BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00014484
         (543 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein...    50   8e-07
emb|CAN67377.1| hypothetical protein VITISV_017914 [Vitis vinifera]    50   8e-07

>ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis
           vinifera] gi|297738576|emb|CBI27821.3| unnamed protein
           product [Vitis vinifera]
          Length = 1091

 Score = 50.4 bits (119), Expect(2) = 8e-07
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
 Frame = -1

Query: 519 HSCYNLARAYHSSGDMAKAREPYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 340
           HS YNLAR+YHS GD  KA   Y  ++K+S         + +G+   Q      R     
Sbjct: 306 HSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPY-YGLGQVQLKLGDFRSSLSN 364

Query: 339 FSKILEMEPNDVLAMERIGYAYTPKGILGK--QWFQRSAFYEHLSSDDYLHIRELRASLL 166
           F K+LE+ P +  A++ +G+ Y   G   K  ++ +++   +   +  +L + EL   + 
Sbjct: 365 FEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGEL--LIT 422

Query: 165 DQ*QEARDAYEKAR 124
                A DA++ AR
Sbjct: 423 SDTGAALDAFKTAR 436



 Score = 28.1 bits (61), Expect(2) = 8e-07
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
 Frame = -3

Query: 136 RESKGVLRKNNKEIPDPIGNNICA-------FQLAEESMKE 35
           + ++G+L+K  +E+P  + NNI         F+LAE++ KE
Sbjct: 433 KTARGLLKKGGEEVPIELLNNIGVLYFERGEFELAEQTFKE 473


>emb|CAN67377.1| hypothetical protein VITISV_017914 [Vitis vinifera]
          Length = 788

 Score = 50.4 bits (119), Expect(2) = 8e-07
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
 Frame = -1

Query: 519 HSCYNLARAYHSSGDMAKAREPYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 340
           HS YNLAR+YHS GD  KA   Y  ++K+S         + +G+   Q      R     
Sbjct: 306 HSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPY-YGLGQVQLKLGDFRSSLSN 364

Query: 339 FSKILEMEPNDVLAMERIGYAYTPKGILGK--QWFQRSAFYEHLSSDDYLHIRELRASLL 166
           F K+LE+ P +  A++ +G+ Y   G   K  ++ +++   +   +  +L + EL   + 
Sbjct: 365 FEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGEL--LIT 422

Query: 165 DQ*QEARDAYEKAR 124
                A DA++ AR
Sbjct: 423 SDTGAALDAFKTAR 436



 Score = 28.1 bits (61), Expect(2) = 8e-07
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
 Frame = -3

Query: 136 RESKGVLRKNNKEIPDPIGNNICA-------FQLAEESMKE 35
           + ++G+L+K  +E+P  + NNI         F+LAE++ KE
Sbjct: 433 KTARGLLKKGGEEVPIELLNNIGVLYFERGEFELAEQTFKE 473