BLASTX nr result
ID: Ephedra27_contig00016442
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00016442
(480 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EKD16248.1| RNase H domain protein [Marssonina brunnea f. sp.... 60 2e-07
ref|WP_022794665.1| ribonuclease H [Marinococcus halotolerans] 59 9e-07
ref|WP_009432255.1| ribonuclease H [Porphyromonas sp. oral taxon... 59 9e-07
gb|EWC92701.1| caulimovirus viroplasmin [Porphyromonas catoniae ... 58 1e-06
ref|WP_005467675.1| putative ribonuclease H [Porphyromonas caton... 58 1e-06
ref|YP_005310521.1| protein RnhA [Paenibacillus mucilaginosus 30... 58 1e-06
ref|YP_004638949.1| protein RnhA [Paenibacillus mucilaginosus KN... 58 1e-06
ref|WP_021667318.1| putative ribonuclease H [Porphyromonas sp. o... 57 2e-06
ref|XP_002730361.1| PREDICTED: ribonuclease H1-like [Saccoglossu... 56 6e-06
ref|XP_003386709.1| PREDICTED: ribonuclease H1-like [Amphimedon ... 55 1e-05
>gb|EKD16248.1| RNase H domain protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 405
Score = 60.5 bits (145), Expect = 2e-07
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = +1
Query: 100 WYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEAVFRYNEFLRTGAIPAPKRRY 279
+Y V VG PGVY WA+ +EQ G KPKF+KF++ +EA F+R+GA+ A +++
Sbjct: 133 FYGVAVGHLPGVYTNWADANEQILGAEKPKFKKFETRKEA----EAFVRSGAV-AQRKKV 187
Query: 280 GARHGVFEDEGSTSTYSQGDHQPQQSQE 363
A+ V +D+G + D ++
Sbjct: 188 EAKRAVKDDDGEEGGEDEEDEDEDDDED 215
>ref|WP_022794665.1| ribonuclease H [Marinococcus halotolerans]
Length = 214
Score = 58.5 bits (140), Expect = 9e-07
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = +1
Query: 100 WYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEAVFRYN 234
WYVV+ G++PG+Y+TWAEC++Q GF +F+ F S EEA +N
Sbjct: 24 WYVVWKGKKPGIYSTWAECEKQVKGFKGARFKSFSSYEEAETAFN 68
>ref|WP_009432255.1| ribonuclease H [Porphyromonas sp. oral taxon 279]
gi|402268566|gb|EJU17933.1| caulimovirus viroplasmin
[Porphyromonas sp. oral taxon 279 str. F0450]
Length = 251
Score = 58.5 bits (140), Expect = 9e-07
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = +1
Query: 100 WYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEAVFRYNE 237
WYVV+ G +PGVY TWAEC Q G+ K F+ F+S EA+ Y E
Sbjct: 49 WYVVWAGHEPGVYETWAECQRQTQGYPKALFKSFESRSEALRAYEE 94
>gb|EWC92701.1| caulimovirus viroplasmin [Porphyromonas catoniae ATCC 51270]
Length = 208
Score = 57.8 bits (138), Expect = 1e-06
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = +1
Query: 100 WYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEAVFRYNE 237
WYVV+ G +PGVY TW+EC Q G+ KF+ FDS EA Y +
Sbjct: 7 WYVVWAGHEPGVYETWSECQAQTTGYPNAKFKAFDSEREARMAYED 52
>ref|WP_005467675.1| putative ribonuclease H [Porphyromonas catoniae]
gi|429157648|gb|EKY00229.1| putative ribonuclease H
[Porphyromonas catoniae F0037]
Length = 208
Score = 57.8 bits (138), Expect = 1e-06
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = +1
Query: 100 WYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEAVFRYNE 237
WYVV+ G +PGVY TW+EC Q G+ KF+ FDS EA Y +
Sbjct: 7 WYVVWAGHEPGVYETWSECQAQTTGYPNAKFKAFDSEREARMAYED 52
>ref|YP_005310521.1| protein RnhA [Paenibacillus mucilaginosus 3016]
gi|386720956|ref|YP_006187281.1| ribonuclease H
[Paenibacillus mucilaginosus K02]
gi|504176351|ref|WP_014368275.1| ribonuclease H
[Paenibacillus mucilaginosus]
gi|378567062|gb|AFC27372.1| RnhA [Paenibacillus
mucilaginosus 3016] gi|384088080|gb|AFH59516.1|
ribonuclease H [Paenibacillus mucilaginosus K02]
Length = 226
Score = 57.8 bits (138), Expect = 1e-06
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = +1
Query: 100 WYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEA 219
WYVV+ GRQPGVY TWAEC Q GF + KF+ ++S EA
Sbjct: 6 WYVVWEGRQPGVYKTWAECQAQTSGFPQAKFKAYESEAEA 45
>ref|YP_004638949.1| protein RnhA [Paenibacillus mucilaginosus KNP414]
gi|503680169|ref|WP_013914245.1| ribonuclease H
[Paenibacillus mucilaginosus]
gi|336295976|gb|AEI39079.1| RnhA [Paenibacillus
mucilaginosus KNP414]
Length = 226
Score = 57.8 bits (138), Expect = 1e-06
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = +1
Query: 100 WYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEA 219
WYVV+ GRQPGVY TWAEC Q GF + KF+ ++S EA
Sbjct: 6 WYVVWEGRQPGVYKTWAECQAQTSGFPQAKFKAYESEAEA 45
>ref|WP_021667318.1| putative ribonuclease H [Porphyromonas sp. oral taxon 278]
gi|543965280|gb|ERJ71989.1| putative ribonuclease H
[Porphyromonas sp. oral taxon 278 str. W7784]
Length = 209
Score = 57.4 bits (137), Expect = 2e-06
Identities = 23/48 (47%), Positives = 30/48 (62%)
Frame = +1
Query: 94 RFWYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEAVFRYNE 237
R WYVV+ G +PGVY TW EC Q G+ P F+ F+S +A+ Y E
Sbjct: 5 RKWYVVWAGHEPGVYETWVECQRQTQGYPSPVFKSFESHSDALRAYEE 52
>ref|XP_002730361.1| PREDICTED: ribonuclease H1-like [Saccoglossus kowalevskii]
Length = 309
Score = 55.8 bits (133), Expect = 6e-06
Identities = 24/45 (53%), Positives = 33/45 (73%)
Frame = +1
Query: 85 TMVRFWYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEA 219
TM +F+Y V VGR+PGVYNTW EC++Q F K +++KF L +A
Sbjct: 13 TMGKFFYAVRVGRKPGVYNTWPECEKQVKEFPKARYKKFPLLSQA 57
>ref|XP_003386709.1| PREDICTED: ribonuclease H1-like [Amphimedon queenslandica]
Length = 244
Score = 55.1 bits (131), Expect = 1e-05
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +1
Query: 100 WYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEAVFRYNEFLRTGAIPAPKRRY 279
+Y V GR+ G+Y+TW +C EQ GFS+P F+KF +LEEA E TG I +
Sbjct: 6 YYAVKRGRKTGIYHTWKDCREQVDGFSRPVFKKFPTLEEA-----ESFITGPITRTQYHQ 60
Query: 280 GARHGVFEDEGSTSTYSQG-DHQPQQSQESSARI 378
R+ + T S G P +S S +
Sbjct: 61 TGRYNPYNRASRCGTSSSGYGTYPSESGSQSVAV 94