BLASTX nr result
ID: Ephedra27_contig00015827
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00015827
(414 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a... 272 3e-71
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 271 9e-71
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 271 9e-71
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 271 9e-71
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 271 9e-71
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 270 2e-70
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 269 3e-70
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 268 4e-70
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 268 7e-70
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 254 8e-66
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 226 3e-57
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 204 8e-51
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 195 5e-48
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 195 5e-48
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 185 6e-45
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 181 9e-44
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 179 3e-43
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 179 3e-43
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 179 3e-43
ref|NP_077079.1| replicase [Clover yellow mosaic virus] 172 4e-41
>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 711
Score = 272 bits (696), Expect = 3e-71
Identities = 133/137 (97%), Positives = 135/137 (98%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFS
Sbjct: 51 PVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFS 110
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAG
Sbjct: 111 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAG 170
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQGITAPRV
Sbjct: 171 HKVSTYAGCQGITAPRV 187
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 271 bits (692), Expect = 9e-71
Identities = 131/137 (95%), Positives = 135/137 (98%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFS
Sbjct: 720 PVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFS 779
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAG
Sbjct: 780 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAG 839
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQGITAPRV
Sbjct: 840 HKVSTYAGCQGITAPRV 856
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 271 bits (692), Expect = 9e-71
Identities = 131/137 (95%), Positives = 135/137 (98%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFS
Sbjct: 720 PVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFS 779
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAG
Sbjct: 780 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAG 839
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQGITAPRV
Sbjct: 840 HKVSTYAGCQGITAPRV 856
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 271 bits (692), Expect = 9e-71
Identities = 131/137 (95%), Positives = 135/137 (98%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFS
Sbjct: 720 PVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFS 779
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAG
Sbjct: 780 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAG 839
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQGITAPRV
Sbjct: 840 HKVSTYAGCQGITAPRV 856
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 271 bits (692), Expect = 9e-71
Identities = 131/137 (95%), Positives = 135/137 (98%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFS
Sbjct: 720 PVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFS 779
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAG
Sbjct: 780 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAG 839
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQGITAPRV
Sbjct: 840 HKVSTYAGCQGITAPRV 856
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 270 bits (689), Expect = 2e-70
Identities = 129/137 (94%), Positives = 135/137 (98%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
PVVIFDDYGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTHHEANEEALISKL+PATT FS
Sbjct: 708 PVVIFDDYGKLPQGYIEAFAMTHANLELIILTGDPRQSTHHEANEEALISKLSPATTTFS 767
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
ELSRYYINATHRNSKFLANKLG+YSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAG
Sbjct: 768 ELSRYYINATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAG 827
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQGITAPRV
Sbjct: 828 HKVSTYAGCQGITAPRV 844
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 269 bits (688), Expect = 3e-70
Identities = 130/137 (94%), Positives = 135/137 (98%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFS
Sbjct: 720 PVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFS 779
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP+PG+HLLVPSL+KKAAFTDAG
Sbjct: 780 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPRPGLHLLVPSLVKKAAFTDAG 839
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQGITAPRV
Sbjct: 840 HKVSTYAGCQGITAPRV 856
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 268 bits (686), Expect = 4e-70
Identities = 130/137 (94%), Positives = 134/137 (97%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFS
Sbjct: 720 PVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFS 779
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
ELSRYYINATHRNSK LANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAG
Sbjct: 780 ELSRYYINATHRNSKLLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAG 839
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQGITAPRV
Sbjct: 840 HKVSTYAGCQGITAPRV 856
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 268 bits (684), Expect = 7e-70
Identities = 129/137 (94%), Positives = 134/137 (97%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
PVVIFDDYGKLPQGY+EAFA+THASLELVILTGDPRQSTHHE+NEEALISKL PAT IFS
Sbjct: 720 PVVIFDDYGKLPQGYLEAFALTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFS 779
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
ELSRYYINATHRNSKFLANKLGVYSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAG
Sbjct: 780 ELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAG 839
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQGITAPRV
Sbjct: 840 HKVSTYAGCQGITAPRV 856
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 254 bits (649), Expect = 8e-66
Identities = 122/137 (89%), Positives = 131/137 (95%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
PVVIFDDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTHHE+NEEALISKL PATTI+S
Sbjct: 725 PVVIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHHESNEEALISKLPPATTIYS 784
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
SRYYINAT RNSKFLANKLGVYS+NSCPL VTYGFQP PG+HLLVPSLMKKAAFTDAG
Sbjct: 785 AFSRYYINATLRNSKFLANKLGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKKAAFTDAG 844
Query: 52 HKVSTYAGCQGITAPRV 2
HKVS+YAGCQGITAP+V
Sbjct: 845 HKVSSYAGCQGITAPKV 861
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 226 bits (575), Expect = 3e-57
Identities = 107/137 (78%), Positives = 122/137 (89%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
PVVIFDDYGKLPQG++EAFA+ L+L ILTGDPRQSTHHE+NE+A+I++L PAT IFS
Sbjct: 701 PVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTHHESNEQAMIAQLEPATKIFS 760
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
L RYYINATHRN K LANKLGVYSSN PL V+YGF+P+PG+HLLVPSL+KKAAF DAG
Sbjct: 761 ALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVKKAAFADAG 820
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQGITAP+V
Sbjct: 821 HKVSTYAGCQGITAPKV 837
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 204 bits (520), Expect = 8e-51
Identities = 94/137 (68%), Positives = 118/137 (86%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A+I++L P+T IFS
Sbjct: 795 PSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLEPSTQIFS 854
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
+ SRYYINATHRN+K LAN LGVYS N+ LK+T+GFQP +HLLVPSL+KKAAF++AG
Sbjct: 855 QFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKKAAFSEAG 914
Query: 52 HKVSTYAGCQGITAPRV 2
HK STYAGCQGITA ++
Sbjct: 915 HKTSTYAGCQGITARKL 931
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 195 bits (496), Expect = 5e-48
Identities = 93/137 (67%), Positives = 109/137 (79%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
PVV+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE NE+A+IS+LAPAT +F
Sbjct: 727 PVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEVFQ 786
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
L RYYINATHRN + LANKL VYS K+T GFQP +HLLVPSL+KK+A+ + G
Sbjct: 787 PLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGEMG 846
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQGITAP++
Sbjct: 847 HKVSTYAGCQGITAPKI 863
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 195 bits (496), Expect = 5e-48
Identities = 93/137 (67%), Positives = 109/137 (79%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
PVV+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE NE+A+IS+LAPAT +F
Sbjct: 727 PVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEVFQ 786
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
L RYYINATHRN + LANKL VYS K+T GFQP +HLLVPSL+KK+A+ + G
Sbjct: 787 PLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGEMG 846
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQGITAP++
Sbjct: 847 HKVSTYAGCQGITAPKI 863
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 185 bits (469), Expect = 6e-45
Identities = 87/137 (63%), Positives = 107/137 (78%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
P+VIFDDYGKLP GY+EAF + ++++L+ILTGD +QS HHE+NE A S + P S
Sbjct: 882 PIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENATTSSIEPLVKEAS 941
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
EL RYYINATHRN K LANKLGVYS + +VT+G P PG+H+LVPSL KK AF++ G
Sbjct: 942 ELCRYYINATHRNKKDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKKQAFSEMG 1001
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQGITAP++
Sbjct: 1002 HKVSTYAGCQGITAPKI 1018
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 181 bits (459), Expect = 9e-44
Identities = 88/137 (64%), Positives = 105/137 (76%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
P VIFDDYGKLP GYIEAF+ +S+EL++LTGD +QS HHE+NE A+ S + P T
Sbjct: 876 PTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDSKQSVHHESNENAMSSLIEPFTLEAD 935
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
+ SRYYINATHRN + LANKLGVYS + +T G P PG+HLLVPSL KK AF++ G
Sbjct: 936 KYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEAFSEMG 995
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQG+TAPRV
Sbjct: 996 HKVSTYAGCQGLTAPRV 1012
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 179 bits (455), Expect = 3e-43
Identities = 87/137 (63%), Positives = 104/137 (75%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
P VIFDDYGKLP GYIE+F+ +S EL++LTGD +QS HHE+NE A+ S + P T
Sbjct: 876 PTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEAD 935
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
+ SRYYINATHRN + LANKLGVYS + +T G P PG+HLLVPSL KK AF++ G
Sbjct: 936 KYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEAFSEMG 995
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQG+TAPRV
Sbjct: 996 HKVSTYAGCQGLTAPRV 1012
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 179 bits (455), Expect = 3e-43
Identities = 87/137 (63%), Positives = 104/137 (75%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
P VIFDDYGKLP GYIE+F+ +S EL++LTGD +QS HHE+NE A+ S + P T
Sbjct: 876 PTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEAD 935
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
+ SRYYINATHRN + LANKLGVYS + +T G P PG+HLLVPSL KK AF++ G
Sbjct: 936 KYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQAFSEMG 995
Query: 52 HKVSTYAGCQGITAPRV 2
HKVSTYAGCQG+TAPRV
Sbjct: 996 HKVSTYAGCQGLTAPRV 1012
>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
replicase [Alternanthera mosaic virus]
Length = 1541
Score = 179 bits (454), Expect = 3e-43
Identities = 87/137 (63%), Positives = 103/137 (75%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
P VIFDDYGKLP GYIEAF+ +S EL++LTGD +QS HHE+NE A+ S + P T
Sbjct: 876 PTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEAD 935
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
+ SRYYINATHRN + LANKLGVYS + +T G P PG+HLLVPSL KK AF++ G
Sbjct: 936 KYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQAFSEMG 995
Query: 52 HKVSTYAGCQGITAPRV 2
HK STYAGCQG+TAPRV
Sbjct: 996 HKASTYAGCQGLTAPRV 1012
>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
Length = 1670
Score = 172 bits (436), Expect = 4e-41
Identities = 83/137 (60%), Positives = 104/137 (75%)
Frame = -3
Query: 412 PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 233
PVVIFDDY KLP GYI+AF H ++E ILTGDPRQST HE+NE+A+I+ L+ +T FS
Sbjct: 1016 PVVIFDDYSKLPAGYIDAFLSLHKNVEWAILTGDPRQSTFHESNEQAMINHLSKSTEHFS 1075
Query: 232 ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 53
+ SRYYINATHRN + LA LGVYS + ++ +P+P HLLVPSL+KK ++T+ G
Sbjct: 1076 QFSRYYINATHRNKQDLARFLGVYSEKTGLTSISMSSRPEPDWHLLVPSLIKKRSYTEMG 1135
Query: 52 HKVSTYAGCQGITAPRV 2
+K STYAGCQGITA RV
Sbjct: 1136 YKTSTYAGCQGITADRV 1152