BLASTX nr result
ID: Ephedra27_contig00016986
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00016986
(562 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containi... 58 1e-06
emb|CBI16904.3| unnamed protein product [Vitis vinifera] 58 1e-06
emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera] 58 1e-06
ref|XP_002520874.1| pentatricopeptide repeat-containing protein,... 58 2e-06
ref|XP_002512657.1| pentatricopeptide repeat-containing protein,... 57 3e-06
ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containi... 57 4e-06
ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containi... 57 4e-06
ref|XP_006842433.1| hypothetical protein AMTR_s00077p00031710 [A... 56 7e-06
ref|XP_006301077.1| hypothetical protein CARUB_v10021470mg [Caps... 56 7e-06
ref|XP_002888838.1| pentatricopeptide repeat-containing protein ... 56 7e-06
ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containi... 55 9e-06
>ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 58.2 bits (139), Expect = 1e-06
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Frame = -1
Query: 322 SEQALNLHNSGIRKLCRENNLQEALQGINKMLEMEIDVQNFTYQSFLRACGKTQNLIYAK 143
+EQ + N+ I + +EA + +KMLEM +D NFTY + L C + K
Sbjct: 539 AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGK 598
Query: 142 KLHRLLI--TLEKDSEFVQTLIYAYAMCNTLLDARMVFDKTQN 20
++H +I L+ D+ TL+ Y+ C + D +++F+K N
Sbjct: 599 QIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPN 641
>emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 58.2 bits (139), Expect = 1e-06
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Frame = -1
Query: 322 SEQALNLHNSGIRKLCRENNLQEALQGINKMLEMEIDVQNFTYQSFLRACGKTQNLIYAK 143
+EQ + N+ I + +EA + +KMLEM +D NFTY + L C + K
Sbjct: 492 AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGK 551
Query: 142 KLHRLLI--TLEKDSEFVQTLIYAYAMCNTLLDARMVFDKTQN 20
++H +I L+ D+ TL+ Y+ C + D +++F+K N
Sbjct: 552 QIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPN 594
>emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 58.2 bits (139), Expect = 1e-06
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Frame = -1
Query: 322 SEQALNLHNSGIRKLCRENNLQEALQGINKMLEMEIDVQNFTYQSFLRACGKTQNLIYAK 143
+EQ + N+ I + +EA + +KMLEM +D NFTY + L C + K
Sbjct: 476 AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGK 535
Query: 142 KLHRLLI--TLEKDSEFVQTLIYAYAMCNTLLDARMVFDKTQN 20
++H +I L+ D+ TL+ Y+ C + D +++F+K N
Sbjct: 536 QIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPN 578
>ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540005|gb|EEF41583.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 833
Score = 57.8 bits (138), Expect = 2e-06
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = -1
Query: 313 ALNLHNSGIRKLCRENNLQEALQGINKMLEMEIDVQNFTYQSFLRACGKTQNLIYAKKLH 134
+L+L NS I+ L ++ EAL+ K + FTY S L+AC NL Y K +H
Sbjct: 20 SLSLLNSEIKSLVQQRQYIEALKLYTKS---PVYTTRFTYPSLLKACASLSNLQYGKTIH 76
Query: 133 RLLIT--LEKDSEFVQTLIYAYAMCNTLLDARMVFDK 29
+IT L D +LI Y C T DA VFD+
Sbjct: 77 SSIITTGLHSDQYITSSLINIYVKCGTFTDAVKVFDQ 113
>ref|XP_002512657.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548618|gb|EEF50109.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 837
Score = 57.0 bits (136), Expect = 3e-06
Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Frame = -1
Query: 337 HSCQQSEQALNLHNSGIRKLCRENNLQEALQGINKMLEMEIDVQNFTYQSFLRACGKTQN 158
H QQ+ + + N + L ++ L+EA + + +M++ I V +Y++ CG +++
Sbjct: 47 HQAQQNRKG-QVENVHLVSLSKQGKLKEAREFLKQMVDAGISVSPDSYRNLFEICGNSKS 105
Query: 157 LIYAKKLHRLL-ITLEKDSEFVQ-TLIYAYAMCNTLLDARMVFDK 29
L K +H LL T+EK S F++ T++ Y +C +L DA VFDK
Sbjct: 106 LSDGKIIHELLRRTVEKPSVFLENTVLKMYCVCESLEDAYKVFDK 150
>ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Cucumis sativus]
Length = 716
Score = 56.6 bits (135), Expect = 4e-06
Identities = 28/92 (30%), Positives = 60/92 (65%), Gaps = 2/92 (2%)
Frame = -1
Query: 289 IRKLCRENNLQEALQGINKMLEMEIDVQNFTYQSFLRACGKTQNLIYAKKLH-RLLITLE 113
+++ R+N L+EAL ++ + + I V T+ S + AC +T+++ YAK++H + I
Sbjct: 86 VQRFARQNKLKEALTIMDYVDQQGIPVNATTFSSLITACVRTKSMTYAKQIHAHIRINGL 145
Query: 112 KDSEFVQT-LIYAYAMCNTLLDARMVFDKTQN 20
+++EF++T L++ Y C +L +A+ +FD++ +
Sbjct: 146 ENNEFIRTRLVHMYTACGSLEEAQKLFDESSS 177
>ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Cucumis sativus]
Length = 696
Score = 56.6 bits (135), Expect = 4e-06
Identities = 28/92 (30%), Positives = 60/92 (65%), Gaps = 2/92 (2%)
Frame = -1
Query: 289 IRKLCRENNLQEALQGINKMLEMEIDVQNFTYQSFLRACGKTQNLIYAKKLH-RLLITLE 113
+++ R+N L+EAL ++ + + I V T+ S + AC +T+++ YAK++H + I
Sbjct: 86 VQRFARQNKLKEALTIMDYVDQQGIPVNATTFSSLITACVRTKSMTYAKQIHAHIRINGL 145
Query: 112 KDSEFVQT-LIYAYAMCNTLLDARMVFDKTQN 20
+++EF++T L++ Y C +L +A+ +FD++ +
Sbjct: 146 ENNEFIRTRLVHMYTACGSLEEAQKLFDESSS 177
>ref|XP_006842433.1| hypothetical protein AMTR_s00077p00031710 [Amborella trichopoda]
gi|548844519|gb|ERN04108.1| hypothetical protein
AMTR_s00077p00031710 [Amborella trichopoda]
Length = 932
Score = 55.8 bits (133), Expect = 7e-06
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = -1
Query: 298 NSGIRKLCRENNLQEALQGINKMLEMEIDVQNFTYQSFLRACGKTQNLIYAKKLHRLL-- 125
N+ I + + +E L+ +KM++ + +T+ L+ACGK L K +H+
Sbjct: 409 NAMISAYTQRDYHKEGLELYSKMVKQGVKPNLYTFACVLKACGKLGALAEGKNVHKYAKE 468
Query: 124 ITLEKDSEFVQTLIYAYAMCNTLLDARMVFDKTQNNMD 11
+ LE +S LI YA C+ L DARMVFDK +N D
Sbjct: 469 LDLESNSVVGTALIDMYAKCDCLSDARMVFDKLADNGD 506
>ref|XP_006301077.1| hypothetical protein CARUB_v10021470mg [Capsella rubella]
gi|482569787|gb|EOA33975.1| hypothetical protein
CARUB_v10021470mg [Capsella rubella]
Length = 688
Score = 55.8 bits (133), Expect = 7e-06
Identities = 31/104 (29%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Frame = -1
Query: 322 SEQALNLHNSGIRKLCRENNLQEALQGINKMLEMEIDVQNFTYQSFLRACGKTQNLIYAK 143
S+ ++H I+ R+NNL++AL ++ + + I V T+ + L AC + ++LI+ K
Sbjct: 72 SKNPCSIHRD-IQSFARKNNLEDALTILDYLEQRGIPVNATTFSALLAACVRRKSLIHGK 130
Query: 142 KLH-RLLITLEKDSEFVQT-LIYAYAMCNTLLDARMVFDKTQNN 17
++H + I + +EF++T L++ Y C ++ DA+ VFD++ ++
Sbjct: 131 QVHVHIRINGLESNEFLRTKLVHMYTACGSVKDAQKVFDESTSS 174
>ref|XP_002888838.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297334679|gb|EFH65097.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 688
Score = 55.8 bits (133), Expect = 7e-06
Identities = 28/93 (30%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Frame = -1
Query: 289 IRKLCRENNLQEALQGINKMLEMEIDVQNFTYQSFLRACGKTQNLIYAKKLH-RLLITLE 113
I++ R+NNL++AL ++ + + I V T+ + L AC + ++L++ K++H + I
Sbjct: 82 IQRFARKNNLEDALTILDYLEQRGIPVNATTFSALLAACVRRKSLLHGKQVHVHIRINGL 141
Query: 112 KDSEFVQT-LIYAYAMCNTLLDARMVFDKTQNN 17
+ +EF++T L++ Y C ++ DA+ VFD++ ++
Sbjct: 142 ESNEFIRTKLVHMYTACGSVRDAQKVFDESTSS 174
>ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Vitis vinifera]
Length = 725
Score = 55.5 bits (132), Expect = 9e-06
Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Frame = -1
Query: 295 SGIRKLCRENNLQEALQGINKMLEMEIDVQNFTYQSFLRACGKTQNLIYAKKLH-RLLIT 119
S I++ R+ L+EAL ++ + I V T+ S LRAC ++++L + K++H + I
Sbjct: 121 SDIQRFARQGKLKEALTILDYCDQQGIPVNPTTFSSLLRACVESKSLTHGKQIHVHIRIN 180
Query: 118 LEKDSEFVQT-LIYAYAMCNTLLDARMVFD 32
+++EF++T L++ Y C +L DAR VFD
Sbjct: 181 GLENNEFLRTKLVHMYTSCGSLEDARGVFD 210