BLASTX nr result
ID: Ephedra27_contig00015349
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00015349
(472 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABK26380.1| unknown [Picea sitchensis] 206 3e-51
ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III ... 194 1e-47
ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citr... 192 4e-47
gb|EOY13785.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao] 189 3e-46
ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, ... 185 5e-45
ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, I... 184 8e-45
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s... 184 8e-45
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi... 184 8e-45
ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, ... 184 1e-44
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I... 184 1e-44
ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [S... 184 1e-44
ref|XP_006402674.1| hypothetical protein EUTSA_v10006298mg [Eutr... 182 5e-44
ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana] gi|2... 182 5e-44
ref|XP_006397103.1| hypothetical protein EUTSA_v10029046mg [Eutr... 181 7e-44
ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, I... 181 7e-44
ref|XP_006305757.1| hypothetical protein CARUB_v10010575mg [Caps... 181 9e-44
ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, I... 181 9e-44
ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, ... 181 1e-43
ref|NP_175827.1| DNA-directed RNA polymerases II and V subunit 8... 181 1e-43
ref|XP_002891800.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrat... 181 1e-43
>gb|ABK26380.1| unknown [Picea sitchensis]
Length = 145
Score = 206 bits (524), Expect = 3e-51
Identities = 103/128 (80%), Positives = 112/128 (87%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFDKVSRIEARSEQFDMYMLLDVNI+VYPVSVGEKF VAL+ TLNLDGTPD GYFIQ
Sbjct: 18 DGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVALAPTLNLDGTPDNGYFIQ 77
Query: 183 -GRKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQR 359
GRK+LADKYEYVM GK+Y + E GSG + KVE+ S+GGLLMLLKGDP N FELDQR
Sbjct: 78 GGRKSLADKYEYVMYGKLYNLSEEGSGANVKVEINASFGGLLMLLKGDPSNAGNFELDQR 137
Query: 360 LFLLMRKV 383
LFLLMRKV
Sbjct: 138 LFLLMRKV 145
>ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
putative [Ricinus communis] gi|223530164|gb|EEF32075.1|
DNA-directed RNA polymerases I, II, and III 17.1 kDa
polypeptide, putative [Ricinus communis]
Length = 146
Score = 194 bits (493), Expect = 1e-47
Identities = 94/128 (73%), Positives = 112/128 (87%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFDKVSRIEA S+ DM+M LDVN E+YP++VG+KFT+AL+ TLNLDGTPDTGY+ Q
Sbjct: 19 DGKKFDKVSRIEAHSQNCDMFMHLDVNTEIYPMAVGDKFTMALAHTLNLDGTPDTGYYTQ 78
Query: 183 G-RKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQR 359
G RKTLADKYEY+MNGK+YKI E GSG + K E+ VSYGGLLMLL+GDP ++S FELDQR
Sbjct: 79 GARKTLADKYEYIMNGKLYKISEEGSGKAVKAEMLVSYGGLLMLLRGDPSHVSHFELDQR 138
Query: 360 LFLLMRKV 383
LFLLMRK+
Sbjct: 139 LFLLMRKL 146
>ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citrus clementina]
gi|568850174|ref|XP_006478800.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like [Citrus
sinensis] gi|557545143|gb|ESR56121.1| hypothetical
protein CICLE_v10022723mg [Citrus clementina]
Length = 146
Score = 192 bits (488), Expect = 4e-47
Identities = 94/128 (73%), Positives = 111/128 (86%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFDKVSRIEA S+ DMYMLLDVN E+YP+ VG+KFT+AL+ TLNLDGTPDTGY+
Sbjct: 19 DGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTP 78
Query: 183 G-RKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQR 359
G RKTLADKYEY+M+GK++KI + GSG S K E+YVSYGGLLM+LKGDP +S FELDQR
Sbjct: 79 GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQR 138
Query: 360 LFLLMRKV 383
LFLLMRK+
Sbjct: 139 LFLLMRKL 146
>gb|EOY13785.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao]
Length = 145
Score = 189 bits (480), Expect = 3e-46
Identities = 88/127 (69%), Positives = 111/127 (87%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFDKV+RIEARS+ DM+M LDVN E+YP+ VG+KFT+AL+ TLNLDGTPDTGY+
Sbjct: 19 DGKKFDKVTRIEARSQNCDMFMHLDVNSEIYPMHVGDKFTMALAHTLNLDGTPDTGYYTP 78
Query: 183 GRKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQRL 362
GRK+LADKYEYVM+GK+YK+ + GSG K E+YVSYGGLLM+L+G+ ++S+FELDQRL
Sbjct: 79 GRKSLADKYEYVMHGKLYKVSDDGSGKGLKAEIYVSYGGLLMMLRGEASHVSQFELDQRL 138
Query: 363 FLLMRKV 383
FLLMRK+
Sbjct: 139 FLLMRKL 145
>ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like isoform X1 [Oryza brachyantha]
gi|573948243|ref|XP_006656428.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like isoform X2
[Oryza brachyantha] gi|573948245|ref|XP_006656429.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 8B-like isoform X3 [Oryza brachyantha]
gi|573948247|ref|XP_006656430.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like isoform X4
[Oryza brachyantha] gi|573948249|ref|XP_006656431.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 8B-like isoform X5 [Oryza brachyantha]
Length = 146
Score = 185 bits (470), Expect = 5e-45
Identities = 93/129 (72%), Positives = 109/129 (84%), Gaps = 2/129 (1%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFD+VSRIEARSEQFDMYM LDV EVYP+ G+KFT+ L+ TLNLDGTPD G++ Q
Sbjct: 18 DGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRPGDKFTMVLAPTLNLDGTPDIGFYTQ 77
Query: 183 -GRKTLADKYEYVMNGKVYKIDESGSGVSA-KVELYVSYGGLLMLLKGDPGNLSKFELDQ 356
GRKTLADKY+YVM+GK+YKI E GSG A KVE+Y S+GGLLM+LKGDP + FELDQ
Sbjct: 78 AGRKTLADKYDYVMHGKLYKISEDGSGGQATKVEIYASFGGLLMMLKGDPSTAANFELDQ 137
Query: 357 RLFLLMRKV 383
RLFLL+RKV
Sbjct: 138 RLFLLIRKV 146
>ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like isoform 1 [Solanum lycopersicum]
gi|460377396|ref|XP_004234479.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit rpabc3-like
isoform 2 [Solanum lycopersicum]
Length = 145
Score = 184 bits (468), Expect = 8e-45
Identities = 87/128 (67%), Positives = 112/128 (87%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFD+V+RIEARSEQFDM+MLLDVN E+YP+ V +KF + L++TLNLDGTPDTGYFIQ
Sbjct: 18 DGKKFDRVNRIEARSEQFDMFMLLDVNTEIYPMRVKDKFMMVLASTLNLDGTPDTGYFIQ 77
Query: 183 G-RKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQR 359
G +K+LADK+EYVM+GK+Y+I E GSG K +++VS+GGLLM L+GDP +KFELDQ+
Sbjct: 78 GNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLMQLRGDPSIAAKFELDQK 137
Query: 360 LFLLMRKV 383
+FLL+RKV
Sbjct: 138 IFLLIRKV 145
>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
sativa Japonica Group]
Length = 396
Score = 184 bits (468), Expect = 8e-45
Identities = 91/129 (70%), Positives = 111/129 (86%), Gaps = 2/129 (1%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFD+VSRIEARSEQFDMYM LDV EVYP+ G++FT+ L+ TLNLDGTPDTG++ Q
Sbjct: 268 DGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTLNLDGTPDTGFYTQ 327
Query: 183 -GRKTLADKYEYVMNGKVYKIDE-SGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQ 356
GRKTLADK++YVM+GK+YKI E S SG + KVE+Y S+GGLLM+LKGDP + + FELDQ
Sbjct: 328 AGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLKGDPSSAASFELDQ 387
Query: 357 RLFLLMRKV 383
RLFLL+RKV
Sbjct: 388 RLFLLIRKV 396
>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
gi|125598367|gb|EAZ38147.1| hypothetical protein
OsJ_22498 [Oryza sativa Japonica Group]
Length = 191
Score = 184 bits (468), Expect = 8e-45
Identities = 91/129 (70%), Positives = 111/129 (86%), Gaps = 2/129 (1%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFD+VSRIEARSEQFDMYM LDV EVYP+ G++FT+ L+ TLNLDGTPDTG++ Q
Sbjct: 63 DGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTLNLDGTPDTGFYTQ 122
Query: 183 -GRKTLADKYEYVMNGKVYKIDE-SGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQ 356
GRKTLADK++YVM+GK+YKI E S SG + KVE+Y S+GGLLM+LKGDP + + FELDQ
Sbjct: 123 AGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLKGDPSSAASFELDQ 182
Query: 357 RLFLLMRKV 383
RLFLL+RKV
Sbjct: 183 RLFLLIRKV 191
>ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like [Solanum tuberosum]
Length = 145
Score = 184 bits (467), Expect = 1e-44
Identities = 86/128 (67%), Positives = 112/128 (87%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFD+V+RIEARSEQFDM+MLLD+N E+YP+ V +KF + L++TLNLDGTPDTGYFIQ
Sbjct: 18 DGKKFDRVNRIEARSEQFDMFMLLDINTEIYPMRVKDKFMMVLASTLNLDGTPDTGYFIQ 77
Query: 183 G-RKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQR 359
G +K+LADK+EYVM+GK+Y+I E GSG K +++VS+GGLLM L+GDP +KFELDQ+
Sbjct: 78 GNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLMQLRGDPSIAAKFELDQK 137
Query: 360 LFLLMRKV 383
+FLL+RKV
Sbjct: 138 IFLLIRKV 145
>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3 isoform 1 [Vitis vinifera]
gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit rpabc3 isoform 2
[Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
protein product [Vitis vinifera]
Length = 145
Score = 184 bits (467), Expect = 1e-44
Identities = 88/128 (68%), Positives = 110/128 (85%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFDKVSRIEA+SEQ DMYM LDVN E+YP+ GEKF ++L++TL+LDGTPDTGY+ Q
Sbjct: 18 DGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSLASTLDLDGTPDTGYYTQ 77
Query: 183 -GRKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQR 359
GRK+LADK+EYVM+GK+YKI E GSG + K +YVS+GGLLM+L GDP N +K +LDQR
Sbjct: 78 AGRKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLMMLSGDPANTAKLDLDQR 137
Query: 360 LFLLMRKV 383
+FLL+RKV
Sbjct: 138 VFLLIRKV 145
>ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor]
gi|241919960|gb|EER93104.1| hypothetical protein
SORBIDRAFT_01g001330 [Sorghum bicolor]
Length = 145
Score = 184 bits (466), Expect = 1e-44
Identities = 91/128 (71%), Positives = 104/128 (81%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFDKVSR+EARSEQ MYM LDV +VYP+ GEKF + L+ TLNLDGTPDTGY+ Q
Sbjct: 18 DGKKFDKVSRVEARSEQLGMYMQLDVATDVYPLRAGEKFNMVLAPTLNLDGTPDTGYYTQ 77
Query: 183 -GRKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQR 359
GRKTLAD YEYVM GK+YKI E S +AKVE+Y S+GGLLMLL+GDP + FELDQR
Sbjct: 78 AGRKTLADNYEYVMQGKLYKISEDTSSQNAKVEIYASFGGLLMLLRGDPSTAASFELDQR 137
Query: 360 LFLLMRKV 383
LFLLMRKV
Sbjct: 138 LFLLMRKV 145
>ref|XP_006402674.1| hypothetical protein EUTSA_v10006298mg [Eutrema salsugineum]
gi|567183404|ref|XP_006402675.1| hypothetical protein
EUTSA_v10006298mg [Eutrema salsugineum]
gi|557103773|gb|ESQ44127.1| hypothetical protein
EUTSA_v10006298mg [Eutrema salsugineum]
gi|557103774|gb|ESQ44128.1| hypothetical protein
EUTSA_v10006298mg [Eutrema salsugineum]
Length = 146
Score = 182 bits (461), Expect = 5e-44
Identities = 90/128 (70%), Positives = 110/128 (85%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFDKV+R+EARS +M+M LDVN EVYP++VG+KFT+A++ TLNLDGTPDTGYF
Sbjct: 20 DGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPMAVGDKFTLAMAPTLNLDGTPDTGYFTP 79
Query: 183 G-RKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQR 359
G +KTLADKYEYVM+GK+YKI E G + K ELYVS+GGLLMLL+GDP ++S FELDQR
Sbjct: 80 GAKKTLADKYEYVMHGKLYKITER-DGKTPKAELYVSFGGLLMLLQGDPAHISHFELDQR 138
Query: 360 LFLLMRKV 383
LFLLMRK+
Sbjct: 139 LFLLMRKL 146
>ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
gi|297817262|ref|XP_002876514.1| hypothetical protein
ARALYDRAFT_907465 [Arabidopsis lyrata subsp. lyrata]
gi|565468254|ref|XP_006292007.1| hypothetical protein
CARUB_v10018195mg [Capsella rubella]
gi|75335784|sp|Q9M1A8.1|RPB8B_ARATH RecName:
Full=DNA-directed RNA polymerases II, IV and V subunit
8B; AltName: Full=RNA polymerase Rpb8
gi|6996296|emb|CAB75457.1| putative protein [Arabidopsis
thaliana] gi|21554131|gb|AAM63211.1| RNA polymerase II
subunit, putative [Arabidopsis thaliana]
gi|26453032|dbj|BAC43592.1| unknown protein [Arabidopsis
thaliana] gi|30793811|gb|AAP40358.1| unknown protein
[Arabidopsis thaliana] gi|297322352|gb|EFH52773.1|
hypothetical protein ARALYDRAFT_907465 [Arabidopsis
lyrata subsp. lyrata] gi|332646423|gb|AEE79944.1| RNA
polymerase Rpb8 [Arabidopsis thaliana]
gi|482560714|gb|EOA24905.1| hypothetical protein
CARUB_v10018195mg [Capsella rubella]
Length = 146
Score = 182 bits (461), Expect = 5e-44
Identities = 89/128 (69%), Positives = 110/128 (85%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFDKV+R+EARS +M+M LDVN EVYP++VG+KFT+A++ TLNLDGTPDTGYF
Sbjct: 20 DGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAPTLNLDGTPDTGYFTP 79
Query: 183 G-RKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQR 359
G +KTLADKYEY+M+GK+YKI E G + K ELYVS+GGLLMLL+GDP ++S FELDQR
Sbjct: 80 GAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLQGDPAHISHFELDQR 138
Query: 360 LFLLMRKV 383
LFLLMRK+
Sbjct: 139 LFLLMRKL 146
>ref|XP_006397103.1| hypothetical protein EUTSA_v10029046mg [Eutrema salsugineum]
gi|557098120|gb|ESQ38556.1| hypothetical protein
EUTSA_v10029046mg [Eutrema salsugineum]
Length = 146
Score = 181 bits (460), Expect = 7e-44
Identities = 89/128 (69%), Positives = 110/128 (85%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFDKV+R+EARS +M+M LDVN EVYP++VG+KFT+A++ TLNLDGTPDTGYF
Sbjct: 20 DGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPMAVGDKFTMAMAPTLNLDGTPDTGYFTP 79
Query: 183 G-RKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQR 359
G +KTLADKYEY+M+GK+YKI E G + K ELYVS+GGLLMLL+GDP ++S FELDQR
Sbjct: 80 GAKKTLADKYEYIMHGKLYKITER-DGKTPKAELYVSFGGLLMLLQGDPAHISHFELDQR 138
Query: 360 LFLLMRKV 383
LFLLMRK+
Sbjct: 139 LFLLMRKL 146
>ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Cucumis sativus]
gi|449484745|ref|XP_004156968.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit rpabc3-like
[Cucumis sativus]
Length = 144
Score = 181 bits (460), Expect = 7e-44
Identities = 89/128 (69%), Positives = 111/128 (86%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFDKV+RIEA+SE+FDM+M LD+N E+YP+ GEKF++AL+ TLNLDGTPDTGYF+Q
Sbjct: 18 DGKKFDKVTRIEAKSEKFDMFMHLDINSEIYPLKEGEKFSMALAPTLNLDGTPDTGYFLQ 77
Query: 183 G-RKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQR 359
G RK+LAD+YEYVM GK+++I ES SG K E+ S+GGLLM+LKGDP + SKFELDQR
Sbjct: 78 GNRKSLADRYEYVMQGKLFRISES-SGHGGKAEIDASFGGLLMMLKGDPSHCSKFELDQR 136
Query: 360 LFLLMRKV 383
LFLL+RKV
Sbjct: 137 LFLLIRKV 144
>ref|XP_006305757.1| hypothetical protein CARUB_v10010575mg [Capsella rubella]
gi|482574468|gb|EOA38655.1| hypothetical protein
CARUB_v10010575mg [Capsella rubella]
Length = 146
Score = 181 bits (459), Expect = 9e-44
Identities = 89/128 (69%), Positives = 109/128 (85%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFDKV+R+EA S +M+M LDVN EVYP++VG+KFT+A++ TLNLDGTPDTGYF
Sbjct: 20 DGKKFDKVTRVEATSHNLEMFMHLDVNTEVYPMAVGDKFTLAMAPTLNLDGTPDTGYFTP 79
Query: 183 G-RKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQR 359
G +KTLADKYEY+M+GK+YKI E G + K ELYVS+GGLLMLLKGDP ++S FELDQR
Sbjct: 80 GAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLKGDPAHISHFELDQR 138
Query: 360 LFLLMRKV 383
LFLLMRK+
Sbjct: 139 LFLLMRKL 146
>ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Brachypodium distachyon]
Length = 146
Score = 181 bits (459), Expect = 9e-44
Identities = 92/129 (71%), Positives = 107/129 (82%), Gaps = 2/129 (1%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFD+V+RIEARSEQF MYM LDV VYP+ G+KFT+ L+ TLNLDGTPDTGY+ Q
Sbjct: 18 DGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVLAPTLNLDGTPDTGYYTQ 77
Query: 183 -GRKTLADKYEYVMNGKVYKIDE-SGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQ 356
GRKTLADKY+YVM+GK+YKI E S G +AKVE Y S+GGLLMLLKGDP + + ELDQ
Sbjct: 78 AGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVETYASFGGLLMLLKGDPSSAANLELDQ 137
Query: 357 RLFLLMRKV 383
RLFLLMRKV
Sbjct: 138 RLFLLMRKV 146
>ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like [Oryza brachyantha]
Length = 147
Score = 181 bits (458), Expect = 1e-43
Identities = 91/130 (70%), Positives = 110/130 (84%), Gaps = 3/130 (2%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFD+VSRIEAR+EQ ++YM LDV +VYP+ G+KFT+ L TLNLDGTPDTG+F Q
Sbjct: 18 DGKKFDRVSRIEARNEQLNVYMQLDVATDVYPMHPGDKFTMVLVPTLNLDGTPDTGFFTQ 77
Query: 183 -GRKTLADKYEYVMNGKVYKI--DESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELD 353
GRKTLADKYEYVM+GK+YKI D+ SG +AKVE+Y S+GGLLM+LKGDP + + FELD
Sbjct: 78 AGRKTLADKYEYVMHGKLYKISEDKETSGQNAKVEMYASFGGLLMMLKGDPSSAANFELD 137
Query: 354 QRLFLLMRKV 383
QRLFLLMRKV
Sbjct: 138 QRLFLLMRKV 147
>ref|NP_175827.1| DNA-directed RNA polymerases II and V subunit 8A [Arabidopsis
thaliana] gi|75100070|sp|O81097.1|RPB8A_ARATH RecName:
Full=DNA-directed RNA polymerases II and V subunit 8A;
AltName: Full=RNA polymerase I, II and III 16.5 kDa
subunit; Short=AtRPABC16.5
gi|4585968|gb|AAD25604.1|AC005287_6 RNA polymerase I, II
and III 16.5 kDa subunit [Arabidopsis thaliana]
gi|3372230|gb|AAC28252.1| RNA polymerase I, II and III
16.5 kDa subunit [Arabidopsis thaliana]
gi|21555812|gb|AAM63939.1| RNA polymerase II subunit,
putative [Arabidopsis thaliana]
gi|28466897|gb|AAO44057.1| At1g54250 [Arabidopsis
thaliana] gi|110735704|dbj|BAE99832.1| RNA polymerase I,
II and III 16.5 kDa subunit [Arabidopsis thaliana]
gi|332194950|gb|AEE33071.1| RNA polymerase Rpb8
[Arabidopsis thaliana]
Length = 146
Score = 181 bits (458), Expect = 1e-43
Identities = 89/128 (69%), Positives = 109/128 (85%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFDKV+R++A S +M+M LDVN EVYP++VG+KFT+AL+ TLNLDGTPDTGYF
Sbjct: 20 DGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPTLNLDGTPDTGYFTP 79
Query: 183 G-RKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQR 359
G +KTLADKYEY+M+GK+YKI E G + K ELYVS+GGLLMLLKGDP ++S FELDQR
Sbjct: 80 GAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLKGDPAHISHFELDQR 138
Query: 360 LFLLMRKV 383
LFLLMRK+
Sbjct: 139 LFLLMRKL 146
>ref|XP_002891800.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrata]
gi|297337642|gb|EFH68059.1| ATRPABC16.5 [Arabidopsis
lyrata subsp. lyrata]
Length = 146
Score = 181 bits (458), Expect = 1e-43
Identities = 89/128 (69%), Positives = 109/128 (85%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 EGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTVALSATLNLDGTPDTGYFIQ 182
+GKKFDKV+R++A S +M+M LDVN EVYP++VG+KFT+AL+ TLNLDGTPDTGYF
Sbjct: 20 DGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPTLNLDGTPDTGYFTP 79
Query: 183 G-RKTLADKYEYVMNGKVYKIDESGSGVSAKVELYVSYGGLLMLLKGDPGNLSKFELDQR 359
G +KTLADKYEY+M+GK+YKI E G + K ELYVS+GGLLMLLKGDP ++S FELDQR
Sbjct: 80 GAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLKGDPAHISHFELDQR 138
Query: 360 LFLLMRKV 383
LFLLMRK+
Sbjct: 139 LFLLMRKL 146