E +              C
Sbjct: 71   YDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALC 130

Query: 582  YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 761
            YIQRV RS   HPQPRILCLQGSPDGP+Q+V +MNAIFSAQRSM+PID+C +G+++SAFL
Sbjct: 131  YIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 190

Query: 762  QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 941
            QQAS+ITGG++ KPQ + GLFQ+L  +F TDLHSR FLQLP+P GVDFRASCFCHK  ID
Sbjct: 191  QQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTID 250

Query: 942  MGYVCSVCLSIFCEPLKKCSTCESDF 1019
            MGY+CSVCLSI+C+ LKKCSTC S F
Sbjct: 251  MGYICSVCLSIYCKHLKKCSTCGSVF 276


>ref|XP_002307429.2| basal transcription factor complex subunit-related family protein
            [Populus trichocarpa] gi|550339079|gb|EEE94425.2| basal
            transcription factor complex subunit-related family
            protein [Populus trichocarpa]
          Length = 298

 Score =  318 bits (815), Expect = 3e-84
 Identities = 162/268 (60%), Positives = 191/268 (71%), Gaps = 2/268 (0%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNPFFW             S L+F+QFL H  AF NSILLL+QLN +VVI +G NTC++I
Sbjct: 22   TNPFFW----------TPPSSLSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCDYI 71

Query: 402  YDSTTKVKELKGFNEFMTPSTL--ISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXX 575
            YDS++   +L G  +   PS    + Q LEEF+ KD +L K  ++               
Sbjct: 72   YDSSSDASQL-GSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSMA 130

Query: 576  XCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSA 755
             CYIQRV RS   HPQPRILCLQGSPDGP+Q+V VMNAIFSAQRSM+PID+C VG+ +SA
Sbjct: 131  LCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNSA 190

Query: 756  FLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKA 935
            FLQQAS+ITGG+Y+KPQ + GLFQ+L  VFATDLHSR F+QLPRP GVDFRASCFCHK  
Sbjct: 191  FLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKTT 250

Query: 936  IDMGYVCSVCLSIFCEPLKKCSTCESDF 1019
            IDMGY+CSVCLSIFC   KKCSTC S F
Sbjct: 251  IDMGYICSVCLSIFCNHHKKCSTCGSVF 278


>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
            vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
            product [Vitis vinifera]
          Length = 297

 Score =  310 bits (795), Expect = 7e-82
 Identities = 160/268 (59%), Positives = 189/268 (70%), Gaps = 2/268 (0%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNPFFW             + L F++FL H  AF NSILL++QLN +VVI TG N+C FI
Sbjct: 22   TNPFFWS-----------TASLPFSKFLSHVLAFLNSILLINQLNQVVVIATGCNSCNFI 70

Query: 402  YDSTTKVKELKGFNEFMTP--STLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXX 575
            +DS++        N  M    S L+ Q LEEFV  D +L K                   
Sbjct: 71   FDSSSVPANPNLENGRMPALCSNLL-QKLEEFVTGDEKLSKEVLAAGIGSSLLSGSLSMA 129

Query: 576  XCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSA 755
             CYIQRV R+   HPQPRILCLQGSPDGP+Q+V VMNAIFSAQRSM+PID+C++G++HSA
Sbjct: 130  LCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSA 189

Query: 756  FLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKA 935
            FLQQAS+ITGG+YLKPQ + GLFQ+L+ VFATDLHSRRFLQLP+P GVDFRASCFCHK  
Sbjct: 190  FLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFRASCFCHKNT 249

Query: 936  IDMGYVCSVCLSIFCEPLKKCSTCESDF 1019
            IDMGY+CSVCLSIFC+  KKCSTC S F
Sbjct: 250  IDMGYICSVCLSIFCKHHKKCSTCGSVF 277


>ref|XP_006347459.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum
            tuberosum]
          Length = 290

 Score =  310 bits (793), Expect = 1e-81
 Identities = 153/266 (57%), Positives = 189/266 (71%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNP+FW     KN+        TF +F+ H  AF NSILLL+Q+N +VVI TG N+C+++
Sbjct: 22   TNPYFWSSM--KNTA------FTFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYV 73

Query: 402  YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXXC 581
            +DS+T           M  +  + + LE+FV KD  L + ++     +           C
Sbjct: 74   FDSSTSS---------MQRAECLLEKLEDFVDKDESLSQEDSVDGVGFSLLSGSLSMALC 124

Query: 582  YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 761
            YIQRV RS   HPQPRILCL GSPDGP Q+V VMN+IFSAQRSM+PID+C++GS+HSAFL
Sbjct: 125  YIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHSAFL 184

Query: 762  QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 941
            QQAS+ITGG+YLKPQ   GLFQ+L+ VFATDLHSR FLQLPRP GVDFRASCFCHK  ID
Sbjct: 185  QQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQLPRPVGVDFRASCFCHKNTID 244

Query: 942  MGYVCSVCLSIFCEPLKKCSTCESDF 1019
            MG++CSVCLSIFC+  KKCSTC S+F
Sbjct: 245  MGFICSVCLSIFCKHHKKCSTCGSNF 270


>ref|XP_004241513.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum
            lycopersicum]
          Length = 290

 Score =  310 bits (793), Expect = 1e-81
 Identities = 153/266 (57%), Positives = 189/266 (71%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNP+FW     KN+        TF +F+ H  AF NSILLL+Q+N +VVI TG N+C+++
Sbjct: 22   TNPYFWSSM--KNTA------FTFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYV 73

Query: 402  YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXXC 581
            +DS+T           M  +  + + LE+FV KD  L + ++     +           C
Sbjct: 74   FDSSTSS---------MQRAECLLEKLEDFVDKDESLSQEDSVDGVGFSLLSGALSMALC 124

Query: 582  YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 761
            YIQRV RS   HPQPRILCL GSPDGP Q+V VMN+IFSAQRSM+PID+C++GS+HSAFL
Sbjct: 125  YIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHSAFL 184

Query: 762  QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 941
            QQAS+ITGG+YLKPQ   GLFQ+L+ VFATDLHSR FLQLPRP GVDFRASCFCHK  ID
Sbjct: 185  QQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQLPRPVGVDFRASCFCHKNTID 244

Query: 942  MGYVCSVCLSIFCEPLKKCSTCESDF 1019
            MG++CSVCLSIFC+  KKCSTC S+F
Sbjct: 245  MGFICSVCLSIFCKHHKKCSTCGSNF 270


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
            sativus]
          Length = 295

 Score =  309 bits (791), Expect = 2e-81
 Identities = 156/268 (58%), Positives = 191/268 (71%), Gaps = 2/268 (0%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNPFFW             S L F++FL H  AF NSIL+L+QLN +VVIGTG  +C+++
Sbjct: 22   TNPFFWS-----------TSALPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYL 70

Query: 402  YDSTTKVKELKGFNEFMTPS--TLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXX 575
            Y+S++      G  +   P+  T + +NLEEFV  D +  K + +   M           
Sbjct: 71   YNSSSYSNH--GLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMA 128

Query: 576  XCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSA 755
             CYIQ+V RS + HPQPRILCLQGSPDGP+Q+V +MNAIFSAQRSM+PID+C +GS +SA
Sbjct: 129  LCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSA 188

Query: 756  FLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKA 935
            FLQQAS+ITGG+YLKPQ + GLFQ+L+ VF TDLHSR FLQLP+  GVDFRASCFCHKK 
Sbjct: 189  FLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKT 248

Query: 936  IDMGYVCSVCLSIFCEPLKKCSTCESDF 1019
            IDMGYVCSVCLSIFC+  KKCSTC S F
Sbjct: 249  IDMGYVCSVCLSIFCKHHKKCSTCGSVF 276


>gb|EOY16261.1| Basal transcription factor complex subunit-related isoform 1
            [Theobroma cacao]
          Length = 296

 Score =  306 bits (784), Expect = 1e-80
 Identities = 151/266 (56%), Positives = 186/266 (69%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNPFFW            AS L+F+QFL H  AF N+IL L+QLN +VVI TG N+C +I
Sbjct: 22   TNPFFWS-----------ASSLSFSQFLSHVLAFLNAILTLNQLNQVVVIATGYNSCNYI 70

Query: 402  YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXXC 581
            +DS++ + +           + + Q LEEF+ KD +L K   E +              C
Sbjct: 71   FDSSSDLNQSFENGRMPVMCSSLLQKLEEFLIKDEQLSKEVPEGRIKSSLLSGSLSMALC 130

Query: 582  YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 761
            YIQRV RS   HP PRILCLQGSPDGP+Q+V +MNAIFSAQRSM+PID+C +G+++SAFL
Sbjct: 131  YIQRVFRSGALHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYMGAQNSAFL 190

Query: 762  QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 941
            QQAS+ITGG++ KPQ + GLFQ+L  +FATDLHSR FL LP+P GVDFRASCFCHK  ID
Sbjct: 191  QQASYITGGVHHKPQHLDGLFQYLMTIFATDLHSRSFLHLPKPVGVDFRASCFCHKNTID 250

Query: 942  MGYVCSVCLSIFCEPLKKCSTCESDF 1019
            MGY+CSVCLSIFC+  KKCSTC S F
Sbjct: 251  MGYICSVCLSIFCKHHKKCSTCGSVF 276


>ref|XP_006472763.1| PREDICTED: general transcription factor IIH subunit 3-like isoform X2
            [Citrus sinensis]
          Length = 293

 Score =  302 bits (773), Expect = 3e-79
 Identities = 149/266 (56%), Positives = 186/266 (69%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNPFFW            +S L+F+QFL H  AFFN+IL L+QLN +VVI TG N+C+++
Sbjct: 22   TNPFFWS-----------SSSLSFSQFLTHVLAFFNAILTLNQLNQVVVIATGYNSCDYV 70

Query: 402  YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXXC 581
            YDS++   +  G     +    + QNLEEF+ KD +L K   E +              C
Sbjct: 71   YDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALC 130

Query: 582  YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 761
            YIQRV RS   HPQPR     GSPDGP+Q+V +MNAIFSAQRSM+PID+C +G+++SAFL
Sbjct: 131  YIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 185

Query: 762  QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 941
            QQAS+ITGG++ KPQ + GLFQ+L  +F TDLHSR FLQLP+P GVDFRASCFCHK  ID
Sbjct: 186  QQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTID 245

Query: 942  MGYVCSVCLSIFCEPLKKCSTCESDF 1019
            MGY+CSVCLSI+C+ LKKCSTC S F
Sbjct: 246  MGYICSVCLSIYCKHLKKCSTCGSVF 271


>gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus persica]
          Length = 295

 Score =  301 bits (771), Expect = 4e-79
 Identities = 155/266 (58%), Positives = 180/266 (67%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNPFFW            +S L F+ FL H   F NSILLL+QLN +VVI TG N+C +I
Sbjct: 22   TNPFFWS-----------SSSLPFSVFLSHVLTFLNSILLLNQLNQVVVIATGYNSCSYI 70

Query: 402  YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXXC 581
            YDS+T   +             + Q LEEFV +D +L K                    C
Sbjct: 71   YDSSTSTNQGSDNGRMPARCVNLLQKLEEFVIEDEQLIKEGLREGIASSLLSGSLSMALC 130

Query: 582  YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 761
            YIQRV RS   HPQPRILCLQGS DGP+Q+V +MNAIFSAQRS +PID+C +GS +SAFL
Sbjct: 131  YIQRVFRSGPLHPQPRILCLQGSSDGPEQYVAIMNAIFSAQRS-VPIDSCYMGSSNSAFL 189

Query: 762  QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 941
            QQAS+ITGG+YLKPQ   GLFQ+L+ VFATDLHSR FLQLP+  GVDFRASCFCHKK ID
Sbjct: 190  QQASYITGGVYLKPQQPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFRASCFCHKKTID 249

Query: 942  MGYVCSVCLSIFCEPLKKCSTCESDF 1019
            MGY+CSVCLSIFC+  KKCSTC S F
Sbjct: 250  MGYICSVCLSIFCKHHKKCSTCGSVF 275


>ref|XP_006828057.1| hypothetical protein AMTR_s00008p00264310, partial [Amborella
            trichopoda] gi|548832692|gb|ERM95473.1| hypothetical
            protein AMTR_s00008p00264310, partial [Amborella
            trichopoda]
          Length = 277

 Score =  300 bits (768), Expect = 1e-78
 Identities = 152/264 (57%), Positives = 185/264 (70%), Gaps = 2/264 (0%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNP+FWG                F+QFL     F NSILLL+QLN LVVI TG+N+C+++
Sbjct: 22   TNPYFWGAM---------NGAAAFSQFLNQVLPFLNSILLLNQLNQLVVIATGVNSCDYL 72

Query: 402  YDSTTKVKELKGFNEFMTP--STLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXX 575
            YDS+    E +  +    P  S  I Q LE+F+ KD +L  ++     +           
Sbjct: 73   YDSSRVGHESEKRSTKGIPGHSLEILQKLEDFIAKDQQLSNSDEAPGKICSLLSGSLSLA 132

Query: 576  XCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSA 755
             CYIQR++R+   HPQPRILCLQ SPDG +Q+V +MNAIFSAQRSM+PID+C+VGSE SA
Sbjct: 133  LCYIQRILRTGPVHPQPRILCLQASPDGSEQYVAIMNAIFSAQRSMVPIDSCVVGSEDSA 192

Query: 756  FLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKA 935
            FLQQAS+ITGG+Y KPQ + GLFQ L+MVFATDLHSRRFL+LP PTGVDFRASCFCHK+ 
Sbjct: 193  FLQQASYITGGVYQKPQHLDGLFQCLSMVFATDLHSRRFLKLPTPTGVDFRASCFCHKEP 252

Query: 936  IDMGYVCSVCLSIFCEPLKKCSTC 1007
            I MGYVCSVCLSIFC+   KCSTC
Sbjct: 253  IGMGYVCSVCLSIFCKYHTKCSTC 276


>ref|XP_004290858.1| PREDICTED: general transcription factor IIH subunit 3-like isoform 2
            [Fragaria vesca subsp. vesca]
          Length = 298

 Score =  296 bits (757), Expect = 2e-77
 Identities = 149/266 (56%), Positives = 179/266 (67%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNPFFW            +S L F+++L H   F NSILLL+QLN +VVI TG ++C +I
Sbjct: 22   TNPFFWS-----------SSSLPFSKYLSHVLTFLNSILLLNQLNQVVVIATGYSSCSYI 70

Query: 402  YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXXC 581
            YDS +   +           + + + LEEFV KD +L K  +                 C
Sbjct: 71   YDSASAPGQGSDQGRMPALCSHLLKKLEEFVAKDEQLLKEGSAEGIPSSLLSGSLSMALC 130

Query: 582  YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 761
            YIQ+V RS   HP PRILCLQGS DGP+Q+V +MNAIFSAQRSM+PID+C +GS +SAFL
Sbjct: 131  YIQKVFRSGPQHPHPRILCLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSCYMGSNNSAFL 190

Query: 762  QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 941
            QQAS+ITGG+YLKPQ   GL Q+L  VFATDLHSR FLQLP+  GVDFRASCFCHKK ID
Sbjct: 191  QQASYITGGVYLKPQQPDGLLQYLTTVFATDLHSRAFLQLPKSAGVDFRASCFCHKKTID 250

Query: 942  MGYVCSVCLSIFCEPLKKCSTCESDF 1019
             GY+CSVCLSIFC+  KKCSTC S F
Sbjct: 251  TGYICSVCLSIFCKHHKKCSTCGSVF 276


>ref|XP_004290857.1| PREDICTED: general transcription factor IIH subunit 3-like isoform 1
            [Fragaria vesca subsp. vesca]
          Length = 300

 Score =  296 bits (757), Expect = 2e-77
 Identities = 149/266 (56%), Positives = 179/266 (67%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNPFFW            +S L F+++L H   F NSILLL+QLN +VVI TG ++C +I
Sbjct: 22   TNPFFWS-----------SSSLPFSKYLSHVLTFLNSILLLNQLNQVVVIATGYSSCSYI 70

Query: 402  YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXXC 581
            YDS +   +           + + + LEEFV KD +L K  +                 C
Sbjct: 71   YDSASAPGQGSDQGRMPALCSHLLKKLEEFVAKDEQLLKEGSAEGIPSSLLSGSLSMALC 130

Query: 582  YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 761
            YIQ+V RS   HP PRILCLQGS DGP+Q+V +MNAIFSAQRSM+PID+C +GS +SAFL
Sbjct: 131  YIQKVFRSGPQHPHPRILCLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSCYMGSNNSAFL 190

Query: 762  QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 941
            QQAS+ITGG+YLKPQ   GL Q+L  VFATDLHSR FLQLP+  GVDFRASCFCHKK ID
Sbjct: 191  QQASYITGGVYLKPQQPDGLLQYLTTVFATDLHSRAFLQLPKSAGVDFRASCFCHKKTID 250

Query: 942  MGYVCSVCLSIFCEPLKKCSTCESDF 1019
             GY+CSVCLSIFC+  KKCSTC S F
Sbjct: 251  TGYICSVCLSIFCKHHKKCSTCGSVF 276


>ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group]
            gi|41053068|dbj|BAD08012.1| putative TFIIH basal
            transcription factor complex p34 subunit [Oryza sativa
            Japonica Group] gi|113535279|dbj|BAF07662.1| Os02g0125800
            [Oryza sativa Japonica Group]
            gi|215768495|dbj|BAH00724.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 289

 Score =  296 bits (757), Expect = 2e-77
 Identities = 149/270 (55%), Positives = 183/270 (67%), Gaps = 2/270 (0%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNP FW             + L FA F  H   + NS+LLL+ LNH+VVI  G+++C +I
Sbjct: 20   TNPLFWA-----------TAALPFADFFAHLIHYVNSLLLLNHLNHVVVIAAGLSSCTYI 68

Query: 402  YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETK--NMYXXXXXXXXXX 575
            +DS+       G  +        S+ ++EF+ +D     +N      N            
Sbjct: 69   FDSSDA--SASGAADVAATFAKASRKMDEFIAEDARATSSNGSVADGNAASLLSGALSLA 126

Query: 576  XCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSA 755
             CYIQRV RS   HPQPRILCLQGSPDGP+Q+V VMN+IFSAQRSM+PID+CIVG++ SA
Sbjct: 127  LCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCIVGTQDSA 186

Query: 756  FLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKA 935
            FLQQAS+ITGG+YLKPQ + GLFQ+LA VFATDLHSR FL+LP+  GVDFRASCFCHKK 
Sbjct: 187  FLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFRASCFCHKKT 246

Query: 936  IDMGYVCSVCLSIFCEPLKKCSTCESDFTK 1025
            IDMGYVCSVCLSIFC+  KKCSTC S+F +
Sbjct: 247  IDMGYVCSVCLSIFCKYHKKCSTCGSEFNR 276


>ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Capsella rubella]
            gi|482574167|gb|EOA38354.1| hypothetical protein
            CARUB_v10009867mg [Capsella rubella]
          Length = 301

 Score =  295 bits (756), Expect = 2e-77
 Identities = 152/271 (56%), Positives = 191/271 (70%), Gaps = 5/271 (1%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNPFFW             + +TF+QFL H  AF N++L L+QLN +VVI TG ++CE+I
Sbjct: 22   TNPFFWS-----------TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCEYI 70

Query: 402  YDS--TTKVKELKGFNEFMTP--STLISQNLEEFVKKDHELYKNN-TETKNMYXXXXXXX 566
            YDS  T+     +     M P  ++L+++ LE+FV KD EL +    E +          
Sbjct: 71   YDSSLTSNHGSFERDRTGMPPLFASLLNK-LEDFVTKDEELSREEGNEDRTPSCLLSGSL 129

Query: 567  XXXXCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSE 746
                CYIQRV RS + HPQPRILCLQGSPDGP+Q+V VMN+IFSAQR M+PID+C +G +
Sbjct: 130  SMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQ 189

Query: 747  HSAFLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCH 926
            +SAFLQQAS+ITGG++  P+ + GLFQ+L  +FATDLHSR F+QLP+P GVDFRASCFCH
Sbjct: 190  NSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCH 249

Query: 927  KKAIDMGYVCSVCLSIFCEPLKKCSTCESDF 1019
            KK IDMGY+CSVCLSIFCE  KKCSTC S F
Sbjct: 250  KKTIDMGYICSVCLSIFCEHHKKCSTCGSVF 280


>dbj|BAK06937.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 292

 Score =  294 bits (752), Expect = 7e-77
 Identities = 150/270 (55%), Positives = 184/270 (68%), Gaps = 2/270 (0%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNPFFW             + L FA FL H   F NS+LLL  LNH+V+I  G+++C ++
Sbjct: 22   TNPFFWA-----------GAALPFADFLSHLIHFVNSLLLLSNLNHVVIIAAGVSSCAYV 70

Query: 402  YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKD-HELYKNNTETKN-MYXXXXXXXXXX 575
            +DS        G  +        S+ LEE +K+D  E   N T                 
Sbjct: 71   FDSGNA--GASGTADVAETLGKASRKLEELIKQDARETVGNGTVADGGAASLFSGALSLA 128

Query: 576  XCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSA 755
             CYIQR+ RS + HPQPRILC+QGSPDGP+Q+V VMN+IFSAQRSM+PID CIVG++ SA
Sbjct: 129  LCYIQRIFRSGSRHPQPRILCVQGSPDGPEQYVAVMNSIFSAQRSMVPIDTCIVGTQDSA 188

Query: 756  FLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKA 935
            FLQQAS+ITGG+Y+KPQ + GLFQ+LA VFATDLHSR FL+LP+  GVDFRASCFCHKK 
Sbjct: 189  FLQQASYITGGVYMKPQELSGLFQYLAAVFATDLHSRTFLRLPKTLGVDFRASCFCHKKT 248

Query: 936  IDMGYVCSVCLSIFCEPLKKCSTCESDFTK 1025
            IDMGYVCSVCLSIFC+  KKCSTC S+F++
Sbjct: 249  IDMGYVCSVCLSIFCKYHKKCSTCGSEFSR 278


>ref|XP_004952041.1| PREDICTED: general transcription factor IIH subunit 3-like isoform X1
            [Setaria italica]
          Length = 291

 Score =  293 bits (750), Expect = 1e-76
 Identities = 150/270 (55%), Positives = 185/270 (68%), Gaps = 2/270 (0%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNPFFW            A+ L FA F  +   F NS+LLL+ LN +VVI  G+++C +I
Sbjct: 22   TNPFFWA-----------AAALPFADFFANLVHFVNSLLLLNHLNRVVVIAAGVSSCSYI 70

Query: 402  YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTE--TKNMYXXXXXXXXXX 575
            +DS+       G           S+ +EEF+ +D      N    + N            
Sbjct: 71   FDSSDA--SAAGGVGVTATFDKASRKVEEFIAQDARATAGNGSVVSGNAASLLSGALSLA 128

Query: 576  XCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSA 755
             CYIQR+ RS   HPQPRILCLQGSPDGP+Q+V VMN+IFSAQRSM+PID+CIVG++ SA
Sbjct: 129  LCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCIVGTQDSA 188

Query: 756  FLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKA 935
            FLQQAS+ITGG+YLKPQ + GLFQ+LA+VFATDLHSR FL+LP+  GVDFRASCFCHKK 
Sbjct: 189  FLQQASYITGGVYLKPQELNGLFQYLAVVFATDLHSRTFLRLPKTLGVDFRASCFCHKKT 248

Query: 936  IDMGYVCSVCLSIFCEPLKKCSTCESDFTK 1025
            IDMGYVCSVCLSIFC+  KKCSTC S+F++
Sbjct: 249  IDMGYVCSVCLSIFCKNQKKCSTCGSEFSR 278


>ref|NP_001131186.1| hypothetical protein [Zea mays] gi|194688300|gb|ACF78234.1| unknown
            [Zea mays] gi|194690816|gb|ACF79492.1| unknown [Zea mays]
            gi|224028537|gb|ACN33344.1| unknown [Zea mays]
            gi|413926714|gb|AFW66646.1| hypothetical protein
            ZEAMMB73_940692 [Zea mays]
          Length = 291

 Score =  293 bits (750), Expect = 1e-76
 Identities = 150/270 (55%), Positives = 183/270 (67%), Gaps = 2/270 (0%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNPFFW            A+ L FA F  H   F NS+LLL+ LN +VVI  G+++C +I
Sbjct: 22   TNPFFWA-----------AAALPFADFFAHLIHFVNSLLLLNHLNRVVVIAAGVSSCAYI 70

Query: 402  YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNN--TETKNMYXXXXXXXXXX 575
             DS+       G           S+  EEF+ +D      N    + N            
Sbjct: 71   LDSSDASPS--GGVAVSDTFDKASRKAEEFIAQDARATAGNGSVASANAASLLSGALSIS 128

Query: 576  XCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSA 755
             CYIQR+ RS + HPQPRILCLQGSPDGP+Q+V VMN+IFSAQRSM+PID+CIVG++ SA
Sbjct: 129  LCYIQRIFRSGSRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCIVGTQDSA 188

Query: 756  FLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKA 935
            FLQQAS+ITGG+YLKPQ + GLFQ+LA VFATDLHSR FL+LP+  GVDFRASCFCHKK 
Sbjct: 189  FLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRAFLRLPKTLGVDFRASCFCHKKT 248

Query: 936  IDMGYVCSVCLSIFCEPLKKCSTCESDFTK 1025
            IDMGYVCS+CLSIFC+  KKCSTC S+F++
Sbjct: 249  IDMGYVCSICLSIFCKNQKKCSTCGSEFSR 278


>ref|NP_564050.1| basal transcription factor complex subunit-related protein
            [Arabidopsis thaliana] gi|21537277|gb|AAM61618.1| unknown
            [Arabidopsis thaliana] gi|92856638|gb|ABE77412.1|
            At1g18340 [Arabidopsis thaliana]
            gi|332191584|gb|AEE29705.1| basal transcription factor
            complex subunit-related protein [Arabidopsis thaliana]
          Length = 301

 Score =  292 bits (748), Expect = 2e-76
 Identities = 151/271 (55%), Positives = 187/271 (69%), Gaps = 5/271 (1%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNP FW             + +TF+QFL H  AF N++L L+QLN +VVI TG ++C++I
Sbjct: 22   TNPLFWS-----------TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYI 70

Query: 402  YDSTTKVK----ELKGFNEFMTPSTLISQNLEEFVKKDHELYKNN-TETKNMYXXXXXXX 566
            YDS+        E  G        +L+ + LEEFV KD EL K   +E +          
Sbjct: 71   YDSSLTSNHGNFESNGTGMPAIFGSLLKK-LEEFVTKDEELSKEEVSEDRIPSCLLSGSL 129

Query: 567  XXXXCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSE 746
                CYIQRV RS + HPQPRILCLQGSPDGP+Q+V VMN+IFSAQR M+PID+C +G +
Sbjct: 130  SMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQ 189

Query: 747  HSAFLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCH 926
            +SAFLQQAS+ITGG++  P+ + GLFQ+L  +FATDLHSR F+QLP+P GVDFRASCFCH
Sbjct: 190  NSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCH 249

Query: 927  KKAIDMGYVCSVCLSIFCEPLKKCSTCESDF 1019
            KK IDMGY+CSVCLSIFCE  KKCSTC S F
Sbjct: 250  KKTIDMGYICSVCLSIFCEHHKKCSTCGSVF 280


>ref|XP_003573866.1| PREDICTED: general transcription factor IIH subunit 3-like
            [Brachypodium distachyon]
          Length = 290

 Score =  292 bits (747), Expect = 3e-76
 Identities = 150/270 (55%), Positives = 182/270 (67%), Gaps = 2/270 (0%)
 Frame = +3

Query: 222  TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 401
            TNPFFW             + L FA F  H   F NS+LLL+ LN +VVI  G+++C ++
Sbjct: 22   TNPFFWA-----------GAALPFADFFGHLIHFVNSLLLLNHLNQVVVIAAGVSSCAYV 70

Query: 402  YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKN--MYXXXXXXXXXX 575
            +DS        G  +        S+ +EEFVK+D      N                   
Sbjct: 71   FDSGNAAAS--GSPDVAATFAKASRKVEEFVKQDARDTAGNGTVAGGGAASLFSGALSLA 128

Query: 576  XCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSA 755
             CYIQRV RS   HPQPRILCLQGSPDGP+Q+V VMN+IFSAQRSM+PID+CIVG++ SA
Sbjct: 129  LCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCIVGTQDSA 188

Query: 756  FLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKA 935
            FLQQAS+ITGG+YLKPQ + GLFQ+LA VFA+DLHSR FL+LP+  GVDFRASCFCHKK 
Sbjct: 189  FLQQASYITGGVYLKPQELSGLFQYLAAVFASDLHSRAFLRLPKTLGVDFRASCFCHKKT 248

Query: 936  IDMGYVCSVCLSIFCEPLKKCSTCESDFTK 1025
            IDMGYVCSVCLSIFC+  KKCSTC S+F++
Sbjct: 249  IDMGYVCSVCLSIFCKYHKKCSTCGSEFSR 278