BLASTX nr result
ID: Ephedra27_contig00015071
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00015071
(632 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlise... 234 1e-59
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 231 2e-58
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe... 229 4e-58
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 228 1e-57
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 228 1e-57
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 227 2e-57
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 227 2e-57
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 227 2e-57
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco... 226 4e-57
ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polyme... 226 4e-57
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 226 5e-57
ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polyme... 225 7e-57
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 225 7e-57
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao] 223 3e-56
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] 223 5e-56
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 223 5e-56
ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [S... 223 5e-56
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 222 8e-56
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis... 222 8e-56
gb|EMS46141.1| putative RNA-dependent RNA polymerase SHL2 [Triti... 221 1e-55
>gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlisea aurea]
Length = 1195
Score = 234 bits (598), Expect = 1e-59
Identities = 121/209 (57%), Positives = 156/209 (74%), Gaps = 1/209 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F +RNVAK AARMGQCFSSTY+T+ RNGY+FSDGIG IS +LA EV
Sbjct: 537 FTDRNVAKCAARMGQCFSSTYATVEVPHGDVNFKLLEVKRNGYVFSDGIGTISPELASEV 596
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
+KKLQL+ +PPSA+QIR+GGYKGV+ W + G S +L+LR SMKKFES+H +LEI SW+
Sbjct: 597 AKKLQLSADPPSAYQIRYGGYKGVIACWPVKDGES-RLSLRRSMKKFESEHAVLEICSWT 655
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
+FLPG+LNRQIITLL++LGV DD+F +Q MI KL M+ ++AFDVLT+SC +
Sbjct: 656 KFLPGFLNRQIITLLTALGVPDDIFWNMQETMIQKLNRMIGDAKIAFDVLTNSC-AESGS 714
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQ 625
AA+ML+AGF P+ EP L+ ML+++RA Q
Sbjct: 715 TAAVMLSAGFRPQTEPHLRGMLSSIRAAQ 743
>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 231 bits (588), Expect = 2e-58
Identities = 123/210 (58%), Positives = 154/210 (73%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F NRNVAK AARMGQCFSSTY+T+ RNGY+FSDGIG IS+DLA EV
Sbjct: 542 FSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEV 601
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
++KL LN+NPPSA+QIR+ GYKGVV W ++ L+LRPSMKKF+S+H +LEI SW+
Sbjct: 602 AEKLHLNVNPPSAYQIRYAGYKGVVACWPTKND-GILLSLRPSMKKFDSNHTILEICSWT 660
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
RF PG+LNRQI+TLLSSL V D +F +Q EMI L +ML +VAFDV+T+SC N
Sbjct: 661 RFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEA-GN 719
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AA+ML+AGF P+ EP L+ ML+++RA QL
Sbjct: 720 TAALMLSAGFKPQSEPHLRGMLSSIRASQL 749
>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
Length = 1196
Score = 229 bits (585), Expect = 4e-58
Identities = 119/209 (56%), Positives = 151/209 (72%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXXRNGYMFSDGIGKISSDLAKEVS 181
F N+NVAK AARMGQCFSSTY+T+ RNGY+FSDGIG I+ DLA EV+
Sbjct: 541 FNNKNVAKCAARMGQCFSSTYATVEVTSSEVNDIPDIKRNGYVFSDGIGMITPDLALEVA 600
Query: 182 KKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWSR 361
+KL+L+ NPP A+QIRF G KGVV W ++ G ++L+LR SM KFES H LEI SW+R
Sbjct: 601 EKLKLDRNPPCAYQIRFAGCKGVVACWPSK-GDGFRLSLRTSMNKFESKHTTLEICSWTR 659
Query: 362 FLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPNM 541
+ PG+LNRQIITLLS+L V D++F R+Q +M+ KL +ML +VAFDVLT+SC N
Sbjct: 660 YQPGFLNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASC-AEQGNA 718
Query: 542 AAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AAIML+AGF P+ EP L+ ML ++A QL
Sbjct: 719 AAIMLSAGFKPQTEPHLRGMLTCIQAAQL 747
>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 228 bits (581), Expect = 1e-57
Identities = 122/210 (58%), Positives = 154/210 (73%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F NRNVAK AARMGQCFSSTY+T+ RNGY+FSDGIG IS+DLA EV
Sbjct: 542 FSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAVEV 601
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
++KL L++NPPSA+QIR+ G KGVV W ++ +L+LRPSMKKF+S+H +LEI SW+
Sbjct: 602 AEKLHLSVNPPSAYQIRYAGCKGVVACWPTKND-GIRLSLRPSMKKFDSNHTILEICSWT 660
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
RF PG+LNRQI+TLLSSL V D +F +Q EMI L +ML +VAFDV+T+SC N
Sbjct: 661 RFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEA-GN 719
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AAIML+AGF P+ EP L+ ML+++RA QL
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLSSIRASQL 749
>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 228 bits (580), Expect = 1e-57
Identities = 122/210 (58%), Positives = 154/210 (73%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F NRNVAK AARMGQCFSSTY+T+ RNGY+FSDGIG IS+DLA EV
Sbjct: 542 FSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAIEV 601
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
++KL L++NPPSA+QIR+ G KGVV W ++ +L+LRPSMKKF+S+H +LEI SW+
Sbjct: 602 AEKLHLSVNPPSAYQIRYAGCKGVVACWPTKND-GIRLSLRPSMKKFDSNHTILEICSWT 660
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
RF PG+LNRQI+TLLSSL V D +F +Q EMI L +ML +VAFDV+T+SC N
Sbjct: 661 RFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEA-GN 719
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AAIML+AGF P+ EP L+ ML+++RA QL
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLSSIRASQL 749
>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
tuberosum]
Length = 1198
Score = 227 bits (579), Expect = 2e-57
Identities = 122/210 (58%), Positives = 154/210 (73%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F NRNVAK AARMGQCFSSTY+T+ RNGY+FSDGIG +S+DL+ EV
Sbjct: 543 FGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMSADLSIEV 602
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
+ KLQL++NPP A+QIR+ G KGVV W AE +L+LRPSMKKF+S+H +LEI SW+
Sbjct: 603 AAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKD-GIRLSLRPSMKKFDSNHTILEICSWT 661
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
R PG+LNRQIITLLSSL V D++F +Q EM+ KL ++L +VAFDV+T+SC N
Sbjct: 662 RLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEA-GN 720
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AAIML+AGF P+ EP L+ MLA++RA QL
Sbjct: 721 TAAIMLSAGFKPQSEPHLRGMLASIRAAQL 750
>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 227 bits (578), Expect = 2e-57
Identities = 122/210 (58%), Positives = 153/210 (72%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F NRNVAK AARMGQCFSSTY+T+ RNGY+FSDGIG IS+DLA EV
Sbjct: 542 FSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLALEV 601
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
++KL L++NPPSA+QIR+ G KGVV W ++ L+LRPSMKKF+S+H +LEI SW+
Sbjct: 602 AEKLHLSVNPPSAYQIRYAGCKGVVACWPTKND-GILLSLRPSMKKFDSNHTILEICSWT 660
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
RF PG+LNRQI+TLLSSL V D +F +Q EMI L +ML +VAFDV+T+SC N
Sbjct: 661 RFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEA-GN 719
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AAIML+AGF P+ EP L+ ML+++RA QL
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLSSIRASQL 749
>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 227 bits (578), Expect = 2e-57
Identities = 121/210 (57%), Positives = 154/210 (73%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F NRNVAK AARMGQCFSSTY+T+ RNGY+FSDGIG IS+DLA EV
Sbjct: 542 FSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEV 601
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
++KL L++NPPSA+QIR+ G KGVV W ++ +L+LRPSMKKF+S+H +LEI SW+
Sbjct: 602 AEKLHLSVNPPSAYQIRYAGCKGVVACWPTKND-GIRLSLRPSMKKFDSNHTILEICSWT 660
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
RF PG+LNRQI+TLLSSL V D +F +Q EMI L +ML +VAFDV+T+SC N
Sbjct: 661 RFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEA-GN 719
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AA+ML+AGF P+ EP L+ ML+++RA QL
Sbjct: 720 TAALMLSAGFKPQSEPHLRGMLSSIRASQL 749
>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
6 [Solanum lycopersicum]
Length = 1197
Score = 226 bits (576), Expect = 4e-57
Identities = 121/210 (57%), Positives = 154/210 (73%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F NRNVAK AARMGQCFSSTY+T+ RNGY+FSDGIG +++DL+ EV
Sbjct: 542 FGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSIEV 601
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
+ KLQL++NPP A+QIR+ G KGVV W AE +L+LRPSMKKF+S+H +LEI SW+
Sbjct: 602 AAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKD-GIRLSLRPSMKKFDSNHTILEICSWT 660
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
R PG+LNRQIITLLSSL V D++F +Q EM+ KL ++L +VAFDV+T+SC N
Sbjct: 661 RLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEA-GN 719
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AAIML+AGF P+ EP L+ MLA++RA QL
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLASIRAAQL 749
>ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Brachypodium distachyon]
Length = 1208
Score = 226 bits (576), Expect = 4e-57
Identities = 117/210 (55%), Positives = 153/210 (72%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYST-MXXXXXXXXXXXXXXRNGYMFSDGIGKISSDLAKEV 178
F ++NVAKHAARMGQCFSSTY+T M RN Y FSDGIGKI+ DLA EV
Sbjct: 557 FTSKNVAKHAARMGQCFSSTYATVMVKPDEVNESLEDVERNNYTFSDGIGKITPDLAMEV 616
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
++KLQL +PPSA+QIR+ GYKGV+ W + + +L+LRPSMKKFES H +LE++SW+
Sbjct: 617 AEKLQLMDSPPSAYQIRYAGYKGVIAVWQGNN-NGIRLSLRPSMKKFESKHSVLEVVSWT 675
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
RF PG+LNRQII LLSSL V+DD+F ++Q M++ L ++L +VAF+V+T+SC N
Sbjct: 676 RFQPGFLNRQIILLLSSLNVSDDIFSQMQESMLFNLNKILLDSDVAFEVVTTSC-AEQGN 734
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AA+ML+AGF P EP L+ ML A+R+ QL
Sbjct: 735 TAALMLSAGFGPGTEPHLRGMLLAIRSAQL 764
>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 226 bits (575), Expect = 5e-57
Identities = 120/210 (57%), Positives = 154/210 (73%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F NRNVAK AARMGQCFSSTY+T+ RNGY+FSDGIG IS+DLA EV
Sbjct: 542 FSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEV 601
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
++KL L++NPP+A+QIR+ G KGVV W ++ +L+LRPSMKKF+S+H +LEI SW+
Sbjct: 602 AEKLHLSVNPPAAYQIRYAGCKGVVACWPTKND-GIRLSLRPSMKKFDSNHTILEICSWT 660
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
RF PG+LNRQI+TLLSSL V D +F +Q EMI L +ML +VAFDV+T+SC N
Sbjct: 661 RFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEA-GN 719
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AA+ML+AGF P+ EP L+ ML+++RA QL
Sbjct: 720 TAALMLSAGFKPQSEPHLRGMLSSIRASQL 749
>ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Setaria
italica]
Length = 1211
Score = 225 bits (574), Expect = 7e-57
Identities = 118/210 (56%), Positives = 151/210 (71%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F ++NVAKHAARMGQCFSSTY+T+ RNGY+FSDGIGKI+ DLA EV
Sbjct: 558 FTSKNVAKHAARMGQCFSSTYATVVMQPDEVNECLEDVERNGYVFSDGIGKITPDLAMEV 617
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
+K LQL NPPSA+QIR+ G+KGV+ W E+ +L+LRPSM KFES H +LE++SW+
Sbjct: 618 AKTLQLTDNPPSAYQIRYAGFKGVIAVWQGEND-GIRLSLRPSMHKFESTHTVLEVVSWT 676
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
+F PG+LNRQIITLLSSL V D +F ++Q M+ L +L +VAFDV+T+SC N
Sbjct: 677 KFQPGFLNRQIITLLSSLNVPDAIFSQMQEAMLSNLNNILSDTDVAFDVVTTSC-AEQGN 735
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AA+ML+AGF+P EP LK ML A+R+ QL
Sbjct: 736 TAALMLSAGFSPGTEPHLKAMLLAIRSSQL 765
>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1200
Score = 225 bits (574), Expect = 7e-57
Identities = 120/210 (57%), Positives = 152/210 (72%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F NRN+AK AARMGQCFSSTY+T+ RNGY+FSDGIG I+ DLA+EV
Sbjct: 545 FTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAREV 604
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
++KL+L+++PP A+QIR+ G KGVV W + G +L+LRPSM KF+S+H LEI SW+
Sbjct: 605 AEKLKLDIDPPCAYQIRYAGCKGVVACWPGK-GDGVRLSLRPSMNKFQSNHTTLEICSWT 663
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
RF PG+LNRQIITLLS+L V D VF ++Q M+ KL +M +VAFDVLT+SC N
Sbjct: 664 RFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCAD-QGN 722
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
+AAIML+AGF P+REP L+ ML VRA QL
Sbjct: 723 VAAIMLSAGFKPDREPHLRGMLTCVRAAQL 752
>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
Length = 1197
Score = 223 bits (569), Expect = 3e-56
Identities = 122/210 (58%), Positives = 151/210 (71%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F NRN+AK AARMGQCFSSTY+T+ RNGY+FSDGIGKI+ DLAKEV
Sbjct: 542 FTNRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEV 601
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
++KL+L++NPP A+QIR+ G KGVV W E G +L+LR SM KF SDH LEI SW+
Sbjct: 602 AQKLKLDLNPPCAYQIRYAGCKGVVACWP-EEGDGVRLSLRCSMNKFFSDHTTLEICSWT 660
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
RF PG+LNRQIITLLS+ V D+VF +QN M+ KL ++L +VAF+VLTSSC+ N
Sbjct: 661 RFQPGFLNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCS-EQGN 719
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AAIML+AGF P+ EP L+ +L VRA QL
Sbjct: 720 AAAIMLSAGFKPQTEPHLRGILTCVRASQL 749
>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
Length = 1194
Score = 223 bits (567), Expect = 5e-56
Identities = 116/210 (55%), Positives = 152/210 (72%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F NRN+AK AARMGQCFSSTY+T+ RN Y+FSDGIG I+ DLAKEV
Sbjct: 538 FNNRNIAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLAKEV 597
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
++KL+L++NPPSA+QIR+ G KGVV W + G +L+LR SM KF+S H +LEI SW+
Sbjct: 598 AEKLKLDINPPSAYQIRYAGCKGVVACWPPK-GDGIRLSLRRSMNKFDSKHTILEICSWT 656
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
RF PG+LNRQI+TLLS+L V D++F ++Q M++KL +ML +VAF+VLT+SC N
Sbjct: 657 RFQPGFLNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCP-EQGN 715
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
+ AIML+AGF P+ EP L+ ML +RA QL
Sbjct: 716 VGAIMLSAGFKPQSEPHLQGMLTCIRAAQL 745
>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
vesca]
Length = 1197
Score = 223 bits (567), Expect = 5e-56
Identities = 119/210 (56%), Positives = 151/210 (71%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F NRNVAK AARMGQCFSSTY+T+ RNGY+FSDGIG+I+ DLA EV
Sbjct: 542 FTNRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEV 601
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
++KL+L+ +PPSA+QIR+GG KGVV W + +G ++L+LR SM KF SDH LEI SW+
Sbjct: 602 AEKLKLDRDPPSAYQIRYGGCKGVVACWPS-TGDGFRLSLRRSMNKFASDHTTLEICSWT 660
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
R PG+LNRQIITLLS+L V D++F +Q M+ KL +ML +VAFDVLT+SC N
Sbjct: 661 RLQPGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASC-AEQGN 719
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AAIML+AGF P+ EP L+ ML ++A QL
Sbjct: 720 SAAIMLSAGFKPQTEPHLRGMLTCIQAAQL 749
>ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
gi|241929916|gb|EES03061.1| hypothetical protein
SORBIDRAFT_03g022880 [Sorghum bicolor]
Length = 1207
Score = 223 bits (567), Expect = 5e-56
Identities = 115/210 (54%), Positives = 152/210 (72%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F ++NVAKHAARMGQCFSSTY+T+ RNGY+FSDGIGKI+ DLA EV
Sbjct: 554 FTSKNVAKHAARMGQCFSSTYATVVMQPHEVNECLEEVERNGYIFSDGIGKITCDLALEV 613
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
++KL+L NPPSA+QIR+ G+KGV+ W E+ +L+LRPSM KFES+H +LE++SW+
Sbjct: 614 AQKLRLTDNPPSAYQIRYAGFKGVIAVWEGEND-GIRLSLRPSMHKFESNHNVLEVVSWT 672
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
+F PG+LNRQIITLLSSL V D +F ++Q M+ L +L +VAFD++T+SC N
Sbjct: 673 KFQPGFLNRQIITLLSSLNVPDAIFSQMQEAMLSNLNNILSDTDVAFDIVTTSC-AEQGN 731
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AA+ML+AG +P EP LK ML A+R+ QL
Sbjct: 732 TAALMLSAGISPGTEPHLKAMLLAIRSSQL 761
>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
Length = 1197
Score = 222 bits (565), Expect = 8e-56
Identities = 118/210 (56%), Positives = 150/210 (71%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F N+NVAK AAR+GQCFSSTY+T+ RNGY+FSDGIG I+ DLA+EV
Sbjct: 541 FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQEV 600
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
+ KL+++ +PP A+QIR+ GYKGVV W ++ +LALRPSM KFES+HR+LEI SW+
Sbjct: 601 ADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKD-GIRLALRPSMNKFESNHRILEICSWT 659
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
RF PG+LNRQIITLLS+L V D++F +Q MI KL M+ +VAF+VLT+SC N
Sbjct: 660 RFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASC-AEQGN 718
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AAIML+AGF P EP L+ ML +RA QL
Sbjct: 719 AAAIMLSAGFEPRTEPHLRGMLMCIRAAQL 748
>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
6 [Cucumis sativus]
Length = 1197
Score = 222 bits (565), Expect = 8e-56
Identities = 118/210 (56%), Positives = 150/210 (71%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F N+NVAK AAR+GQCFSSTY+T+ RNGY+FSDGIG I+ DLA+EV
Sbjct: 541 FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQEV 600
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
+ KL+++ +PP A+QIR+ GYKGVV W ++ +LALRPSM KFES+HR+LEI SW+
Sbjct: 601 ADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKD-GIRLALRPSMNKFESNHRILEICSWT 659
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
RF PG+LNRQIITLLS+L V D++F +Q MI KL M+ +VAF+VLT+SC N
Sbjct: 660 RFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASC-AEQGN 718
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AAIML+AGF P EP L+ ML +RA QL
Sbjct: 719 AAAIMLSAGFEPRTEPHLRGMLMCIRAAQL 748
>gb|EMS46141.1| putative RNA-dependent RNA polymerase SHL2 [Triticum urartu]
Length = 1029
Score = 221 bits (563), Expect = 1e-55
Identities = 115/210 (54%), Positives = 151/210 (71%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 FYNRNVAKHAARMGQCFSSTYSTMXXXXXXXXXXXXXX-RNGYMFSDGIGKISSDLAKEV 178
F ++NVAKH ARMGQCFSSTY+T+ RNGY+FSDGIGKI+ +LA EV
Sbjct: 371 FTSKNVAKHTARMGQCFSSTYATVVMQPHEVNECLEDVERNGYVFSDGIGKITRELALEV 430
Query: 179 SKKLQLNMNPPSAFQIRFGGYKGVVTAWAAESGHSYKLALRPSMKKFESDHRMLEIISWS 358
+KKLQL NPPSA+QIR+ G+KGV+ W E+ +L+LRPSM KF+S H +LE++SW+
Sbjct: 431 AKKLQLTDNPPSAYQIRYAGFKGVIAVWEGEND-GIQLSLRPSMHKFDSSHTVLEVVSWT 489
Query: 359 RFLPGYLNRQIITLLSSLGVNDDVFLRLQNEMIYKLGEMLDKVEVAFDVLTSSCTGVLPN 538
+F PG+LNRQIITLLSSL V D VF ++Q +M+ L +L +VAFDV+T+SC N
Sbjct: 490 KFQPGFLNRQIITLLSSLNVPDAVFSQMQKDMLSNLNNILTDTDVAFDVVTTSCADE-GN 548
Query: 539 MAAIMLNAGFNPEREPLLKDMLAAVRAVQL 628
AA+ML+AG +P EP LK +L A+R+ QL
Sbjct: 549 TAALMLSAGISPGTEPHLKALLLAIRSSQL 578