BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00016975
         (440 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXB55730.1| DNA-directed RNA polymerase II subunit [Morus not...    64   3e-08
gb|EOY06688.1| RNA polymerases M/15 Kd subunit [Theobroma cacao]       64   3e-08
ref|XP_004487774.1| PREDICTED: DNA-directed RNA polymerase II su...    64   3e-08
ref|XP_004239877.1| PREDICTED: DNA-directed RNA polymerase II su...    64   3e-08
ref|XP_004134242.1| PREDICTED: DNA-directed RNA polymerase II su...    64   3e-08
ref|XP_003594777.1| DNA-directed RNA polymerase II subunit RPB9 ...    64   3e-08
ref|XP_003546327.1| PREDICTED: DNA-directed RNA polymerases II, ...    64   3e-08
ref|NP_001235803.1| uncharacterized protein LOC100305979 [Glycin...    64   3e-08
ref|XP_002312337.1| DNA-directed RNA polymerase II family protei...    62   6e-08
ref|XP_006406782.1| hypothetical protein EUTSA_v10021989mg [Eutr...    62   8e-08
ref|XP_006299525.1| hypothetical protein CARUB_v10015697mg [Caps...    62   8e-08
ref|XP_002883036.1| hypothetical protein ARALYDRAFT_318462 [Arab...    62   8e-08
ref|NP_188323.1| DNA-directed RNA polymerases II, IV and V subun...    62   8e-08
ref|XP_004981893.1| PREDICTED: DNA-directed RNA polymerase II su...    62   1e-07
gb|EMJ24706.1| hypothetical protein PRUPE_ppa013594mg [Prunus pe...    62   1e-07
gb|ESW10991.1| hypothetical protein PHAVU_009G256100g [Phaseolus...    61   1e-07
ref|XP_004295094.1| PREDICTED: DNA-directed RNA polymerase II su...    61   1e-07
ref|XP_002962042.1| hypothetical protein SELMODRAFT_77443 [Selag...    61   1e-07
ref|XP_001782379.1| predicted protein [Physcomitrella patens] gi...    61   1e-07
ref|XP_002276956.1| PREDICTED: DNA-directed RNA polymerase II su...    61   1e-07

>gb|EXB55730.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 192

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 168 TARGEEGMTLFFVCCNPNCGHRWRD 192


>gb|EOY06688.1| RNA polymerases M/15 Kd subunit [Theobroma cacao]
          Length = 114

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 90  TARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_004487774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Cicer
           arietinum]
          Length = 114

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 90  TARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_004239877.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
           [Solanum lycopersicum] gi|565378585|ref|XP_006355736.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 9A-like [Solanum tuberosum]
          Length = 114

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 90  TARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_004134242.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
           [Cucumis sativus] gi|449517969|ref|XP_004166016.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB9-like [Cucumis sativus]
          Length = 114

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 90  TARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_003594777.1| DNA-directed RNA polymerase II subunit RPB9 [Medicago truncatula]
           gi|87240462|gb|ABD32320.1| DNA-directed RNA polymerase,
           subunit C11/M/9 [Medicago truncatula]
           gi|217075262|gb|ACJ85991.1| unknown [Medicago
           truncatula] gi|355483825|gb|AES65028.1| DNA-directed RNA
           polymerase II subunit RPB9 [Medicago truncatula]
           gi|388497558|gb|AFK36845.1| unknown [Medicago
           truncatula]
          Length = 114

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 90  TARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_003546327.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           9A-like [Glycine max]
          Length = 114

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 90  TARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|NP_001235803.1| uncharacterized protein LOC100305979 [Glycine max]
           gi|255627167|gb|ACU13928.1| unknown [Glycine max]
          Length = 114

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 90  TARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_002312337.1| DNA-directed RNA polymerase II family protein [Populus trichocarpa]
           gi|222852157|gb|EEE89704.1| DNA-directed RNA polymerase
           II family protein [Populus trichocarpa]
          Length = 114

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           T+RGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 90  TSRGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_006406782.1| hypothetical protein EUTSA_v10021989mg [Eutrema salsugineum]
           gi|557107928|gb|ESQ48235.1| hypothetical protein
           EUTSA_v10021989mg [Eutrema salsugineum]
          Length = 114

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 90  TARGEEGMTLFFVCCNPNCGHRWRE 114


>ref|XP_006299525.1| hypothetical protein CARUB_v10015697mg [Capsella rubella]
           gi|482568234|gb|EOA32423.1| hypothetical protein
           CARUB_v10015697mg [Capsella rubella]
          Length = 114

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 90  TARGEEGMTLFFVCCNPNCGHRWRE 114


>ref|XP_002883036.1| hypothetical protein ARALYDRAFT_318462 [Arabidopsis lyrata subsp.
           lyrata] gi|297328876|gb|EFH59295.1| hypothetical protein
           ARALYDRAFT_318462 [Arabidopsis lyrata subsp. lyrata]
          Length = 114

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 90  TARGEEGMTLFFVCCNPNCGHRWRE 114


>ref|NP_188323.1| DNA-directed RNA polymerases II, IV and V subunit 9A [Arabidopsis
           thaliana] gi|75126970|sp|Q6NLH0.1|RPB9A_ARATH RecName:
           Full=DNA-directed RNA polymerases II, IV and V subunit
           9A gi|45752612|gb|AAS76204.1| At3g16980 [Arabidopsis
           thaliana] gi|46359779|gb|AAS88753.1| At3g16980
           [Arabidopsis thaliana] gi|332642370|gb|AEE75891.1|
           DNA-directed RNA polymerase NRPB9A/NRPD9A/NRPE9A
           [Arabidopsis thaliana]
          Length = 114

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 90  TARGEEGMTLFFVCCNPNCGHRWRE 114


>ref|XP_004981893.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
           [Setaria italica]
          Length = 115

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNP+CGHRWRD
Sbjct: 91  TARGEEGMTLFFVCCNPSCGHRWRD 115


>gb|EMJ24706.1| hypothetical protein PRUPE_ppa013594mg [Prunus persica]
          Length = 114

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNP+CGHRWRD
Sbjct: 90  TARGEEGMTLFFVCCNPSCGHRWRD 114


>gb|ESW10991.1| hypothetical protein PHAVU_009G256100g [Phaseolus vulgaris]
          Length = 114

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 90  TARGEEGMTLFFVCCNPNCGYRWRD 114


>ref|XP_004295094.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
           [Fragaria vesca subsp. vesca]
          Length = 114

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 90  TARGEEGMTLFFVCCNPNCGYRWRD 114


>ref|XP_002962042.1| hypothetical protein SELMODRAFT_77443 [Selaginella moellendorffii]
           gi|302775260|ref|XP_002971047.1| hypothetical protein
           SELMODRAFT_95006 [Selaginella moellendorffii]
           gi|300161029|gb|EFJ27645.1| hypothetical protein
           SELMODRAFT_95006 [Selaginella moellendorffii]
           gi|300170701|gb|EFJ37302.1| hypothetical protein
           SELMODRAFT_77443 [Selaginella moellendorffii]
          Length = 114

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 90  TARGEEGMTLFFVCCNPNCGYRWRD 114


>ref|XP_001782379.1| predicted protein [Physcomitrella patens]
           gi|162666171|gb|EDQ52833.1| predicted protein
           [Physcomitrella patens]
          Length = 114

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 90  TARGEEGMTLFFVCCNPNCGYRWRD 114


>ref|XP_002276956.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Vitis
           vinifera] gi|147769002|emb|CAN66735.1| hypothetical
           protein VITISV_024186 [Vitis vinifera]
           gi|296083263|emb|CBI22899.3| unnamed protein product
           [Vitis vinifera]
          Length = 114

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 TARGEEGMTLFFVCCNPNCGHRWRD 364
           TARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 90  TARGEEGMTLFFVCCNPNCGYRWRD 114