BLASTX nr result
ID: Ephedra27_contig00018059
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00018059
(1059 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 180 7e-43
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 165 3e-38
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 165 3e-38
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 164 7e-38
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 162 2e-37
dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana] 162 2e-37
ref|XP_006645606.1| PREDICTED: probable RNA-dependent RNA polyme... 162 3e-37
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 162 3e-37
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 162 3e-37
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 161 5e-37
ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [S... 160 8e-37
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 159 2e-36
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 158 3e-36
emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera] 158 3e-36
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 157 7e-36
ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group] g... 156 1e-35
sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 156 1e-35
gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japo... 156 1e-35
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe... 155 3e-35
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 153 1e-34
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 180 bits (457), Expect = 7e-43
Identities = 110/291 (37%), Positives = 156/291 (53%), Gaps = 4/291 (1%)
Frame = +1
Query: 7 VLKDYKLQPSWXXXXXXXXXXXXXXTDFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWM 186
+L +K P W ++ P++LE LFD FL RF PS AA+SW+
Sbjct: 709 LLHYFKAGPPWERSSSEKPPPQRKPIEYSPDELETELFDLFLESRFHPSIAKCAAADSWL 768
Query: 187 VYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASKTGSKIELPNELRAQKMPHCMN 366
VYMDRLLT ++E L +KML L D+YY+A+DA K+G K+E+P +L+ ++ PH M
Sbjct: 769 VYMDRLLTLGDECAEEKGCLHQKMLKLADLYYEAVDAPKSGKKVEVPKDLKPERYPHFME 828
Query: 367 DDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKTGDIVMLPDFLEETDKKTL--W 540
Y STS+LG++YDL + D E DI +LP FLEE + + W
Sbjct: 829 RTYQ------YTSTSILGQIYDLVASAQMDVPCE------DIELLPCFLEEVEPSGMEKW 876
Query: 541 MKHYEIYRSEMSNAMDSPD--SSRANDIXXXXXXXXXXADCLDESSKNRSDIYDEARAIY 714
Y YR EM+ A+ S D S A+++ A +E ++ R +I+ EA IY
Sbjct: 877 KGLYAQYRDEMNKALSSTDQKKSNADEVIQNYKKILYGAQEYEERTRPREEIFREACEIY 936
Query: 715 QVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHRKNPILISASKLYSIL 867
+ Y YA+ D+ KC FAW VAG ALCE++ K +KN I +S L +L
Sbjct: 937 AISYFYAKEKSDIAKCGFAWKVAGCALCELHALKQKKNSITCLSSVLQELL 987
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 165 bits (417), Expect = 3e-38
Identities = 102/276 (36%), Positives = 145/276 (52%), Gaps = 6/276 (2%)
Frame = +1
Query: 7 VLKDYKLQPSWXXXXXXXXXXXXXXTDFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWM 186
+L+ ++ W TDF P++LE LF FLT RF S+ G+AA++W+
Sbjct: 647 LLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWL 706
Query: 187 VYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASKTGSKIELPNELRAQKMPHCMN 366
V+MDRLLT S E + L KML L DIYY ALDA K+G K+ + EL+A+K PH M
Sbjct: 707 VFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMG 766
Query: 367 DDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKTGDIVMLPDF-LEETDKKTL-- 537
+S Y STS+LG++YD + + T +I LP F ++ + L
Sbjct: 767 RESS------YHSTSILGQIYDA-----VESFQPENQSTKEIWRLPLFNIDAVPQACLRS 815
Query: 538 WMKHYEIYRSEMSNAMDSPDSSR---ANDIXXXXXXXXXXADCLDESSKNRSDIYDEARA 708
W Y+ YRSEM+ A+ ++ A ++ A +ES +N DI+DEA A
Sbjct: 816 WKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALA 875
Query: 709 IYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEK 816
IY V Y++ + V C F W VAG ALC++Y K
Sbjct: 876 IYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVK 911
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 165 bits (417), Expect = 3e-38
Identities = 102/276 (36%), Positives = 145/276 (52%), Gaps = 6/276 (2%)
Frame = +1
Query: 7 VLKDYKLQPSWXXXXXXXXXXXXXXTDFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWM 186
+L+ ++ W TDF P++LE LF FLT RF S+ G+AA++W+
Sbjct: 661 LLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWL 720
Query: 187 VYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASKTGSKIELPNELRAQKMPHCMN 366
V+MDRLLT S E + L KML L DIYY ALDA K+G K+ + EL+A+K PH M
Sbjct: 721 VFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMG 780
Query: 367 DDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKTGDIVMLPDF-LEETDKKTL-- 537
+S Y STS+LG++YD + + T +I LP F ++ + L
Sbjct: 781 RESS------YHSTSILGQIYDA-----VESFQPENQSTKEIWRLPLFNIDAVPQACLRS 829
Query: 538 WMKHYEIYRSEMSNAMDSPDSSR---ANDIXXXXXXXXXXADCLDESSKNRSDIYDEARA 708
W Y+ YRSEM+ A+ ++ A ++ A +ES +N DI+DEA A
Sbjct: 830 WKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALA 889
Query: 709 IYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEK 816
IY V Y++ + V C F W VAG ALC++Y K
Sbjct: 890 IYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVK 925
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 164 bits (414), Expect = 7e-38
Identities = 96/257 (37%), Positives = 138/257 (53%)
Frame = +1
Query: 85 DFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWMVYMDRLLTPIVAKSKEADLLTEKMLL 264
DF PE+LE+ LFD FL RF SN G+AA+SW+ MDR LT +++E + KML
Sbjct: 735 DFSPEELEEELFDMFLKARFHSSNVIGMAADSWLTIMDRFLTLGDERAEEKAEMKRKMLS 794
Query: 265 LVDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLD 444
L+DIYY ALDA+K G K+ LP+ L+ PH M D + STS+LG +YD +
Sbjct: 795 LIDIYYDALDAAKKGVKVSLPDALKPDIFPHYMERDKK------FKSTSILGIIYDF-VQ 847
Query: 445 SNSDDIDETAKKTGDIVMLPDFLEETDKKTLWMKHYEIYRSEMSNAMDSPDSSRANDIXX 624
S + + + + + D K Y+ YR+EM A+ + D + A+++
Sbjct: 848 SQTAEEHTPSSEISKLQCFEDEPVSEFHKEKCRPWYDNYRAEMIQALSNKDDT-ASEVIE 906
Query: 625 XXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEI 804
A ++S K+ ++Y +A A+Y +VYDYA + VRKC FAW VAG LC
Sbjct: 907 KYKQEFYGAAGFEDSKKSLEELYPQALALYNIVYDYAIEMKSVRKCGFAWKVAGPVLCRF 966
Query: 805 YFEKHRKNPILISASKL 855
Y +K +L S S L
Sbjct: 967 YLKKTGGKALLCSLSML 983
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 162 bits (411), Expect = 2e-37
Identities = 97/257 (37%), Positives = 137/257 (53%), Gaps = 6/257 (2%)
Frame = +1
Query: 94 PEDLEQYLFDQFLTCRFSPSNTTGLAANSWMVYMDRLLTPIVAKSKEADLLTEKMLLLVD 273
PE+LE+ LF+ FLT F SN G+AA+SW+ MDR L +++E + +KML L+D
Sbjct: 726 PEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELID 785
Query: 274 IYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNS 453
IYY ALDA K G K+ LPN+L+ PH M D + STS+LG ++D +
Sbjct: 786 IYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK------FQSTSILGLIFDFVKSQTT 839
Query: 454 DDIDETAKKTGDIVMLPDFLEE------TDKKTLWMKHYEIYRSEMSNAMDSPDSSRAND 615
E + +I LP F +E K LW Y+ YR+EM+ AM + AN+
Sbjct: 840 ----EEPSPSSEISKLPCFEDEPVSEFHMQKCRLW---YDNYRTEMTQAMKTDKDESANE 892
Query: 616 IXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEAL 795
+ A ++S K+ ++Y +A A+Y++VYDYA G V KCRF W VAG L
Sbjct: 893 VIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDYAIHAG-VSKCRFVWKVAGPVL 951
Query: 796 CEIYFEKHRKNPILISA 846
C Y K + L+ A
Sbjct: 952 CRFYLNKKMQEKCLVCA 968
>dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
Length = 339
Score = 162 bits (411), Expect = 2e-37
Identities = 97/257 (37%), Positives = 137/257 (53%), Gaps = 6/257 (2%)
Frame = +1
Query: 94 PEDLEQYLFDQFLTCRFSPSNTTGLAANSWMVYMDRLLTPIVAKSKEADLLTEKMLLLVD 273
PE+LE+ LF+ FLT F SN G+AA+SW+ MDR L +++E + +KML L+D
Sbjct: 88 PEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELID 147
Query: 274 IYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNS 453
IYY ALDA K G K+ LPN+L+ PH M D + STS+LG ++D +
Sbjct: 148 IYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK------FQSTSILGLIFDFVKSQTT 201
Query: 454 DDIDETAKKTGDIVMLPDFLEE------TDKKTLWMKHYEIYRSEMSNAMDSPDSSRAND 615
E + +I LP F +E K LW Y+ YR+EM+ AM + AN+
Sbjct: 202 ----EEPSPSSEISKLPCFEDEPVSEFHMQKCRLW---YDNYRTEMTQAMKTDKDESANE 254
Query: 616 IXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEAL 795
+ A ++S K+ ++Y +A A+Y++VYDYA G V KCRF W VAG L
Sbjct: 255 VIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDYAIHAG-VSKCRFVWKVAGPVL 313
Query: 796 CEIYFEKHRKNPILISA 846
C Y K + L+ A
Sbjct: 314 CRFYLNKKMQEKCLVCA 330
>ref|XP_006645606.1| PREDICTED: probable RNA-dependent RNA polymerase 4-like [Oryza
brachyantha]
Length = 1004
Score = 162 bits (409), Expect = 3e-37
Identities = 101/268 (37%), Positives = 147/268 (54%), Gaps = 9/268 (3%)
Frame = +1
Query: 85 DFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWMVYMDRLLTPIVAKSKEADLLTEKMLL 264
DF +LE+ LF +FL RF+PS A+N+W+VYMDRLLT V +S E +L+ EKML
Sbjct: 737 DFNESELERLLFHEFLKARFAPSYALATASNNWLVYMDRLLTDPVDES-EKELIKEKMLK 795
Query: 265 LVDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLD 444
LVD+YY ALDA K+G K+ +P++L ++ PH M S Y S+S+LG+LYD D
Sbjct: 796 LVDLYYVALDAPKSGKKVNIPSDLMVKQYPHFMGRSSS------YHSSSILGKLYDKADD 849
Query: 445 SNSDDIDETAKKTGDIVMLPDFLEETDK---KTLWMKHYEIYRSEMS-----NAMDSPDS 600
+N D + I +LP F E K LW + Y Y S+ S A+D +
Sbjct: 850 ANLLRFDNV--QPIGISLLPCFTERVAPPTIKNLWQRRYNEYLSDSSKLLNDKAVDKEEK 907
Query: 601 S-RANDIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWF 777
+ + ++ A +E+ +N D++ +A AIYQ+VY+ A+ +C FAW
Sbjct: 908 NMKFEELYKKYKHMLYDASEFEETPRNFGDVFTDACAIYQIVYEKARRENAAARCCFAWN 967
Query: 778 VAGEALCEIYFEKHRKNPILISASKLYS 861
VAG ALC Y K+ + ++ S L S
Sbjct: 968 VAGRALCHYYALKNEGDTVVCSLPLLRS 995
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 162 bits (409), Expect = 3e-37
Identities = 110/293 (37%), Positives = 162/293 (55%), Gaps = 6/293 (2%)
Frame = +1
Query: 7 VLKDYKLQPSWXXXXXXXXXXXXXXTDFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWM 186
+L+ +K W ++F E+LE LF FL RF PS+T G+AA+SW+
Sbjct: 594 LLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWL 653
Query: 187 VYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASKTGS-KIELPNELRAQKMPHCM 363
MDRLLT ++E + E + LL+DIYY ALDA K G +IE+P L+A+ PH M
Sbjct: 654 AMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFM 713
Query: 364 NDDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKTGDIVMLPDFLEETDKKTL-- 537
N Y STS+LG++YD K+ + +D+D + D+ LP F +E + L
Sbjct: 714 GK----NEKKTYRSTSILGKIYD-KVKA-YEDMD---LSSNDVWKLPCFDDEVHELYLVK 764
Query: 538 WMKHYEIYRSEMSNAMDSPDSS--RANDIXXXXXXXXXXADCLDESSKNRSDIYDEARAI 711
W + Y YR EM NA+ + + S +AN++ A + S + +I++EA A+
Sbjct: 765 WKELYGQYRKEMRNALKAGEESNDKANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMAL 824
Query: 712 YQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHR-KNPILISASKLYSIL 867
YQV Y++A+S G V C FAW VAG ALC +Y K++ + P++ S S L IL
Sbjct: 825 YQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQGERPMICSPSALKGIL 877
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 162 bits (409), Expect = 3e-37
Identities = 110/293 (37%), Positives = 162/293 (55%), Gaps = 6/293 (2%)
Frame = +1
Query: 7 VLKDYKLQPSWXXXXXXXXXXXXXXTDFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWM 186
+L+ +K W ++F E+LE LF FL RF PS+T G+AA+SW+
Sbjct: 616 LLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWL 675
Query: 187 VYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASKTGS-KIELPNELRAQKMPHCM 363
MDRLLT ++E + E + LL+DIYY ALDA K G +IE+P L+A+ PH M
Sbjct: 676 AMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFM 735
Query: 364 NDDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKTGDIVMLPDFLEETDKKTL-- 537
N Y STS+LG++YD K+ + +D+D + D+ LP F +E + L
Sbjct: 736 GK----NEKKTYRSTSILGKIYD-KVKA-YEDMD---LSSNDVWKLPCFDDEVHELYLVK 786
Query: 538 WMKHYEIYRSEMSNAMDSPDSS--RANDIXXXXXXXXXXADCLDESSKNRSDIYDEARAI 711
W + Y YR EM NA+ + + S +AN++ A + S + +I++EA A+
Sbjct: 787 WKELYGQYRKEMRNALKAGEESNDKANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMAL 846
Query: 712 YQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHR-KNPILISASKLYSIL 867
YQV Y++A+S G V C FAW VAG ALC +Y K++ + P++ S S L IL
Sbjct: 847 YQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQGERPMICSPSALKGIL 899
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 161 bits (407), Expect = 5e-37
Identities = 98/269 (36%), Positives = 146/269 (54%), Gaps = 7/269 (2%)
Frame = +1
Query: 82 TDFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWMVYMDRLLTPIVAKSKEADLLTEKML 261
+D PEDLE LF FLT RF PS AA++W+ +MD LT + E + + EK+L
Sbjct: 1148 SDHSPEDLEDVLFRSFLTTRFEPSFAMSEAADNWLAWMDHFLTLGDSNIHEKNNVKEKIL 1207
Query: 262 LLVDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKL 441
LVD+YY ALDA+K G K+++P EL+ PH M + Y STS+LG +Y+
Sbjct: 1208 QLVDLYYTALDAAKKGVKVDVPKELKVSCFPHYMGKNRS------YPSTSILGSIYNRVD 1261
Query: 442 DSNSDDIDETAKKTGDIVMLPDFLE-ETDKKTL--WMKHYEIYRSEMSNAMDSPDSSRAN 612
+ ++D + ++ LP F E E L W + + YR EM++A+D D N
Sbjct: 1262 EHQTED-----RSLKEVEKLPAFDENEVPDACLDKWAELHRQYRKEMASALDDDDKQSKN 1316
Query: 613 D----IXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFV 780
+ A+ +ES + +IY+EA AIY V YD+A+ +G+V+ C FAW V
Sbjct: 1317 QSADVVIRKYRKILYEANDFEESRRPIEEIYNEAHAIYHVCYDHAKRVGNVKVCSFAWRV 1376
Query: 781 AGEALCEIYFEKHRKNPILISASKLYSIL 867
AG+ALC+++ + + I +S L IL
Sbjct: 1377 AGKALCQLHARNNNERFCTIVSSVLMEIL 1405
>ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
gi|241926977|gb|EES00122.1| hypothetical protein
SORBIDRAFT_03g002800 [Sorghum bicolor]
Length = 1127
Score = 160 bits (405), Expect = 8e-37
Identities = 107/264 (40%), Positives = 141/264 (53%), Gaps = 7/264 (2%)
Frame = +1
Query: 85 DFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWMVYMDRLLTPIVAKSKEADLLTEKMLL 264
D+ LE LF +FL RF+PS G A+N W+ MDRLLT V KS E + +KML
Sbjct: 865 DYTGPKLESLLFHEFLRARFTPSYVLGAASNCWLALMDRLLTGGVPKS-ERQAIKKKMLD 923
Query: 265 LVDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLD 444
LVDIYY ALDA K G+KI +P EL+ +K PH M D + Y STS+LG++YD +
Sbjct: 924 LVDIYYLALDAPKEGNKITVPGELKVKKYPHFMERDEKKS----YTSTSVLGKIYDEVML 979
Query: 445 SNSDDIDETAKKTGDIVMLPDFLE---ETDKKTLWMKHYEIYRSEMSNAMDSPDSSRAND 615
S+ ID K IV L F E D K W Y Y E ++ D + N+
Sbjct: 980 KESE-IDPEIK----IVPLSCFTEVKVSEDYKGRWRSLYYQYLRESTDLCKLEDKAEKNN 1034
Query: 616 ----IXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVA 783
+ A+ ++S + + D+ +EA A+YQVVY+YA S D+ KC FAW VA
Sbjct: 1035 NYRQLYQEYKRKLYEAEEFEQSPREQLDLLNEACAVYQVVYEYAMSRNDIAKCGFAWKVA 1094
Query: 784 GEALCEIYFEKHRKNPILISASKL 855
G ALC +Y K + L S S L
Sbjct: 1095 GRALCRLYTLKRGGDTALCSFSVL 1118
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 159 bits (401), Expect = 2e-36
Identities = 97/257 (37%), Positives = 135/257 (52%), Gaps = 6/257 (2%)
Frame = +1
Query: 94 PEDLEQYLFDQFLTCRFSPSNTTGLAANSWMVYMDRLLTPIVAKSKEADLLTEKMLLLVD 273
PE+LE+ LF+ FL F SN G+AA+SW+ MDRLL +++E + +KML L+D
Sbjct: 730 PEELEEELFEMFLKAGFHASNVIGIAADSWLTIMDRLLILGDERAEEKAEMKKKMLKLID 789
Query: 274 IYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNS 453
IYY ALDA K G K+ LPNELR PH M + + STS+LG +YD +
Sbjct: 790 IYYDALDAPKKGDKVYLPNELRPDIFPHYMEREKK------FKSTSILGLIYDFVKSQTT 843
Query: 454 DDIDETAKKTGDIVMLPDFLEE------TDKKTLWMKHYEIYRSEMSNAMDSPDSSRAND 615
E + +I LP F +E +K W Y+ YRSEM+ AM + AN+
Sbjct: 844 ----EEPTPSSEISKLPCFEDEPVSEFHMEKCRRW---YDNYRSEMTQAMKTDKDESANE 896
Query: 616 IXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEAL 795
+ A ++S K+ ++Y +A +Y++VYDYA G V KC F W VAG L
Sbjct: 897 VIQRYKQEFYGAAGFEDSKKSLEELYPQALTLYKIVYDYAIHAG-VSKCGFVWKVAGPVL 955
Query: 796 CEIYFEKHRKNPILISA 846
C Y K + L+ A
Sbjct: 956 CRFYLMKKMQEKSLVCA 972
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 158 bits (400), Expect = 3e-36
Identities = 99/263 (37%), Positives = 139/263 (52%), Gaps = 4/263 (1%)
Frame = +1
Query: 88 FFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWMVYMDRLLTPIVAKSKEADLLTEKMLLL 267
F PE+LE+ LF+ FL F SN G+AA+SW+ MDR L + E + +KML L
Sbjct: 731 FSPEELEEELFEMFLKAGFHASNVIGMAADSWLTIMDRFLILGDESADEKAEMKQKMLEL 790
Query: 268 VDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDS 447
+DIYY ALDA K G+K+ LPNELR PH M D + STS+LG +YD
Sbjct: 791 IDIYYDALDAPKKGAKVYLPNELRPDIFPHYMERDKK------FKSTSILGLIYDFVQSQ 844
Query: 448 NSDDIDETAKKTGDIVMLPDFLEETDKKTLWMKH----YEIYRSEMSNAMDSPDSSRAND 615
+ + +I LP F E+ MK Y+ Y+ EM++AM++ D+S N+
Sbjct: 845 TT----KQPSPPSEINKLPCF-EDEPVSEFHMKECRRWYDEYKDEMTHAMNT-DASNKNE 898
Query: 616 IXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEAL 795
I A +ES K+ ++Y +A A+Y +VYD+A G V +C F W VAG L
Sbjct: 899 IIERCKEDFYGAASFEESKKSLEELYPQALALYNIVYDHATHAG-VSRCGFVWKVAGPVL 957
Query: 796 CEIYFEKHRKNPILISASKLYSI 864
C Y +K + ++ S S L I
Sbjct: 958 CRFYLKKRHEKTLVSSPSVLKEI 980
>emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
Length = 1202
Score = 158 bits (400), Expect = 3e-36
Identities = 98/248 (39%), Positives = 134/248 (54%), Gaps = 3/248 (1%)
Frame = +1
Query: 82 TDFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWMVYMDRLLTPIVAKSKEADLLTEKML 261
TDF P++LE LF FLT RF S+ G+AA++W+V+MDRLLT S E + L KML
Sbjct: 955 TDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKML 1014
Query: 262 LLVDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKL 441
L DIYY ALDA K+G K+ + EL+A+K PH M +S Y STS+LG++YD
Sbjct: 1015 ELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESS------YHSTSILGQIYDA-- 1066
Query: 442 DSNSDDIDETAKKTGDIVMLPDFLEETDKKTLWMKHYEIYRSEMSNAMDSPDSSR---AN 612
+ + T D V P + W Y+ YRSEM+ A+ ++ A
Sbjct: 1067 ---VESFQPENQSTKDAV--PQACLRS-----WKDRYDQYRSEMAAALQHGGETKDEYAA 1116
Query: 613 DIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEA 792
++ A +ES + DI+DEA AIY V Y++A + V C F W VAG A
Sbjct: 1117 EVINKYKQILYGAAEFEESPRKLEDIFDEALAIYHVTYEFAINGARVSYCNFPWRVAGRA 1176
Query: 793 LCEIYFEK 816
LC++Y K
Sbjct: 1177 LCKLYTVK 1184
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 157 bits (397), Expect = 7e-36
Identities = 105/291 (36%), Positives = 151/291 (51%), Gaps = 10/291 (3%)
Frame = +1
Query: 1 KTVLKDYKLQPSWXXXXXXXXXXXXXXTDFFPEDLEQYLFDQFLTCRFSPSNTTGLAANS 180
+ ++ Y W ++F ++LE LF QFL + +N + LAA+S
Sbjct: 728 RKLVDSYTTSRPWIRMHSTPNAVSKKPSEFSADELEYELFRQFLEAKSKGANMS-LAADS 786
Query: 181 WMVYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASKTGSKIELPNELRAQKMPHC 360
W+ +MDRLLT + L KML L+DIYY ALDA K+G K+ +P+ L+A K PH
Sbjct: 787 WLAFMDRLLTLRDDNVDDMHSLKGKMLHLIDIYYDALDAPKSGKKVSIPHYLKANKFPHY 846
Query: 361 MNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDD---IDETAKKTGDIVMLPDFLEETDKK 531
M + C+ Y STS+LG++YD +DS D+ I E +K LP F E ++
Sbjct: 847 MEKGNSCS----YHSTSILGQIYD-HVDSYPDEDLCITEISK-------LPCFEVEIPQR 894
Query: 532 --TLWMKHYEIYRSEMSNAMDSPDSSR---ANDIXXXXXXXXXXADCLDESSKNRSDIYD 696
TLW YE Y+ +M+ AM+ R N++ A +++ + DI+D
Sbjct: 895 CMTLWRGRYEEYKKDMTRAMNFDCELRITSCNEVIKKYKMLLYGAVEFEQTVRKTEDIFD 954
Query: 697 EARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIY--FEKHRKNPILIS 843
EA AIY V YD A+ + KC FAW VAG ALC I+ + K + PIL S
Sbjct: 955 EALAIYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMYRKEKDLPILPS 1005
>ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|56201772|dbj|BAD73222.1| RNA-dependent RNA polymerase
-like [Oryza sativa Japonica Group]
gi|56201879|dbj|BAD73329.1| RNA-dependent RNA polymerase
-like [Oryza sativa Japonica Group]
gi|113531835|dbj|BAF04218.1| Os01g0198000 [Oryza sativa
Japonica Group] gi|215693837|dbj|BAG89036.1| unnamed
protein product [Oryza sativa Japonica Group]
Length = 582
Score = 156 bits (395), Expect = 1e-35
Identities = 100/294 (34%), Positives = 148/294 (50%), Gaps = 11/294 (3%)
Frame = +1
Query: 7 VLKDYKLQPSWXXXXXXXXXXXXXXTDFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWM 186
+L+ +K W DF +LE+ LF +FL RF+PS AA +W+
Sbjct: 290 LLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWL 349
Query: 187 VYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASKTGSKIELPNELRAQKMPHCMN 366
VYMDRLLT + +S E L+ +KML LVD+YY ALDA K G+K+ +P +L ++ PH M+
Sbjct: 350 VYMDRLLTVSLDES-EKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMD 408
Query: 367 DDSDCNLDDYYMSTSLLGELYDLKLDSN---SDDIDETAKKTGDIVMLPDFLEETDK--- 528
Y S+S+LG++YD D SD++ T+ I LP F E
Sbjct: 409 RSPS------YHSSSILGKIYDKAGDPKPLRSDNVQPTS-----ISSLPCFAERDVPPAI 457
Query: 529 KTLWMKHYEIYRSEMS-----NAMDSPDSSRANDIXXXXXXXXXXADCLDESSKNRSDIY 693
K LW Y Y ++ S A + + ++ A +E+ ++ D++
Sbjct: 458 KQLWQHRYNEYLADSSLLYAEEADEEEKKIKFQELYEKYKHLLYGASEFEETPRDLDDVF 517
Query: 694 DEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHRKNPILISASKL 855
EA AIYQ+ Y+ A+S +V +C FAW VAG ALC Y K+ N ++ S L
Sbjct: 518 SEACAIYQIAYEKARSANNVARCGFAWKVAGRALCHFYTVKNEGNAVVCSLQLL 571
>sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 4; Short=OsRDR4
Length = 1183
Score = 156 bits (395), Expect = 1e-35
Identities = 100/294 (34%), Positives = 148/294 (50%), Gaps = 11/294 (3%)
Frame = +1
Query: 7 VLKDYKLQPSWXXXXXXXXXXXXXXTDFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWM 186
+L+ +K W DF +LE+ LF +FL RF+PS AA +W+
Sbjct: 891 LLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWL 950
Query: 187 VYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASKTGSKIELPNELRAQKMPHCMN 366
VYMDRLLT + +S E L+ +KML LVD+YY ALDA K G+K+ +P +L ++ PH M+
Sbjct: 951 VYMDRLLTVSLDES-EKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMD 1009
Query: 367 DDSDCNLDDYYMSTSLLGELYDLKLDSN---SDDIDETAKKTGDIVMLPDFLEETDK--- 528
Y S+S+LG++YD D SD++ T+ I LP F E
Sbjct: 1010 RSPS------YHSSSILGKIYDKAGDPKPLRSDNVQPTS-----ISSLPCFAERDVPPAI 1058
Query: 529 KTLWMKHYEIYRSEMS-----NAMDSPDSSRANDIXXXXXXXXXXADCLDESSKNRSDIY 693
K LW Y Y ++ S A + + ++ A +E+ ++ D++
Sbjct: 1059 KQLWQHRYNEYLADSSLLYAEEADEEEKKIKFQELYEKYKHLLYGASEFEETPRDLDDVF 1118
Query: 694 DEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHRKNPILISASKL 855
EA AIYQ+ Y+ A+S +V +C FAW VAG ALC Y K+ N ++ S L
Sbjct: 1119 SEACAIYQIAYEKARSANNVARCGFAWKVAGRALCHFYTVKNEGNAVVCSLQLL 1172
>gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japonica Group]
Length = 1148
Score = 156 bits (395), Expect = 1e-35
Identities = 100/294 (34%), Positives = 148/294 (50%), Gaps = 11/294 (3%)
Frame = +1
Query: 7 VLKDYKLQPSWXXXXXXXXXXXXXXTDFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWM 186
+L+ +K W DF +LE+ LF +FL RF+PS AA +W+
Sbjct: 856 LLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWL 915
Query: 187 VYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASKTGSKIELPNELRAQKMPHCMN 366
VYMDRLLT + +S E L+ +KML LVD+YY ALDA K G+K+ +P +L ++ PH M+
Sbjct: 916 VYMDRLLTVSLDES-EKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMD 974
Query: 367 DDSDCNLDDYYMSTSLLGELYDLKLDSN---SDDIDETAKKTGDIVMLPDFLEETDK--- 528
Y S+S+LG++YD D SD++ T+ I LP F E
Sbjct: 975 RSPS------YHSSSILGKIYDKAGDPKPLRSDNVQPTS-----ISSLPCFAERDVPPAI 1023
Query: 529 KTLWMKHYEIYRSEMS-----NAMDSPDSSRANDIXXXXXXXXXXADCLDESSKNRSDIY 693
K LW Y Y ++ S A + + ++ A +E+ ++ D++
Sbjct: 1024 KQLWQHRYNEYLADSSLLYAEEADEEEKKIKFQELYEKYKHLLYGASEFEETPRDLDDVF 1083
Query: 694 DEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHRKNPILISASKL 855
EA AIYQ+ Y+ A+S +V +C FAW VAG ALC Y K+ N ++ S L
Sbjct: 1084 SEACAIYQIAYEKARSANNVARCGFAWKVAGRALCHFYTVKNEGNAVVCSLQLL 1137
>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 155 bits (392), Expect = 3e-35
Identities = 100/269 (37%), Positives = 142/269 (52%), Gaps = 7/269 (2%)
Frame = +1
Query: 82 TDFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWMVYMDRLLTPIVAKSKEADLLTEKML 261
++ P +E L FL RF PS A++SW+ MDRLL + + E + ML
Sbjct: 541 SELLPNHIEDALIKLFLKTRFEPSFAMSEASDSWLAMMDRLLILGDSSNSEKTHVKANML 600
Query: 262 LLVDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKL 441
LVD+YY+ALDA K G K+ +P EL++ PH M + Y STS+LG +YD
Sbjct: 601 RLVDLYYEALDAPKKGGKVVVPGELKSNLFPHYMERVNS------YKSTSILGLIYD--- 651
Query: 442 DSNSDDIDETAKKTGDIVMLPDFLEETDKKTL--WMKHYEIYRSEMSNAMDSPDSSRAND 615
N+ ++ + K ++ LP F E ++ L W +HY+ YRSEMS+AM D N+
Sbjct: 652 TVNAYQAEDASIK--EVKKLPMFDVEVPEECLKKWREHYQHYRSEMSSAMQDDDRDSKNN 709
Query: 616 -----IXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFV 780
+ A+ L+ S++ +I+DEA AIY+V YD+A S G V KC FAW V
Sbjct: 710 AADKVLRKYKEILYGGAEDLENSTRPLHEIFDEALAIYRVTYDHAISQGAVGKCCFAWKV 769
Query: 781 AGEALCEIYFEKHRKNPILISASKLYSIL 867
AG ALC+ Y K I S S L ++
Sbjct: 770 AGSALCKYYMNKQGARTIEASFSVLKDLV 798
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 153 bits (386), Expect = 1e-34
Identities = 93/259 (35%), Positives = 143/259 (55%), Gaps = 8/259 (3%)
Frame = +1
Query: 82 TDFFPEDLEQYLFDQFLTCRFSPSNTTGLAANSWMVYMDRLLT-PIVAKSKEADLLTEKM 258
++F PE+LE+ LF FL RF PS G++ NSWM MDRLLT E + + E M
Sbjct: 729 SEFSPEELEEELFRLFLKTRFQPSYAMGMSENSWMALMDRLLTLNNCTNENEKERVKENM 788
Query: 259 LLLVDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYD-L 435
L L+DIYY+ALDA K+G K+++PN+L A+ PH M D + STS+LG +YD +
Sbjct: 789 LKLIDIYYEALDAPKSGRKVQVPNDLIAELFPHYMEKDKS------FTSTSILGLIYDEV 842
Query: 436 KLDSNSDDIDETAK-KTGDIVMLPDFLEETDKKTLWMKHYEIYRSEMSNAMDSPDSSRAN 612
++ +D + E K D+ + P LE+ W YE YR +M++A++ D S+++
Sbjct: 843 EIWLENDMVGEIWKLPCFDVEVPPSCLEK------WKTKYEEYRKDMTDALNLKDKSKSH 896
Query: 613 DIXXXXXXXXXXADC-----LDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWF 777
+ ++ K+ DI++EA A+Y V Y+YA +V++C FAW
Sbjct: 897 EEAAEVNRKYKEEFYGPTLEMEGCLKSIGDIFNEALAVYNVSYEYAMLKKEVKRCGFAWK 956
Query: 778 VAGEALCEIYFEKHRKNPI 834
+AG AL +Y K + +
Sbjct: 957 IAGSALTRLYIIKQNEKAL 975